Wall clock time and date at job start Sat Apr 11 2020 07:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47096 * 2 1 4 4 O 1.42894 * 109.49888 * 300.00328 * 3 2 1 5 5 C 1.53043 * 109.49886 * 179.97438 * 3 2 1 6 6 C 1.53039 * 109.53812 * 178.65458 * 5 3 2 7 7 C 1.53194 * 109.31147 * 61.36412 * 6 5 3 8 8 N 1.46922 * 108.77951 * 305.36357 * 7 6 5 9 9 C 1.34776 * 120.63526 * 233.63468 * 8 7 6 10 10 O 1.21363 * 120.00100 * 171.17653 * 9 8 7 11 11 C 1.49357 * 119.99872 * 351.17403 * 9 8 7 12 12 O 1.21375 * 119.99860 * 353.28878 * 11 9 8 13 13 N 1.34773 * 120.00318 * 173.29375 * 11 9 8 14 14 C 1.39738 * 120.00295 * 183.98163 * 13 11 9 15 15 C 1.39349 * 119.94898 * 323.98902 * 14 13 11 16 16 C 1.38471 * 120.41952 * 179.72112 * 15 14 13 17 17 C 1.37695 * 120.32885 * 0.56027 * 16 15 14 18 18 C 1.40748 * 119.89807 * 359.72127 * 17 16 15 19 19 C 1.41404 * 120.20869 * 179.97438 * 18 17 16 20 20 H 1.08006 * 120.00312 * 173.22972 * 19 18 17 21 21 C 1.39929 * 120.00180 * 353.22352 * 19 18 17 22 22 N 1.30827 * 119.99796 * 321.81426 * 21 19 18 23 23 Si 1.86806 * 120.00084 * 141.81182 * 21 19 18 24 24 H 1.48500 * 109.47186 * 95.00100 * 23 21 19 25 25 H 1.48501 * 109.46785 * 214.99938 * 23 21 19 26 26 H 1.48494 * 109.46802 * 334.99871 * 23 21 19 27 27 C 1.38303 * 119.95417 * 144.26903 * 14 13 11 28 28 C 1.46996 * 118.75354 * 53.60830 * 8 7 6 29 29 H 1.08999 * 109.47343 * 59.99984 * 1 2 3 30 30 H 1.09002 * 109.46771 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46940 * 299.99325 * 1 2 3 32 32 H 1.09000 * 109.47413 * 240.00492 * 2 1 3 33 33 H 1.08999 * 109.47343 * 120.00016 * 2 1 3 34 34 H 0.96702 * 113.99991 * 60.00052 * 4 3 2 35 35 H 1.09001 * 109.45887 * 298.67468 * 5 3 2 36 36 H 1.08996 * 109.45878 * 58.63057 * 5 3 2 37 37 H 1.08996 * 109.50128 * 181.31720 * 6 5 3 38 38 H 1.09002 * 109.49575 * 301.38284 * 6 5 3 39 39 H 1.08994 * 109.58952 * 65.15941 * 7 6 5 40 40 H 1.09007 * 109.58158 * 185.43819 * 7 6 5 41 41 H 0.97005 * 119.99913 * 3.97159 * 13 11 9 42 42 H 1.07997 * 119.78778 * 359.97438 * 15 14 13 43 43 H 1.08001 * 119.83359 * 180.28093 * 16 15 14 44 44 H 1.08002 * 120.05249 * 179.74585 * 17 16 15 45 45 H 0.97005 * 119.99909 * 179.97438 * 22 21 19 46 46 H 1.08001 * 120.16538 * 359.97280 * 27 14 13 47 47 H 1.09005 * 109.63271 * 186.61897 * 28 8 7 48 48 H 1.09000 * 109.57984 * 66.17196 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5639 2.1167 -1.1665 5 6 3.5704 1.4433 0.0006 6 6 4.0815 2.8854 -0.0332 7 6 3.5971 3.6241 1.2184 8 7 2.1352 3.5039 1.3024 9 6 1.3617 4.6010 1.4229 10 8 0.1554 4.5061 1.3307 11 6 1.9893 5.9337 1.6701 12 8 3.1815 6.0128 1.8836 13 7 1.2318 7.0483 1.6561 14 6 1.8307 8.3021 1.8044 15 6 2.9249 8.4543 2.6537 16 6 3.5295 9.6910 2.8035 17 6 3.0483 10.7871 2.1231 18 6 1.9402 10.6501 1.2662 19 6 1.4403 11.7715 0.5647 20 1 0.6621 11.6439 -0.1734 21 6 1.9537 13.0466 0.8267 22 7 2.2601 13.3893 2.0515 23 14 2.2016 14.2593 -0.5724 24 1 1.0148 15.1459 -0.6751 25 1 3.4109 15.0796 -0.3078 26 1 2.3763 13.5164 -1.8462 27 6 1.3330 9.3913 1.1125 28 6 1.5318 2.1645 1.2520 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.6000 2.1552 -1.2327 35 1 3.9334 0.9504 0.9026 36 1 3.9341 0.9083 -0.8766 37 1 5.1713 2.8847 -0.0564 38 1 3.6991 3.3861 -0.9227 39 1 4.0518 3.1799 2.1038 40 1 3.8762 4.6758 1.1528 41 1 0.2707 6.9802 1.5430 42 1 3.3064 7.6014 3.1953 43 1 4.3798 9.7973 3.4608 44 1 3.5207 11.7505 2.2464 45 1 2.6164 14.2731 2.2332 46 1 0.4824 9.2754 0.4571 47 1 0.4463 2.2533 1.2073 48 1 1.8181 1.6012 2.1401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602071575.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:08 Heat of formation + Delta-G solvation = -106.664437 kcal Electronic energy + Delta-G solvation = -30583.838713 eV Core-core repulsion = 26409.959432 eV Total energy + Delta-G solvation = -4173.879281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.30778 -40.82815 -39.53800 -38.89077 -37.12113 -36.16652 -34.98283 -33.93428 -33.39635 -31.85919 -30.48525 -30.13675 -27.69320 -27.18925 -25.30163 -24.99529 -22.98494 -22.67548 -22.28139 -21.27269 -20.76201 -19.59156 -18.75281 -18.25568 -17.76351 -17.41462 -17.11975 -16.81103 -16.59614 -16.27106 -16.20217 -15.61321 -15.43306 -15.22244 -14.96903 -14.72704 -14.65224 -14.56568 -14.11913 -13.97231 -13.62715 -13.57064 -13.45199 -13.23938 -13.02403 -12.91259 -12.74408 -12.52815 -12.48343 -12.20364 -11.99131 -11.97558 -11.88968 -11.84296 -11.58159 -11.33319 -11.25791 -11.03592 -10.68006 -10.18834 -9.75935 -9.56856 -8.90279 -8.84795 -6.31263 0.10446 0.96361 1.01473 1.23248 1.37613 1.48014 1.60928 2.05540 2.17136 2.40426 2.57582 3.17912 3.27492 3.57927 3.69351 3.74028 3.79168 4.04188 4.19040 4.26184 4.39240 4.40977 4.48248 4.55740 4.61458 4.66490 4.80752 4.85009 4.85957 4.92715 5.00117 5.01094 5.06826 5.09730 5.11800 5.16718 5.22338 5.28169 5.30226 5.38294 5.43609 5.65937 5.76083 5.93276 6.01837 6.09999 6.17455 6.36910 6.61997 6.63392 6.74077 6.84685 6.88393 7.02972 8.10860 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.022060 B = 0.002205 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.932634 B =12694.849949 C =12909.097779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.139 4.139 3 C 0.120 3.880 4 O -0.570 6.570 5 C -0.106 4.106 6 C -0.127 4.127 7 C 0.065 3.935 8 N -0.565 5.565 9 C 0.516 3.484 10 O -0.543 6.543 11 C 0.499 3.501 12 O -0.510 6.510 13 N -0.630 5.630 14 C 0.164 3.836 15 C -0.253 4.253 16 C -0.085 4.085 17 C -0.224 4.224 18 C 0.094 3.906 19 C -0.497 4.497 20 H 0.080 0.920 21 C 0.054 3.946 22 N -0.781 5.781 23 Si 0.973 3.027 24 H -0.256 1.256 25 H -0.261 1.261 26 H -0.261 1.261 27 C -0.271 4.271 28 C 0.076 3.924 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.380 0.620 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.421 0.579 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.297 0.703 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.977 -23.477 -2.590 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.177 4.177 3 C 0.079 3.921 4 O -0.377 6.377 5 C -0.143 4.143 6 C -0.165 4.165 7 C -0.056 4.056 8 N -0.297 5.297 9 C 0.298 3.702 10 O -0.422 6.422 11 C 0.282 3.718 12 O -0.387 6.387 13 N -0.275 5.275 14 C 0.071 3.929 15 C -0.274 4.274 16 C -0.104 4.104 17 C -0.243 4.243 18 C 0.091 3.909 19 C -0.523 4.523 20 H 0.098 0.902 21 C -0.168 4.168 22 N -0.403 5.403 23 Si 0.792 3.208 24 H -0.180 1.180 25 H -0.186 1.186 26 H -0.185 1.185 27 C -0.293 4.293 28 C -0.045 4.045 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.230 0.770 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.134 0.866 41 H 0.258 0.742 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.108 0.892 46 H 0.121 0.879 47 H 0.111 0.889 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.875 -23.288 -2.414 23.487 hybrid contribution -1.094 0.758 -0.306 1.366 sum 0.781 -22.529 -2.720 22.706 Atomic orbital electron populations 1.21885 0.95235 1.02986 1.01946 1.22103 0.96754 0.94587 1.04220 1.21706 0.95383 0.91399 0.83637 1.86551 1.27442 1.79854 1.43896 1.21618 0.91776 0.96706 1.04204 1.21817 1.01706 0.96068 0.96934 1.22904 0.77146 1.06171 0.99329 1.47874 1.08490 1.05266 1.68082 1.19729 0.86658 0.85254 0.78589 1.90710 1.14411 1.86069 1.50966 1.20482 0.86860 0.85954 0.78531 1.90516 1.15085 1.85875 1.47186 1.43136 1.11833 1.03940 1.68613 1.17453 0.95690 0.82981 0.96767 1.20447 1.02534 0.97483 1.06899 1.20780 0.98584 0.92474 0.98550 1.21389 1.00394 0.98319 1.04208 1.17642 0.90851 0.92221 0.90233 1.19766 1.20562 0.91707 1.20295 0.90168 1.26865 0.91302 1.00614 0.98053 1.69965 1.26610 1.21606 1.22158 0.85356 0.79450 0.77114 0.78879 1.18042 1.18554 1.18467 1.20659 1.06229 0.93180 1.09209 1.22801 1.00095 0.81286 1.00316 0.92698 0.91100 0.92453 0.90460 0.89075 0.77048 0.88165 0.90306 0.88840 0.93244 0.89373 0.86618 0.74170 0.87084 0.86929 0.87338 0.89192 0.87897 0.88860 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.26 71.98 0.67 -0.92 16 2 C -0.14 -1.35 5.21 30.59 0.16 -1.20 16 3 C 0.12 1.80 0.75 -10.71 -0.01 1.79 16 4 O -0.57 -11.49 12.13 -148.98 -1.81 -13.30 16 5 C -0.11 -1.47 4.92 30.62 0.15 -1.32 16 6 C -0.13 -2.41 5.94 30.67 0.18 -2.23 16 7 C 0.07 1.49 5.97 86.36 0.52 2.00 16 8 N -0.57 -13.85 2.92 -820.40 -2.39 -16.24 16 9 C 0.52 16.05 7.73 87.24 0.67 16.72 16 10 O -0.54 -18.03 15.93 -3.29 -0.05 -18.08 16 11 C 0.50 18.11 7.57 87.24 0.66 18.77 16 12 O -0.51 -19.78 10.68 -3.32 -0.04 -19.81 16 13 N -0.63 -24.44 5.32 -304.98 -1.62 -26.06 16 14 C 0.16 7.60 6.26 38.16 0.24 7.84 16 15 C -0.25 -12.01 8.69 22.59 0.20 -11.81 16 16 C -0.09 -4.15 10.01 22.20 0.22 -3.92 16 17 C -0.22 -11.95 8.93 22.75 0.20 -11.75 16 18 C 0.09 5.11 5.70 -21.31 -0.12 4.99 16 19 C -0.50 -26.51 8.95 23.46 0.21 -26.30 16 20 H 0.08 4.15 8.05 -2.91 -0.02 4.13 16 21 C 0.05 2.62 4.85 85.25 0.41 3.04 16 22 N -0.78 -39.09 11.24 21.82 0.25 -38.84 16 23 Si 0.97 36.62 29.68 68.60 2.04 38.66 16 24 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 25 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 26 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 27 C -0.27 -13.62 9.71 22.86 0.22 -13.40 16 28 C 0.08 1.35 4.85 86.35 0.42 1.77 16 29 H 0.05 0.57 6.78 -2.39 -0.02 0.55 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.60 6.56 -2.39 -0.02 0.59 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 34 H 0.38 6.33 7.34 -74.06 -0.54 5.78 16 35 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.21 7.61 -2.39 -0.02 1.19 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.12 3.41 4.33 -46.46 -0.20 3.21 16 41 H 0.42 14.65 8.30 -92.70 -0.77 13.88 16 42 H 0.11 5.07 6.30 -2.91 -0.02 5.05 16 43 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 44 H 0.11 5.91 5.77 -2.91 -0.02 5.89 16 45 H 0.30 13.08 8.30 -92.70 -0.77 12.32 16 46 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 47 H 0.09 1.80 5.62 -2.38 -0.01 1.79 16 48 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -64.47 380.73 0.89 -63.58 By element: Atomic # 1 Polarization: 46.51 SS G_CDS: -0.49 Total: 46.02 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 5.00 Total: -15.92 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -3.77 Total: -81.15 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -1.90 Total: -51.19 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.04 Total: 38.66 kcal Total: -64.47 0.89 -63.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602071575.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.083 kcal (2) G-P(sol) polarization free energy of solvation -64.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds