Wall clock time and date at job start Sat Apr 11 2020 07:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39715 * 125.77693 * 2 1 4 4 C 1.36172 * 107.85536 * 180.16637 * 3 2 1 5 5 N 1.39314 * 126.26517 * 179.84628 * 4 3 2 6 6 C 1.34774 * 119.99714 * 359.68646 * 5 4 3 7 7 O 1.21458 * 119.99993 * 359.97438 * 6 5 4 8 8 C 1.48755 * 119.99918 * 179.97438 * 6 5 4 9 9 N 1.32760 * 119.98562 * 0.02562 * 8 6 5 10 10 C 1.33013 * 120.01211 * 179.97438 * 9 8 6 11 11 N 1.38027 * 120.00106 * 179.97438 * 10 9 8 12 12 N 1.32855 * 119.98624 * 0.02562 * 10 9 8 13 13 C 1.32832 * 119.97493 * 359.97438 * 12 10 9 14 14 N 1.38027 * 120.00694 * 180.02562 * 13 12 10 15 15 C 1.46506 * 120.00022 * 0.02562 * 14 13 12 16 16 C 1.46499 * 119.99983 * 179.72831 * 14 13 12 17 17 N 1.32729 * 119.98732 * 180.27717 * 8 6 5 18 18 N 1.35832 * 107.46914 * 359.58005 * 4 3 2 19 19 C 1.46499 * 126.09384 * 180.26620 * 18 4 3 20 20 C 1.50701 * 109.47037 * 90.00045 * 19 18 4 21 21 H 1.07998 * 120.00187 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99793 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00145 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00243 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47289 * 59.99978 * 24 22 20 26 26 H 1.48501 * 109.47656 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.46993 * 300.00477 * 24 22 20 28 28 N 1.30842 * 125.76953 * 179.69514 * 2 1 3 29 29 H 1.08994 * 109.47274 * 270.28040 * 1 2 3 30 30 H 1.09004 * 109.46704 * 30.27615 * 1 2 3 31 31 H 1.09002 * 109.47508 * 150.27719 * 1 2 3 32 32 H 1.07996 * 126.06935 * 0.04143 * 3 2 1 33 33 H 0.97000 * 119.99528 * 179.68363 * 5 4 3 34 34 H 0.97009 * 119.99516 * 180.02562 * 11 10 9 35 35 H 0.96998 * 120.00484 * 0.02562 * 11 10 9 36 36 H 1.08999 * 109.46892 * 269.72268 * 15 14 13 37 37 H 1.09000 * 109.46803 * 29.71441 * 15 14 13 38 38 H 1.09000 * 109.47214 * 149.72234 * 15 14 13 39 39 H 1.09004 * 109.46973 * 180.28213 * 16 14 13 40 40 H 1.08995 * 109.47424 * 300.27601 * 16 14 13 41 41 H 1.08998 * 109.47492 * 60.28026 * 16 14 13 42 42 H 1.08997 * 109.46679 * 209.99912 * 19 18 4 43 43 H 1.09003 * 109.47581 * 329.99910 * 19 18 4 44 44 H 0.97003 * 120.00131 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.1335 0.0000 4 6 3.6195 0.7145 -0.0038 5 7 4.7492 1.5297 -0.0081 6 6 4.6126 2.8705 -0.0152 7 8 3.5046 3.3680 -0.0183 8 6 5.8188 3.7410 -0.0192 9 7 7.0298 3.1968 -0.0163 10 6 8.1088 3.9746 -0.0203 11 7 9.3676 3.4086 -0.0168 12 7 7.9744 5.2964 -0.0268 13 6 6.7626 5.8403 -0.0297 14 7 6.6222 7.2134 -0.0370 15 6 7.8100 8.0711 -0.0421 16 6 5.2856 7.8130 -0.0462 17 7 5.6841 5.0614 -0.0206 18 7 3.6088 -0.6438 0.0035 19 6 4.7857 -1.5161 0.0081 20 6 5.1892 -1.8077 1.4305 21 1 4.6251 -1.3858 2.2492 22 6 6.2779 -2.6139 1.6868 23 7 6.9646 -3.1281 0.6899 24 14 6.7778 -2.9760 3.4498 25 1 5.6578 -3.6514 4.1531 26 1 7.9709 -3.8601 3.4546 27 1 7.1023 -1.7036 4.1436 28 7 2.2718 -1.0616 0.0056 29 1 -0.3633 0.0050 1.0276 30 1 -0.3633 0.8876 -0.5181 31 1 -0.3634 -0.8925 -0.5095 32 1 1.9873 2.1597 0.0006 33 1 5.6340 1.1322 -0.0059 34 1 10.1545 3.9760 -0.0194 35 1 9.4656 2.4436 -0.0117 36 1 8.1020 8.2933 0.9843 37 1 8.6268 7.5575 -0.5491 38 1 7.5847 9.0005 -0.5651 39 1 5.3749 8.8994 -0.0561 40 1 4.7462 7.4848 -0.9347 41 1 4.7413 7.5013 0.8452 42 1 4.5476 -2.4501 -0.5007 43 1 5.6076 -1.0202 -0.5083 44 1 7.7308 -3.6950 0.8702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593893059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:51 Heat of formation + Delta-G solvation = 119.868595 kcal Electronic energy + Delta-G solvation = -29928.124749 eV Core-core repulsion = 25725.113836 eV Total energy + Delta-G solvation = -4203.010912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.90963 -42.32207 -40.55198 -38.45560 -36.54979 -36.39325 -35.67207 -34.24415 -33.79932 -32.76693 -30.84227 -30.08957 -29.10966 -27.80463 -27.64629 -26.62688 -24.73983 -23.65466 -22.97410 -21.36695 -21.17861 -20.23973 -19.34391 -18.85169 -18.29699 -17.70630 -17.49930 -17.29210 -16.85521 -16.65524 -16.58754 -16.15800 -15.74816 -15.57566 -15.42700 -15.32132 -15.29704 -14.58542 -14.40759 -14.03561 -13.60487 -13.48852 -13.39428 -13.32152 -13.16309 -13.10389 -12.90720 -12.83025 -12.70000 -12.35843 -12.27879 -12.02176 -11.81838 -11.71058 -11.26693 -10.90727 -10.73992 -10.67916 -10.08176 -9.64548 -9.39361 -9.13975 -8.34050 -6.51047 -0.76037 0.17780 0.79762 0.89118 1.37158 1.39087 1.43756 1.48362 1.58944 1.91323 1.97769 2.00730 2.34330 2.62936 2.80031 2.96224 3.22760 3.43912 3.81900 4.13908 4.19640 4.42183 4.51264 4.57611 4.59443 4.71093 4.73918 4.75760 4.85998 4.93089 4.94178 4.94667 4.97421 5.16732 5.19218 5.22018 5.27534 5.52703 5.78511 5.79364 5.92134 5.96494 6.01479 6.04879 6.18937 6.52856 6.58581 6.69447 6.98430 7.20085 7.30597 8.72508 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.009239 B = 0.003532 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.854752 B = 7925.716538 C =10371.914559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.061 3.939 3 C -0.296 4.296 4 C 0.294 3.706 5 N -0.612 5.612 6 C 0.596 3.404 7 O -0.489 6.489 8 C 0.404 3.596 9 N -0.627 5.627 10 C 0.622 3.378 11 N -0.778 5.778 12 N -0.636 5.636 13 C 0.608 3.392 14 N -0.572 5.572 15 C 0.096 3.904 16 C 0.100 3.900 17 N -0.599 5.599 18 N -0.365 5.365 19 C 0.273 3.727 20 C -0.558 4.558 21 H 0.047 0.953 22 C 0.030 3.970 23 N -0.911 5.911 24 Si 0.967 3.033 25 H -0.277 1.277 26 H -0.270 1.270 27 H -0.269 1.269 28 N -0.321 5.321 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.172 0.828 33 H 0.428 0.572 34 H 0.431 0.569 35 H 0.428 0.572 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.031 0.969 43 H 0.045 0.955 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 22.566 -2.528 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.104 4.104 3 C -0.328 4.328 4 C 0.072 3.928 5 N -0.260 5.260 6 C 0.378 3.622 7 O -0.358 6.358 8 C 0.120 3.880 9 N -0.367 5.367 10 C 0.254 3.746 11 N -0.329 5.329 12 N -0.378 5.378 13 C 0.244 3.756 14 N -0.288 5.288 15 C -0.045 4.045 16 C -0.042 4.042 17 N -0.336 5.336 18 N -0.151 5.151 19 C 0.154 3.846 20 C -0.596 4.596 21 H 0.065 0.935 22 C -0.172 4.172 23 N -0.549 5.549 24 Si 0.791 3.209 25 H -0.202 1.202 26 H -0.194 1.194 27 H -0.194 1.194 28 N -0.146 5.146 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.189 0.811 33 H 0.267 0.733 34 H 0.265 0.735 35 H 0.262 0.738 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.137 0.863 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.795 21.771 -2.585 22.250 hybrid contribution 1.441 -0.290 0.778 1.663 sum 5.236 21.481 -1.807 22.184 Atomic orbital electron populations 1.20249 0.83594 1.04223 1.03847 1.22879 0.98841 0.89740 0.98974 1.21507 0.88729 1.01122 1.21423 1.18268 0.88740 0.82973 1.02835 1.42360 1.08761 1.04805 1.70051 1.17174 0.86974 0.80461 0.77603 1.90700 1.24890 1.73863 1.46328 1.21757 0.89938 0.87940 0.88371 1.68460 0.98584 1.40848 1.28775 1.19226 0.87620 0.84229 0.83502 1.41739 1.01569 1.11812 1.77802 1.67994 1.25429 1.11594 1.32749 1.19280 0.83206 0.88264 0.84889 1.46372 1.10215 0.98564 1.73661 1.21982 0.85670 0.93870 1.02997 1.21867 0.80528 0.99505 1.02251 1.68305 1.33592 1.04522 1.27177 1.49344 1.06444 1.02418 1.56901 1.19234 0.78531 0.88943 0.97843 1.21379 1.13941 1.32665 0.91595 0.93469 1.25642 0.95303 0.94287 1.01974 1.69983 1.19433 1.32584 1.32912 0.85477 0.77889 0.78515 0.79007 1.20234 1.19422 1.19419 1.77307 0.86162 1.23532 1.27554 0.89559 0.88409 0.90509 0.81127 0.73266 0.73471 0.73776 0.91758 0.90654 0.87639 0.86294 0.92508 0.92721 0.95083 0.93687 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.69 10.44 71.24 0.74 -0.94 16 2 C 0.06 2.46 7.20 43.06 0.31 2.77 16 3 C -0.30 -12.37 9.58 22.15 0.21 -12.16 16 4 C 0.29 13.17 7.68 131.21 1.01 14.18 16 5 N -0.61 -24.53 5.40 -310.02 -1.68 -26.21 16 6 C 0.60 22.65 7.83 87.06 0.68 23.34 16 7 O -0.49 -19.71 14.03 -3.58 -0.05 -19.76 16 8 C 0.40 13.89 7.65 137.58 1.05 14.94 16 9 N -0.63 -19.75 9.76 -191.53 -1.87 -21.62 16 10 C 0.62 16.29 8.76 261.28 2.29 18.57 16 11 N -0.78 -13.33 9.05 -59.50 -0.54 -13.87 16 12 N -0.64 -16.11 9.27 -200.68 -1.86 -17.97 16 13 C 0.61 16.40 8.19 261.28 2.14 18.54 16 14 N -0.57 -10.83 3.36 -760.61 -2.56 -13.38 16 15 C 0.10 1.06 10.43 127.77 1.33 2.39 16 16 C 0.10 1.48 10.17 127.77 1.30 2.78 16 17 N -0.60 -19.27 9.46 -191.53 -1.81 -21.08 16 18 N -0.37 -18.06 3.62 -348.34 -1.26 -19.32 16 19 C 0.27 14.46 6.02 85.63 0.52 14.98 16 20 C -0.56 -31.20 9.39 25.60 0.24 -30.96 16 21 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 22 C 0.03 1.61 5.46 84.65 0.46 2.07 16 23 N -0.91 -50.29 13.29 21.45 0.28 -50.01 16 24 Si 0.97 42.78 29.54 68.60 2.03 44.80 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 28 N -0.32 -15.34 12.56 -47.48 -0.60 -15.94 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.17 6.80 5.83 -2.91 -0.02 6.78 16 33 H 0.43 16.96 7.35 -92.71 -0.68 16.27 16 34 H 0.43 4.84 8.95 -92.70 -0.83 4.01 16 35 H 0.43 6.75 8.95 -92.71 -0.83 5.92 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.97 7.36 -2.39 -0.02 0.95 16 38 H 0.11 0.49 7.92 -2.39 -0.02 0.48 16 39 H 0.12 0.75 7.79 -2.38 -0.02 0.74 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.05 2.34 7.52 -2.39 -0.02 2.32 16 44 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -73.95 384.23 1.14 -72.81 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: -1.24 Total: 31.05 kcal Atomic # 6 Polarization: 58.21 SS G_CDS: 12.29 Total: 70.49 kcal Atomic # 7 Polarization: -187.50 SS G_CDS: -11.89 Total: -199.39 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.05 Total: -19.76 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.95 1.14 -72.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593893059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.678 kcal (2) G-P(sol) polarization free energy of solvation -73.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds