Wall clock time and date at job start Sat Apr 11 2020 07:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.47092 * 2 1 4 4 C 1.38117 * 120.03577 * 265.25033 * 3 2 1 5 5 C 1.38276 * 120.06919 * 180.27934 * 4 3 2 6 6 C 1.38309 * 120.15668 * 359.76771 * 5 4 3 7 7 C 1.38079 * 120.07662 * 359.95675 * 6 5 4 8 8 C 1.50696 * 120.04298 * 180.02562 * 7 6 5 9 9 C 1.38906 * 120.03359 * 85.00118 * 3 2 1 10 10 N 1.39719 * 120.08195 * 359.97302 * 9 3 2 11 11 C 1.34777 * 120.00224 * 120.94132 * 10 9 3 12 12 O 1.21380 * 119.99712 * 4.27707 * 11 10 9 13 13 C 1.49355 * 120.00264 * 184.27918 * 11 10 9 14 14 O 1.21367 * 119.99744 * 359.97438 * 13 11 10 15 15 N 1.34770 * 119.99951 * 180.02562 * 13 11 10 16 16 C 1.47419 * 125.65165 * 359.95927 * 15 13 11 17 17 C 1.55125 * 104.94165 * 204.04060 * 16 15 13 18 18 C 1.55156 * 101.48707 * 323.21609 * 17 16 15 19 19 O 1.42900 * 110.72271 * 276.83829 * 18 17 16 20 20 C 1.50693 * 110.71995 * 153.73600 * 18 17 16 21 21 H 1.07999 * 120.00051 * 6.60219 * 20 18 17 22 22 C 1.37882 * 119.99951 * 186.33720 * 20 18 17 23 23 N 1.31514 * 119.99699 * 351.05928 * 22 20 18 24 24 Si 1.86800 * 119.99996 * 171.07138 * 22 20 18 25 25 H 1.48499 * 109.47478 * 94.69073 * 24 22 20 26 26 H 1.48499 * 109.46706 * 214.68866 * 24 22 20 27 27 H 1.48504 * 109.46957 * 334.68586 * 24 22 20 28 28 C 1.47022 * 125.64563 * 179.97438 * 15 13 11 29 29 H 1.09000 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47013 * 299.99773 * 1 2 3 31 31 H 1.09000 * 109.46937 * 60.00106 * 1 2 3 32 32 H 1.09000 * 109.47013 * 240.00227 * 2 1 3 33 33 H 1.08998 * 109.47075 * 120.00426 * 2 1 3 34 34 H 1.07996 * 119.96702 * 0.04698 * 4 3 2 35 35 H 1.08006 * 119.91763 * 179.74905 * 5 4 3 36 36 H 1.08005 * 119.96626 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.46754 * 277.75761 * 8 7 6 38 38 H 1.09006 * 109.47084 * 37.74657 * 8 7 6 39 39 H 1.08990 * 109.47703 * 157.75153 * 8 7 6 40 40 H 0.97000 * 119.99971 * 300.94486 * 10 9 3 41 41 H 1.09000 * 110.36438 * 323.00026 * 16 15 13 42 42 H 1.09004 * 110.37136 * 85.32308 * 16 15 13 43 43 H 1.09011 * 111.15658 * 205.12964 * 17 16 15 44 44 H 1.08994 * 110.93977 * 81.21187 * 17 16 15 45 45 H 0.96698 * 113.99727 * 171.85861 * 19 18 17 46 46 H 0.97001 * 119.99830 * 180.02562 * 23 22 20 47 47 H 1.09007 * 109.88323 * 59.48749 * 28 15 13 48 48 H 1.08999 * 109.88442 * 298.32510 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3562 2.0396 -1.1916 5 6 2.8226 3.3413 -1.1919 6 6 2.9621 4.0298 -0.0005 7 6 2.6348 3.4191 1.1940 8 6 2.7865 4.1701 2.4916 9 6 2.1653 2.1113 1.1980 10 7 1.8332 1.4903 2.4047 11 6 2.7621 1.3572 3.3722 12 8 3.8641 1.8448 3.2266 13 6 2.4356 0.6097 4.6233 14 8 1.3336 0.1225 4.7690 15 7 3.3644 0.4770 5.5908 16 6 4.7357 1.0160 5.5452 17 6 5.5502 0.1196 6.5145 18 6 4.5122 -0.1444 7.6370 19 8 4.4892 0.9384 8.5693 20 6 4.8062 -1.4446 8.3399 21 1 5.7072 -1.9925 8.1073 22 6 3.9274 -1.9318 9.2841 23 7 2.9280 -1.1848 9.6997 24 14 4.1567 -3.6529 9.9733 25 1 4.9315 -3.5806 11.2380 26 1 2.8280 -4.2599 10.2408 27 1 4.8925 -4.4863 8.9888 28 6 3.1777 -0.2294 6.8666 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.2485 1.5050 -2.1237 35 1 3.0789 3.8215 -2.1248 36 1 3.3271 5.0463 -0.0042 37 1 3.8242 4.1195 2.8215 38 1 2.5028 5.2121 2.3437 39 1 2.1425 3.7221 3.2482 40 1 0.9341 1.1549 2.5463 41 1 5.1374 0.9459 4.5343 42 1 4.7485 2.0505 5.8885 43 1 6.4200 0.6494 6.9033 44 1 5.8460 -0.8105 6.0292 45 1 3.7745 0.8834 9.2183 46 1 2.3100 -1.5274 10.3642 47 1 2.9239 -1.2728 6.6790 48 1 2.3857 0.2489 7.4428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592303103.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:50 Heat of formation + Delta-G solvation = -90.775272 kcal Electronic energy + Delta-G solvation = -31229.402198 eV Core-core repulsion = 27056.211924 eV Total energy + Delta-G solvation = -4173.190275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12365 -39.64529 -38.21833 -37.28403 -35.21287 -34.65210 -34.08208 -32.26365 -31.63986 -30.20330 -29.31867 -27.98650 -27.12286 -25.94907 -24.40887 -23.77652 -22.47397 -21.14523 -20.84110 -19.84609 -19.52061 -17.82638 -17.22074 -17.15082 -16.37936 -16.22824 -15.61615 -15.50206 -15.10706 -14.77800 -14.49177 -14.24034 -14.06561 -13.85625 -13.79328 -13.44577 -13.10236 -12.97568 -12.97474 -12.82934 -12.45701 -12.41725 -12.13290 -11.84798 -11.71486 -11.53669 -11.52489 -11.18889 -11.13794 -11.09888 -11.06479 -10.82135 -10.64828 -10.47389 -10.21751 -9.97832 -9.41855 -9.21808 -8.74721 -8.70757 -8.51095 -8.32990 -8.10434 -6.33924 -4.39781 1.02834 1.19026 1.69756 2.53846 3.18761 3.27073 3.30579 3.43339 3.56106 3.78681 4.24609 4.48070 4.55990 4.60863 4.77216 4.95012 4.95480 5.11161 5.13513 5.19819 5.29655 5.41379 5.44913 5.50358 5.66512 5.71913 5.73651 5.77359 5.79247 5.83389 5.98963 6.00528 6.11536 6.17467 6.25180 6.26270 6.38807 6.41674 6.45391 6.69038 6.72419 6.76633 6.84655 7.06834 7.12187 7.29329 7.68808 7.78961 7.93523 8.00679 8.32159 8.63243 9.25702 9.38875 10.74578 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018682 B = 0.002742 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.412336 B =10209.585067 C =10988.247121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.081 4.081 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.064 4.064 8 C -0.111 4.111 9 C 0.136 3.864 10 N -0.655 5.655 11 C 0.511 3.489 12 O -0.496 6.496 13 C 0.508 3.492 14 O -0.536 6.536 15 N -0.572 5.572 16 C 0.097 3.903 17 C -0.120 4.120 18 C 0.248 3.752 19 O -0.583 6.583 20 C -0.538 4.538 21 H 0.068 0.932 22 C 0.072 3.928 23 N -0.892 5.892 24 Si 0.902 3.098 25 H -0.279 1.279 26 H -0.283 1.283 27 H -0.271 1.271 28 C 0.098 3.902 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.418 0.582 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.383 0.617 46 H 0.270 0.730 47 H 0.073 0.927 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 7.538 -19.682 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 C -0.083 4.083 4 C -0.135 4.135 5 C -0.134 4.134 6 C -0.136 4.136 7 C -0.066 4.066 8 C -0.168 4.168 9 C 0.043 3.957 10 N -0.305 5.305 11 C 0.294 3.706 12 O -0.369 6.369 13 C 0.290 3.710 14 O -0.415 6.415 15 N -0.304 5.304 16 C -0.025 4.025 17 C -0.158 4.158 18 C 0.208 3.792 19 O -0.393 6.393 20 C -0.576 4.576 21 H 0.086 0.914 22 C -0.132 4.132 23 N -0.531 5.531 24 Si 0.729 3.271 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.196 1.196 28 C -0.023 4.023 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.257 0.743 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.234 0.766 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.539 7.792 -19.903 21.525 hybrid contribution -0.956 -1.254 0.799 1.768 sum -3.495 6.538 -19.105 20.493 Atomic orbital electron populations 1.21738 0.94434 1.02124 1.02020 1.20531 0.96340 0.92308 1.03339 1.19940 1.00165 0.96021 0.92172 1.20845 1.00557 0.95217 0.96891 1.21125 0.99524 0.94753 0.97984 1.20886 1.01000 1.00198 0.91474 1.19973 0.98039 0.92459 0.96141 1.20834 1.03487 0.98697 0.93779 1.17249 1.02627 0.91210 0.84579 1.43072 1.15054 1.58999 1.13416 1.20542 0.84715 0.80689 0.84638 1.90726 1.21577 1.45344 1.79203 1.19402 0.84967 0.82802 0.83876 1.90741 1.21668 1.49517 1.79597 1.48664 1.13143 1.51044 1.17555 1.22703 0.80749 0.97930 1.01089 1.22858 0.98325 0.99002 0.95644 1.19534 0.87663 0.86272 0.85766 1.86133 1.57445 1.48713 1.46969 1.21484 1.07826 1.05649 1.22601 0.91389 1.25068 0.94636 0.98121 0.95361 1.69646 1.16217 1.36717 1.30525 0.86415 0.77738 0.83697 0.79262 1.20448 1.20896 1.19582 1.23277 1.02138 0.96136 0.80754 0.91989 0.92717 0.92443 0.90686 0.90773 0.85770 0.85903 0.85722 0.89659 0.91794 0.92273 0.74289 0.89453 0.91272 0.90232 0.90453 0.76641 0.91959 0.90864 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.90 37.16 0.37 -0.85 16 2 C -0.09 -0.84 5.76 -27.88 -0.16 -1.00 16 3 C -0.08 -0.89 5.15 -104.42 -0.54 -1.42 16 4 C -0.12 -1.09 9.68 -39.61 -0.38 -1.47 16 5 C -0.12 -1.04 10.04 -39.54 -0.40 -1.44 16 6 C -0.12 -1.19 9.72 -39.61 -0.39 -1.57 16 7 C -0.06 -0.79 5.49 -104.42 -0.57 -1.36 16 8 C -0.11 -1.35 8.31 36.00 0.30 -1.05 16 9 C 0.14 1.72 5.74 -83.75 -0.48 1.23 16 10 N -0.65 -8.86 3.77 -10.29 -0.04 -8.90 16 11 C 0.51 8.35 6.38 -11.63 -0.07 8.28 16 12 O -0.50 -8.51 11.12 5.47 0.06 -8.45 16 13 C 0.51 9.80 7.91 -11.63 -0.09 9.71 16 14 O -0.54 -11.27 16.81 5.48 0.09 -11.18 16 15 N -0.57 -11.73 3.33 -170.92 -0.57 -12.30 16 16 C 0.10 1.83 6.06 -2.41 -0.01 1.82 16 17 C -0.12 -2.43 6.25 -24.47 -0.15 -2.58 16 18 C 0.25 5.91 0.84 -89.94 -0.08 5.83 16 19 O -0.58 -14.51 13.08 -35.23 -0.46 -14.97 16 20 C -0.54 -13.85 8.11 -34.44 -0.28 -14.13 16 21 H 0.07 1.73 7.80 -52.49 -0.41 1.32 16 22 C 0.07 1.84 5.22 -17.82 -0.09 1.75 16 23 N -0.89 -23.27 11.12 55.43 0.62 -22.65 16 24 Si 0.90 20.17 29.55 -169.99 -5.02 15.15 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 C 0.10 2.29 5.36 -3.06 -0.02 2.27 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.48 7.39 -51.93 -0.38 0.10 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.61 8.05 -51.93 -0.42 0.20 16 33 H 0.07 0.83 7.63 -51.93 -0.40 0.43 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.08 1.14 7.25 -51.93 -0.38 0.76 16 38 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 39 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 40 H 0.42 5.23 7.54 -40.82 -0.31 4.93 16 41 H 0.09 1.54 6.16 -51.93 -0.32 1.23 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.53 8.14 -51.92 -0.42 1.11 16 44 H 0.08 1.50 8.04 -51.93 -0.42 1.09 16 45 H 0.38 9.69 7.27 45.56 0.33 10.02 16 46 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 47 H 0.07 1.83 7.81 -51.93 -0.41 1.43 16 48 H 0.07 1.77 7.97 -51.93 -0.41 1.36 16 LS Contribution 388.56 15.07 5.86 5.86 Total: -1.00 -28.52 388.56 -8.88 -37.40 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -6.37 Total: 16.03 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -3.05 Total: 4.01 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.01 Total: -43.85 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.31 Total: -34.60 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.52 -8.88 -37.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592303103.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.371 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds