Wall clock time and date at job start Sat Apr 11 2020 07:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39715 * 125.77693 * 2 1 4 4 C 1.36172 * 107.85536 * 180.16637 * 3 2 1 5 5 N 1.39314 * 126.26517 * 179.84628 * 4 3 2 6 6 C 1.34774 * 119.99714 * 359.68646 * 5 4 3 7 7 O 1.21458 * 119.99993 * 359.97438 * 6 5 4 8 8 C 1.48755 * 119.99918 * 179.97438 * 6 5 4 9 9 N 1.32760 * 119.98562 * 0.02562 * 8 6 5 10 10 C 1.33013 * 120.01211 * 179.97438 * 9 8 6 11 11 N 1.38027 * 120.00106 * 179.97438 * 10 9 8 12 12 N 1.32855 * 119.98624 * 0.02562 * 10 9 8 13 13 C 1.32832 * 119.97493 * 359.97438 * 12 10 9 14 14 N 1.38027 * 120.00694 * 180.02562 * 13 12 10 15 15 C 1.46506 * 120.00022 * 0.02562 * 14 13 12 16 16 C 1.46499 * 119.99983 * 179.72831 * 14 13 12 17 17 N 1.32729 * 119.98732 * 180.27717 * 8 6 5 18 18 N 1.35832 * 107.46914 * 359.58005 * 4 3 2 19 19 C 1.46499 * 126.09384 * 180.26620 * 18 4 3 20 20 C 1.50701 * 109.47037 * 90.00045 * 19 18 4 21 21 H 1.07998 * 120.00187 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99793 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00145 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00243 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47289 * 59.99978 * 24 22 20 26 26 H 1.48501 * 109.47656 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.46993 * 300.00477 * 24 22 20 28 28 N 1.30842 * 125.76953 * 179.69514 * 2 1 3 29 29 H 1.08994 * 109.47274 * 270.28040 * 1 2 3 30 30 H 1.09004 * 109.46704 * 30.27615 * 1 2 3 31 31 H 1.09002 * 109.47508 * 150.27719 * 1 2 3 32 32 H 1.07996 * 126.06935 * 0.04143 * 3 2 1 33 33 H 0.97000 * 119.99528 * 179.68363 * 5 4 3 34 34 H 0.97009 * 119.99516 * 180.02562 * 11 10 9 35 35 H 0.96998 * 120.00484 * 0.02562 * 11 10 9 36 36 H 1.08999 * 109.46892 * 269.72268 * 15 14 13 37 37 H 1.09000 * 109.46803 * 29.71441 * 15 14 13 38 38 H 1.09000 * 109.47214 * 149.72234 * 15 14 13 39 39 H 1.09004 * 109.46973 * 180.28213 * 16 14 13 40 40 H 1.08995 * 109.47424 * 300.27601 * 16 14 13 41 41 H 1.08998 * 109.47492 * 60.28026 * 16 14 13 42 42 H 1.08997 * 109.46679 * 209.99912 * 19 18 4 43 43 H 1.09003 * 109.47581 * 329.99910 * 19 18 4 44 44 H 0.97003 * 120.00131 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.1335 0.0000 4 6 3.6195 0.7145 -0.0038 5 7 4.7492 1.5297 -0.0081 6 6 4.6126 2.8705 -0.0152 7 8 3.5046 3.3680 -0.0183 8 6 5.8188 3.7410 -0.0192 9 7 7.0298 3.1968 -0.0163 10 6 8.1088 3.9746 -0.0203 11 7 9.3676 3.4086 -0.0168 12 7 7.9744 5.2964 -0.0268 13 6 6.7626 5.8403 -0.0297 14 7 6.6222 7.2134 -0.0370 15 6 7.8100 8.0711 -0.0421 16 6 5.2856 7.8130 -0.0462 17 7 5.6841 5.0614 -0.0206 18 7 3.6088 -0.6438 0.0035 19 6 4.7857 -1.5161 0.0081 20 6 5.1892 -1.8077 1.4305 21 1 4.6251 -1.3858 2.2492 22 6 6.2779 -2.6139 1.6868 23 7 6.9646 -3.1281 0.6899 24 14 6.7778 -2.9760 3.4498 25 1 5.6578 -3.6514 4.1531 26 1 7.9709 -3.8601 3.4546 27 1 7.1023 -1.7036 4.1436 28 7 2.2718 -1.0616 0.0056 29 1 -0.3633 0.0050 1.0276 30 1 -0.3633 0.8876 -0.5181 31 1 -0.3634 -0.8925 -0.5095 32 1 1.9873 2.1597 0.0006 33 1 5.6340 1.1322 -0.0059 34 1 10.1545 3.9760 -0.0194 35 1 9.4656 2.4436 -0.0117 36 1 8.1020 8.2933 0.9843 37 1 8.6268 7.5575 -0.5491 38 1 7.5847 9.0005 -0.5651 39 1 5.3749 8.8994 -0.0561 40 1 4.7462 7.4848 -0.9347 41 1 4.7413 7.5013 0.8452 42 1 4.5476 -2.4501 -0.5007 43 1 5.6076 -1.0202 -0.5083 44 1 7.7308 -3.6950 0.8702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593893059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:52 Heat of formation + Delta-G solvation = 139.378177 kcal Electronic energy + Delta-G solvation = -29927.278750 eV Core-core repulsion = 25725.113836 eV Total energy + Delta-G solvation = -4202.164913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.76394 -40.73976 -39.04294 -37.59424 -35.54285 -34.81184 -33.77012 -33.19452 -32.04191 -31.73747 -29.21614 -28.62887 -28.27172 -26.67548 -26.01644 -25.45557 -22.87299 -22.64417 -21.61961 -19.80345 -19.77641 -19.06413 -18.15597 -16.97978 -16.67354 -16.45522 -16.40067 -16.13436 -15.88188 -15.25097 -15.01911 -14.71121 -14.60779 -14.42417 -14.20733 -13.97406 -13.90437 -12.90652 -12.86670 -12.74326 -12.73431 -12.47886 -12.26985 -12.18822 -12.01415 -11.77305 -11.53342 -11.29097 -11.06156 -10.84717 -10.40428 -10.36465 -10.25753 -9.79418 -9.76455 -9.68719 -9.48248 -9.17802 -8.67297 -8.54948 -7.88818 -7.45085 -6.28955 -4.36849 0.47306 1.21871 2.07977 2.36193 2.58714 2.85822 3.10979 3.21481 3.25056 3.30174 3.55867 3.59853 3.91568 3.96253 4.25607 4.30512 4.52838 4.80538 4.97439 5.04459 5.08668 5.37694 5.37931 5.38937 5.52611 5.63099 5.69030 6.05455 6.07147 6.15654 6.17907 6.21000 6.29973 6.39746 6.57581 6.66665 6.88470 6.90440 6.98545 7.07527 7.37281 7.51394 7.58756 7.64735 7.83173 7.86408 8.21436 8.34532 8.63767 8.73459 9.30138 10.78213 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.009239 B = 0.003532 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.854752 B = 7925.716538 C =10371.914559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.290 4.290 4 C 0.299 3.701 5 N -0.612 5.612 6 C 0.592 3.408 7 O -0.473 6.473 8 C 0.415 3.585 9 N -0.612 5.612 10 C 0.634 3.366 11 N -0.801 5.801 12 N -0.643 5.643 13 C 0.625 3.375 14 N -0.579 5.579 15 C 0.101 3.899 16 C 0.104 3.896 17 N -0.584 5.584 18 N -0.343 5.343 19 C 0.257 3.743 20 C -0.539 4.539 21 H 0.064 0.936 22 C 0.068 3.932 23 N -0.890 5.890 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.275 1.275 28 N -0.280 5.280 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.163 0.837 33 H 0.428 0.572 34 H 0.417 0.583 35 H 0.423 0.577 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.586 20.547 -3.179 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.322 4.322 4 C 0.077 3.923 5 N -0.261 5.261 6 C 0.372 3.628 7 O -0.341 6.341 8 C 0.131 3.869 9 N -0.350 5.350 10 C 0.267 3.733 11 N -0.351 5.351 12 N -0.384 5.384 13 C 0.261 3.739 14 N -0.296 5.296 15 C -0.042 4.042 16 C -0.039 4.039 17 N -0.318 5.318 18 N -0.129 5.129 19 C 0.139 3.861 20 C -0.578 4.578 21 H 0.083 0.917 22 C -0.135 4.135 23 N -0.527 5.527 24 Si 0.732 3.268 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.200 1.200 28 N -0.105 5.105 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.267 0.733 34 H 0.248 0.752 35 H 0.256 0.744 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.109 19.694 -3.224 20.197 hybrid contribution 1.631 0.193 1.023 1.935 sum 4.740 19.886 -2.202 20.562 Atomic orbital electron populations 1.20026 0.87508 1.02372 1.02192 1.22003 0.96553 0.90913 1.01964 1.21281 0.88995 1.00556 1.21323 1.17923 0.87521 0.83412 1.03446 1.42316 1.09359 1.04563 1.69824 1.16904 0.86356 0.80844 0.78675 1.90739 1.23966 1.73679 1.45711 1.22237 0.90185 0.87688 0.86772 1.68515 0.98404 1.40254 1.27852 1.18884 0.87027 0.83969 0.83430 1.41751 1.02467 1.11283 1.79617 1.67861 1.26033 1.12028 1.32522 1.18834 0.83457 0.86948 0.84639 1.45917 1.08379 0.99684 1.75664 1.21729 0.87058 0.93408 1.02020 1.21709 0.81526 0.97251 1.03403 1.68360 1.32333 1.04827 1.26329 1.49530 1.06526 1.01895 1.54921 1.19650 0.77821 0.89700 0.98931 1.21303 1.13382 1.31795 0.91319 0.91742 1.24907 0.95664 0.94887 0.98087 1.69911 1.19184 1.32524 1.31123 0.86426 0.78065 0.78437 0.83833 1.19888 1.20940 1.20024 1.77346 0.86099 1.21788 1.25291 0.91282 0.91084 0.91535 0.82016 0.73279 0.75188 0.74379 0.92647 0.89966 0.90926 0.90397 0.91479 0.91448 0.92460 0.93610 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.55 16 2 C 0.05 1.02 7.20 -82.46 -0.59 0.43 16 3 C -0.29 -6.03 9.58 -39.77 -0.38 -6.41 16 4 C 0.30 6.53 7.68 -152.78 -1.17 5.36 16 5 N -0.61 -11.88 5.40 -11.94 -0.06 -11.95 16 6 C 0.59 10.97 7.83 -11.91 -0.09 10.88 16 7 O -0.47 -9.39 14.03 5.40 0.08 -9.31 16 8 C 0.41 7.00 7.65 -156.48 -1.20 5.81 16 9 N -0.61 -9.56 9.76 -11.89 -0.12 -9.67 16 10 C 0.63 8.50 8.76 -322.22 -2.82 5.68 16 11 N -0.80 -7.35 9.05 29.84 0.27 -7.08 16 12 N -0.64 -8.47 9.27 -14.78 -0.14 -8.60 16 13 C 0.63 8.67 8.19 -322.21 -2.64 6.03 16 14 N -0.58 -5.99 3.36 -191.76 -0.64 -6.64 16 15 C 0.10 0.69 10.43 59.85 0.62 1.32 16 16 C 0.10 0.86 10.17 59.85 0.61 1.47 16 17 N -0.58 -9.34 9.46 -11.89 -0.11 -9.45 16 18 N -0.34 -8.18 3.62 -61.45 -0.22 -8.40 16 19 C 0.26 6.51 6.02 -5.19 -0.03 6.47 16 20 C -0.54 -14.68 9.39 -34.44 -0.32 -15.00 16 21 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 22 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 23 N -0.89 -24.36 13.29 55.43 0.74 -23.63 16 24 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 N -0.28 -6.55 12.56 33.64 0.42 -6.13 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.16 3.24 5.83 -52.49 -0.31 2.94 16 33 H 0.43 8.12 7.35 -40.82 -0.30 7.82 16 34 H 0.42 2.71 8.95 -40.82 -0.37 2.35 16 35 H 0.42 3.56 8.95 -40.82 -0.37 3.20 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.62 7.36 -51.93 -0.38 0.24 16 38 H 0.07 0.31 7.92 -51.93 -0.41 -0.10 16 39 H 0.08 0.38 7.79 -51.93 -0.40 -0.02 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.05 1.13 7.52 -51.93 -0.39 0.74 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -33.50 384.23 -12.19 -45.70 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.43 Total: 10.30 kcal Atomic # 6 Polarization: 30.94 SS G_CDS: -7.74 Total: 23.20 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: 0.13 Total: -91.56 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.50 -12.19 -45.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593893059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.077 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds