Wall clock time and date at job start Sat Apr 11 2020 07:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.47092 * 2 1 4 4 C 1.38117 * 120.03577 * 265.25033 * 3 2 1 5 5 C 1.38276 * 120.06919 * 180.27934 * 4 3 2 6 6 C 1.38309 * 120.15668 * 359.76771 * 5 4 3 7 7 C 1.38079 * 120.07662 * 359.95675 * 6 5 4 8 8 C 1.50696 * 120.04298 * 180.02562 * 7 6 5 9 9 C 1.38906 * 120.03359 * 85.00118 * 3 2 1 10 10 N 1.39719 * 120.08195 * 359.97302 * 9 3 2 11 11 C 1.34777 * 120.00224 * 120.94132 * 10 9 3 12 12 O 1.21380 * 119.99712 * 4.27707 * 11 10 9 13 13 C 1.49355 * 120.00264 * 184.27918 * 11 10 9 14 14 O 1.21367 * 119.99744 * 359.97438 * 13 11 10 15 15 N 1.34770 * 119.99951 * 180.02562 * 13 11 10 16 16 C 1.47419 * 125.65165 * 359.95927 * 15 13 11 17 17 C 1.55125 * 104.94165 * 204.04060 * 16 15 13 18 18 C 1.55156 * 101.48707 * 323.21609 * 17 16 15 19 19 O 1.42900 * 110.72271 * 276.83829 * 18 17 16 20 20 C 1.50693 * 110.71995 * 153.73600 * 18 17 16 21 21 H 1.07999 * 120.00051 * 6.60219 * 20 18 17 22 22 C 1.37882 * 119.99951 * 186.33720 * 20 18 17 23 23 N 1.31514 * 119.99699 * 351.05928 * 22 20 18 24 24 Si 1.86800 * 119.99996 * 171.07138 * 22 20 18 25 25 H 1.48499 * 109.47478 * 94.69073 * 24 22 20 26 26 H 1.48499 * 109.46706 * 214.68866 * 24 22 20 27 27 H 1.48504 * 109.46957 * 334.68586 * 24 22 20 28 28 C 1.47022 * 125.64563 * 179.97438 * 15 13 11 29 29 H 1.09000 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47013 * 299.99773 * 1 2 3 31 31 H 1.09000 * 109.46937 * 60.00106 * 1 2 3 32 32 H 1.09000 * 109.47013 * 240.00227 * 2 1 3 33 33 H 1.08998 * 109.47075 * 120.00426 * 2 1 3 34 34 H 1.07996 * 119.96702 * 0.04698 * 4 3 2 35 35 H 1.08006 * 119.91763 * 179.74905 * 5 4 3 36 36 H 1.08005 * 119.96626 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.46754 * 277.75761 * 8 7 6 38 38 H 1.09006 * 109.47084 * 37.74657 * 8 7 6 39 39 H 1.08990 * 109.47703 * 157.75153 * 8 7 6 40 40 H 0.97000 * 119.99971 * 300.94486 * 10 9 3 41 41 H 1.09000 * 110.36438 * 323.00026 * 16 15 13 42 42 H 1.09004 * 110.37136 * 85.32308 * 16 15 13 43 43 H 1.09011 * 111.15658 * 205.12964 * 17 16 15 44 44 H 1.08994 * 110.93977 * 81.21187 * 17 16 15 45 45 H 0.96698 * 113.99727 * 171.85861 * 19 18 17 46 46 H 0.97001 * 119.99830 * 180.02562 * 23 22 20 47 47 H 1.09007 * 109.88323 * 59.48749 * 28 15 13 48 48 H 1.08999 * 109.88442 * 298.32510 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3562 2.0396 -1.1916 5 6 2.8226 3.3413 -1.1919 6 6 2.9621 4.0298 -0.0005 7 6 2.6348 3.4191 1.1940 8 6 2.7865 4.1701 2.4916 9 6 2.1653 2.1113 1.1980 10 7 1.8332 1.4903 2.4047 11 6 2.7621 1.3572 3.3722 12 8 3.8641 1.8448 3.2266 13 6 2.4356 0.6097 4.6233 14 8 1.3336 0.1225 4.7690 15 7 3.3644 0.4770 5.5908 16 6 4.7357 1.0160 5.5452 17 6 5.5502 0.1196 6.5145 18 6 4.5122 -0.1444 7.6370 19 8 4.4892 0.9384 8.5693 20 6 4.8062 -1.4446 8.3399 21 1 5.7072 -1.9925 8.1073 22 6 3.9274 -1.9318 9.2841 23 7 2.9280 -1.1848 9.6997 24 14 4.1567 -3.6529 9.9733 25 1 4.9315 -3.5806 11.2380 26 1 2.8280 -4.2599 10.2408 27 1 4.8925 -4.4863 8.9888 28 6 3.1777 -0.2294 6.8666 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.2485 1.5050 -2.1237 35 1 3.0789 3.8215 -2.1248 36 1 3.3271 5.0463 -0.0042 37 1 3.8242 4.1195 2.8215 38 1 2.5028 5.2121 2.3437 39 1 2.1425 3.7221 3.2482 40 1 0.9341 1.1549 2.5463 41 1 5.1374 0.9459 4.5343 42 1 4.7485 2.0505 5.8885 43 1 6.4200 0.6494 6.9033 44 1 5.8460 -0.8105 6.0292 45 1 3.7745 0.8834 9.2183 46 1 2.3100 -1.5274 10.3642 47 1 2.9239 -1.2728 6.6790 48 1 2.3857 0.2489 7.4428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592303103.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:49 Heat of formation + Delta-G solvation = -108.287858 kcal Electronic energy + Delta-G solvation = -31230.161601 eV Core-core repulsion = 27056.211924 eV Total energy + Delta-G solvation = -4173.949677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.32978 -40.94997 -39.55463 -38.93355 -36.49544 -35.79833 -35.32376 -34.25068 -32.49028 -31.92307 -30.18812 -29.74712 -28.10802 -27.57057 -25.77360 -24.75669 -23.88398 -22.23274 -21.77370 -21.49319 -20.88386 -19.18186 -19.03707 -18.44174 -17.69731 -17.55615 -17.21633 -16.69845 -16.34635 -16.29179 -16.04085 -15.44812 -15.06218 -14.86329 -14.81749 -14.70449 -14.69174 -14.56518 -14.20022 -14.08918 -13.70788 -13.57115 -13.41815 -13.28121 -12.90614 -12.88372 -12.74926 -12.55223 -12.46940 -12.40078 -12.33063 -12.26213 -12.09423 -11.92964 -11.84282 -11.24815 -11.01346 -10.79474 -10.55906 -10.29789 -9.82417 -9.53001 -9.39996 -8.29754 -6.42615 0.03919 0.40495 0.41749 1.18420 1.40873 1.43801 1.53507 2.00393 2.34443 2.42807 2.74323 2.97257 3.17943 3.71096 3.75752 3.82812 4.00660 4.03890 4.11102 4.25291 4.30345 4.36484 4.39353 4.41539 4.53350 4.55854 4.61938 4.68586 4.72584 4.74845 4.89826 4.98190 5.03012 5.03716 5.05712 5.06625 5.21478 5.26177 5.29837 5.33626 5.42940 5.46697 5.57579 5.59463 5.71169 5.86808 6.04918 6.05501 6.27738 6.54543 6.64559 6.82356 7.25743 7.37470 8.77348 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018682 B = 0.002742 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.412336 B =10209.585067 C =10988.247121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.087 4.087 4 C -0.116 4.116 5 C -0.108 4.108 6 C -0.121 4.121 7 C -0.083 4.083 8 C -0.107 4.107 9 C 0.105 3.895 10 N -0.637 5.637 11 C 0.521 3.479 12 O -0.504 6.504 13 C 0.505 3.495 14 O -0.558 6.558 15 N -0.580 5.580 16 C 0.108 3.892 17 C -0.114 4.114 18 C 0.235 3.765 19 O -0.588 6.588 20 C -0.558 4.558 21 H 0.067 0.933 22 C 0.029 3.971 23 N -0.911 5.911 24 Si 0.960 3.040 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.267 1.267 28 C 0.115 3.885 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.145 0.855 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.421 0.579 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.377 0.623 46 H 0.271 0.729 47 H 0.049 0.951 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 7.893 -22.528 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.126 4.126 6 C -0.140 4.140 7 C -0.085 4.085 8 C -0.164 4.164 9 C 0.014 3.986 10 N -0.287 5.287 11 C 0.302 3.698 12 O -0.379 6.379 13 C 0.288 3.712 14 O -0.438 6.438 15 N -0.312 5.312 16 C -0.013 4.013 17 C -0.152 4.152 18 C 0.194 3.806 19 O -0.396 6.396 20 C -0.596 4.596 21 H 0.085 0.915 22 C -0.172 4.172 23 N -0.550 5.550 24 Si 0.786 3.214 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.191 1.191 28 C -0.007 4.007 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.163 0.837 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.260 0.740 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.227 0.773 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.006 8.164 -22.790 24.291 hybrid contribution -1.174 -1.315 1.580 2.367 sum -3.180 6.849 -21.210 22.514 Atomic orbital electron populations 1.21726 0.93603 1.02594 1.02149 1.20547 0.97051 0.91683 1.03141 1.20143 1.00073 0.96514 0.92137 1.21214 0.99427 0.95576 0.97217 1.21538 0.97731 0.94500 0.98808 1.21180 1.00505 1.01214 0.91084 1.20128 0.98955 0.92568 0.96863 1.20761 1.02088 0.99925 0.93584 1.17517 1.04901 0.91904 0.84315 1.42894 1.14462 1.58037 1.13299 1.19842 0.85132 0.80701 0.84088 1.90712 1.21954 1.45995 1.79212 1.20019 0.84304 0.82310 0.84544 1.90717 1.22539 1.50284 1.80236 1.48670 1.14199 1.51305 1.17008 1.22692 0.79545 0.97483 1.01583 1.22856 0.97940 0.99866 0.94544 1.19719 0.88909 0.85622 0.86310 1.86123 1.57201 1.49194 1.47108 1.21771 1.08025 1.06651 1.23171 0.91475 1.25778 0.94443 1.01259 0.95729 1.69734 1.16638 1.37890 1.30757 0.85501 0.77548 0.79747 0.78637 1.20022 1.20869 1.19132 1.22803 1.01258 0.94692 0.81969 0.91377 0.93717 0.91159 0.88903 0.92923 0.83053 0.82730 0.83740 0.91110 0.89732 0.94219 0.73971 0.87807 0.91113 0.89088 0.89673 0.77314 0.91924 0.93245 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.90 71.98 0.71 -1.48 16 2 C -0.09 -1.54 5.76 29.85 0.17 -1.37 16 3 C -0.09 -1.74 5.15 -19.73 -0.10 -1.84 16 4 C -0.12 -1.77 9.68 22.25 0.22 -1.56 16 5 C -0.11 -1.53 10.04 22.30 0.22 -1.31 16 6 C -0.12 -2.13 9.72 22.25 0.22 -1.92 16 7 C -0.08 -1.93 5.49 -19.73 -0.11 -2.04 16 8 C -0.11 -2.55 8.31 71.23 0.59 -1.96 16 9 C 0.11 2.57 5.74 38.22 0.22 2.79 16 10 N -0.64 -17.36 3.77 -304.83 -1.15 -18.50 16 11 C 0.52 17.18 6.38 87.24 0.56 17.74 16 12 O -0.50 -17.23 11.12 -3.34 -0.04 -17.27 16 13 C 0.51 20.00 7.91 87.24 0.69 20.69 16 14 O -0.56 -24.25 16.81 -3.30 -0.06 -24.30 16 15 N -0.58 -24.32 3.33 -813.03 -2.71 -27.03 16 16 C 0.11 4.05 6.06 86.93 0.53 4.58 16 17 C -0.11 -4.58 6.25 32.06 0.20 -4.38 16 18 C 0.23 11.39 0.84 -10.35 -0.01 11.38 16 19 O -0.59 -29.87 13.08 -148.98 -1.95 -31.82 16 20 C -0.56 -29.13 8.11 25.60 0.21 -28.92 16 21 H 0.07 3.43 7.80 -2.91 -0.02 3.41 16 22 C 0.03 1.53 5.22 84.66 0.44 1.97 16 23 N -0.91 -48.61 11.12 21.45 0.24 -48.37 16 24 Si 0.96 41.60 29.55 68.60 2.03 43.63 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 C 0.12 5.59 5.36 86.73 0.46 6.06 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 0.76 7.39 -2.39 -0.02 0.74 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 1.29 8.05 -2.39 -0.02 1.27 16 33 H 0.05 1.15 7.63 -2.39 -0.02 1.14 16 34 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.07 1.87 7.25 -2.39 -0.02 1.86 16 38 H 0.08 1.58 8.13 -2.38 -0.02 1.56 16 39 H 0.04 1.07 6.43 -2.39 -0.02 1.05 16 40 H 0.42 10.79 7.54 -92.71 -0.70 10.09 16 41 H 0.10 3.58 6.16 -2.39 -0.01 3.56 16 42 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.09 3.42 8.14 -2.38 -0.02 3.40 16 44 H 0.08 3.26 8.04 -2.39 -0.02 3.24 16 45 H 0.38 19.78 7.27 -74.06 -0.54 19.24 16 46 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 47 H 0.05 2.59 7.81 -2.38 -0.02 2.57 16 48 H 0.04 2.38 7.97 -2.39 -0.02 2.36 16 Total: -1.00 -62.13 388.56 1.35 -60.78 By element: Atomic # 1 Polarization: 44.70 SS G_CDS: -0.24 Total: 44.46 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 5.22 Total: 18.44 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -3.61 Total: -93.91 kcal Atomic # 8 Polarization: -71.36 SS G_CDS: -2.04 Total: -73.40 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -62.13 1.35 -60.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592303103.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.512 kcal (2) G-P(sol) polarization free energy of solvation -62.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds