Wall clock time and date at job start Sat Apr 11 2020 07:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47003 * 2 1 4 4 O 1.42902 * 109.52431 * 65.07867 * 3 2 1 5 5 C 1.53039 * 109.49788 * 185.16012 * 3 2 1 6 6 C 1.53039 * 109.53649 * 181.31822 * 5 3 2 7 7 C 1.53632 * 109.24338 * 298.50977 * 6 5 3 8 8 N 1.46931 * 108.53926 * 54.85787 * 7 6 5 9 9 C 1.34779 * 120.62723 * 126.36860 * 8 7 6 10 10 O 1.21358 * 119.99584 * 186.53491 * 9 8 7 11 11 C 1.49349 * 120.00049 * 6.53714 * 9 8 7 12 12 O 1.21377 * 120.00506 * 6.33516 * 11 9 8 13 13 N 1.34781 * 120.00064 * 186.33458 * 11 9 8 14 14 C 1.39734 * 120.00336 * 184.55607 * 13 11 9 15 15 C 1.39338 * 119.95826 * 144.72463 * 14 13 11 16 16 C 1.38464 * 120.42757 * 179.97438 * 15 14 13 17 17 C 1.37695 * 120.32725 * 359.97438 * 16 15 14 18 18 C 1.40745 * 119.89978 * 0.02562 * 17 16 15 19 19 C 1.41411 * 120.21229 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00253 * 150.43995 * 19 18 17 21 21 C 1.39932 * 119.99834 * 330.43906 * 19 18 17 22 22 N 1.30822 * 119.99987 * 169.36935 * 21 19 18 23 23 Si 1.86797 * 119.99904 * 349.37015 * 21 19 18 24 24 H 1.48507 * 109.46932 * 93.51373 * 23 21 19 25 25 H 1.48501 * 109.47072 * 213.51425 * 23 21 19 26 26 H 1.48497 * 109.47421 * 333.51825 * 23 21 19 27 27 C 1.38313 * 119.94997 * 324.44615 * 14 13 11 28 28 C 1.46922 * 118.74049 * 306.09673 * 8 7 6 29 29 H 1.08998 * 109.46826 * 299.99971 * 1 2 3 30 30 H 1.08996 * 109.47090 * 59.99868 * 1 2 3 31 31 H 1.09001 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47524 * 240.00472 * 2 1 3 33 33 H 1.09004 * 109.47013 * 119.99748 * 2 1 3 34 34 H 0.96700 * 114.00492 * 299.92472 * 4 3 2 35 35 H 1.08994 * 109.46035 * 301.33728 * 5 3 2 36 36 H 1.08992 * 109.45807 * 61.31245 * 5 3 2 37 37 H 1.09000 * 109.49807 * 58.58636 * 6 5 3 38 38 H 1.09000 * 109.49695 * 178.65312 * 6 5 3 39 39 H 1.08992 * 109.73900 * 295.12161 * 7 6 5 40 40 H 1.08994 * 109.66362 * 174.54760 * 7 6 5 41 41 H 0.97005 * 119.99573 * 4.82292 * 13 11 9 42 42 H 1.08008 * 119.78853 * 0.02562 * 15 14 13 43 43 H 1.08001 * 119.84198 * 179.97438 * 16 15 14 44 44 H 1.08005 * 120.05581 * 180.02562 * 17 16 15 45 45 H 0.97000 * 120.00233 * 179.97438 * 22 21 19 46 46 H 1.08000 * 120.16121 * 0.02562 * 27 14 13 47 47 H 1.08997 * 109.58813 * 173.65001 * 28 8 7 48 48 H 1.09010 * 109.58650 * 293.93163 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6641 2.0820 1.2214 5 6 3.5649 1.4452 -0.1297 6 6 4.0788 2.8864 -0.0968 7 6 3.4913 3.6608 -1.2865 8 7 2.0275 3.5414 -1.2447 9 6 1.2479 4.6406 -1.2682 10 8 0.0486 4.5373 -1.1139 11 6 1.8600 5.9857 -1.4841 12 8 3.0400 6.0795 -1.7525 13 7 1.1021 7.0954 -1.3809 14 6 1.6509 8.3462 -1.6757 15 6 0.8656 9.3254 -2.2808 16 6 1.3993 10.5683 -2.5768 17 6 2.7129 10.8506 -2.2756 18 6 3.5185 9.8717 -1.6643 19 6 4.8682 10.1547 -1.3516 20 1 5.3419 9.6670 -0.5125 21 6 5.5902 11.0667 -2.1295 22 7 6.7616 11.4870 -1.7262 23 14 4.8813 11.6841 -3.7437 24 1 4.1511 12.9558 -3.5094 25 1 5.9834 11.9172 -4.7113 26 1 3.9459 10.6704 -4.2935 27 6 2.9712 8.6126 -1.3612 28 6 1.4295 2.2008 -1.1828 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.7091 2.1185 1.3687 35 1 4.0007 0.8853 0.6976 36 1 3.8498 0.9798 -1.0732 37 1 3.7729 3.3605 0.8358 38 1 5.1666 2.8864 -0.1652 39 1 3.8656 3.2408 -2.2201 40 1 3.7744 4.7110 -1.2164 41 1 0.1768 7.0262 -1.0981 42 1 -0.1662 9.1138 -2.5198 43 1 0.7822 11.3202 -3.0462 44 1 3.1245 11.8217 -2.5080 45 1 7.2623 12.1189 -2.2656 46 1 3.5797 7.8558 -0.8885 47 1 0.3518 2.2874 -1.0444 48 1 1.6370 1.6650 -2.1092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602071577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:11 Heat of formation + Delta-G solvation = -81.913546 kcal Electronic energy + Delta-G solvation = -30962.185715 eV Core-core repulsion = 26789.379714 eV Total energy + Delta-G solvation = -4172.806001 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.14039 -39.75357 -38.39912 -37.45977 -36.04938 -34.60969 -33.34903 -33.20406 -32.53081 -30.37589 -29.52350 -29.00263 -26.66146 -25.27971 -24.59032 -23.86121 -21.78294 -21.42033 -20.91031 -20.32805 -19.61847 -18.03616 -17.37361 -17.21651 -16.74020 -16.07975 -15.90894 -15.64695 -15.50129 -14.99087 -14.73477 -14.56248 -14.44163 -14.14560 -13.89850 -13.75569 -13.44820 -13.10569 -12.82232 -12.80236 -12.77063 -12.63257 -12.34821 -12.10304 -11.88315 -11.72774 -11.65993 -11.39516 -11.18299 -11.03141 -10.88958 -10.72648 -10.68285 -10.60015 -10.31526 -10.05201 -9.70965 -9.42841 -9.16571 -8.85489 -8.76848 -7.72342 -7.26316 -6.92318 -4.51096 1.42143 2.30001 2.56092 2.62040 3.10634 3.23749 3.32071 3.35987 3.59771 3.93414 3.99080 4.22872 4.36845 4.45242 4.47807 4.55205 4.78194 4.86023 4.97313 5.01207 5.22142 5.26199 5.36068 5.39315 5.47604 5.52872 5.54358 5.66419 5.70054 5.80826 5.83151 5.92504 5.99018 6.14289 6.20526 6.26225 6.33758 6.54608 6.65487 6.74020 7.00239 7.13002 7.16449 7.39746 7.43027 7.53134 7.65491 7.83745 7.88242 7.96472 8.30035 8.36956 8.60642 8.78576 10.09956 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.002664 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.358660 B =10507.487758 C =11487.119293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.147 4.147 3 C 0.121 3.879 4 O -0.548 6.548 5 C -0.107 4.107 6 C -0.131 4.131 7 C 0.060 3.940 8 N -0.573 5.573 9 C 0.515 3.485 10 O -0.531 6.531 11 C 0.500 3.500 12 O -0.486 6.486 13 N -0.632 5.632 14 C 0.152 3.848 15 C -0.257 4.257 16 C -0.064 4.064 17 C -0.245 4.245 18 C 0.100 3.900 19 C -0.435 4.435 20 H 0.092 0.908 21 C 0.080 3.920 22 N -0.812 5.812 23 Si 0.916 3.084 24 H -0.272 1.272 25 H -0.295 1.295 26 H -0.240 1.240 27 C -0.192 4.192 28 C 0.081 3.919 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.374 0.626 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.151 0.849 41 H 0.413 0.587 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.285 0.715 46 H 0.120 0.880 47 H 0.099 0.901 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 -19.982 1.136 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.186 4.186 3 C 0.080 3.920 4 O -0.354 6.354 5 C -0.145 4.145 6 C -0.170 4.170 7 C -0.061 4.061 8 N -0.305 5.305 9 C 0.298 3.702 10 O -0.408 6.408 11 C 0.282 3.718 12 O -0.361 6.361 13 N -0.277 5.277 14 C 0.061 3.939 15 C -0.279 4.279 16 C -0.083 4.083 17 C -0.264 4.264 18 C 0.096 3.904 19 C -0.464 4.464 20 H 0.110 0.890 21 C -0.138 4.138 22 N -0.436 5.436 23 Si 0.744 3.256 24 H -0.199 1.199 25 H -0.223 1.223 26 H -0.163 1.163 27 C -0.213 4.213 28 C -0.042 4.042 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.222 0.778 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.168 0.832 41 H 0.249 0.751 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.096 0.904 46 H 0.138 0.862 47 H 0.117 0.883 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.892 -19.814 1.080 21.355 hybrid contribution -1.231 0.084 -0.677 1.407 sum -9.123 -19.730 0.403 21.741 Atomic orbital electron populations 1.21885 0.95413 1.02398 1.02222 1.22179 0.96627 0.96414 1.03353 1.21562 0.95673 0.90579 0.84227 1.86575 1.28363 1.81092 1.39403 1.21558 0.92221 0.98227 1.02447 1.21942 1.00496 0.94817 0.99698 1.23196 0.77115 1.07812 0.97939 1.47776 1.08053 1.04672 1.70031 1.20109 0.86615 0.85677 0.77796 1.90708 1.14549 1.86529 1.48970 1.20030 0.86969 0.85433 0.79397 1.90509 1.14604 1.85197 1.45824 1.43125 1.15527 1.04846 1.64151 1.17530 0.94062 0.82710 0.99645 1.20087 0.99150 0.95392 1.13222 1.20352 0.94906 0.95092 0.97912 1.21012 0.94512 0.99134 1.11765 1.17629 0.93459 0.89865 0.89436 1.19505 0.94535 1.19504 1.12839 0.89048 1.26174 0.94451 0.93190 0.99970 1.69639 1.12036 1.24556 1.37403 0.86268 0.78232 0.80255 0.80804 1.19854 1.22276 1.16328 1.21100 0.93913 0.97151 1.09144 1.22495 1.00047 0.82730 0.98941 0.92432 0.92095 0.92119 0.90781 0.90628 0.77806 0.90971 0.90598 0.90512 0.90409 0.91405 0.83235 0.75081 0.88333 0.88246 0.88268 0.90411 0.86207 0.88293 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.22 37.16 0.34 -0.60 16 2 C -0.15 -0.94 5.23 -26.73 -0.14 -1.08 16 3 C 0.12 1.05 0.76 -90.50 -0.07 0.98 16 4 O -0.55 -5.71 12.17 -35.23 -0.43 -6.14 16 5 C -0.11 -0.93 4.92 -26.69 -0.13 -1.06 16 6 C -0.13 -1.41 5.96 -26.38 -0.16 -1.57 16 7 C 0.06 0.75 6.07 -3.48 -0.02 0.73 16 8 N -0.57 -7.33 2.91 -173.05 -0.50 -7.84 16 9 C 0.52 7.86 7.74 -11.63 -0.09 7.77 16 10 O -0.53 -8.48 15.93 5.49 0.09 -8.40 16 11 C 0.50 8.75 7.60 -11.63 -0.09 8.66 16 12 O -0.49 -9.49 10.57 5.47 0.06 -9.43 16 13 N -0.63 -11.15 5.31 -10.34 -0.05 -11.20 16 14 C 0.15 3.20 6.28 -83.82 -0.53 2.68 16 15 C -0.26 -5.20 9.97 -39.09 -0.39 -5.59 16 16 C -0.06 -1.35 10.01 -39.70 -0.40 -1.75 16 17 C -0.24 -5.85 6.87 -38.83 -0.27 -6.12 16 18 C 0.10 2.55 5.19 -106.85 -0.56 2.00 16 19 C -0.44 -11.88 9.62 -37.74 -0.36 -12.24 16 20 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 21 C 0.08 2.13 5.48 -17.35 -0.10 2.03 16 22 N -0.81 -21.80 13.93 55.55 0.77 -21.02 16 23 Si 0.92 21.05 24.34 -169.99 -4.14 16.91 16 24 H -0.27 -6.00 6.74 56.52 0.38 -5.62 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.24 -5.66 6.43 56.52 0.36 -5.29 16 27 C -0.19 -4.58 8.43 -38.66 -0.33 -4.91 16 28 C 0.08 0.80 4.67 -3.71 -0.02 0.78 16 29 H 0.06 0.32 6.89 -51.93 -0.36 -0.03 16 30 H 0.06 0.37 6.48 -51.93 -0.34 0.03 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.37 3.08 7.54 45.56 0.34 3.42 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.97 7.61 -51.93 -0.40 0.58 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.15 2.29 4.17 -55.54 -0.23 2.06 16 41 H 0.41 6.24 8.33 -40.82 -0.34 5.90 16 42 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 43 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.10 2.35 4.09 -52.48 -0.21 2.14 16 45 H 0.29 6.94 8.30 -40.82 -0.34 6.60 16 46 H 0.12 2.91 6.24 -52.49 -0.33 2.58 16 47 H 0.10 1.01 5.56 -51.93 -0.29 0.72 16 48 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -30.00 373.98 -7.85 -37.85 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -5.99 Total: 12.92 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -3.29 Total: -9.28 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.22 Total: -40.06 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.28 Total: -23.97 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.14 Total: 16.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.00 -7.85 -37.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602071577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.063 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds