Wall clock time and date at job start Sat Apr 11 2020 07:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 110.28898 * 2 1 4 4 O 1.20821 * 120.00116 * 119.32168 * 3 2 1 5 5 O 1.34226 * 119.99961 * 299.32922 * 3 2 1 6 6 C 1.54260 * 110.32548 * 237.87102 * 2 1 3 7 7 C 1.54378 * 105.06270 * 241.10536 * 6 2 1 8 8 N 1.48565 * 104.59463 * 23.85138 * 7 6 2 9 9 C 1.46901 * 110.99753 * 200.95957 * 8 7 6 10 10 C 1.50700 * 109.46846 * 62.45448 * 9 8 7 11 11 O 1.21282 * 120.00271 * 352.99979 * 10 9 8 12 12 N 1.34784 * 119.99248 * 173.00410 * 10 9 8 13 13 C 1.46505 * 119.99319 * 184.81929 * 12 10 9 14 14 C 1.50699 * 109.46701 * 269.99582 * 13 12 10 15 15 H 1.07998 * 120.00637 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99643 * 179.72762 * 14 13 12 17 17 N 1.31519 * 119.99977 * 0.27461 * 16 14 13 18 18 Si 1.86799 * 120.00086 * 180.27782 * 16 14 13 19 19 H 1.48508 * 109.47185 * 59.99759 * 18 16 14 20 20 H 1.48494 * 109.47110 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46956 * 300.00149 * 18 16 14 22 22 C 1.39921 * 120.00453 * 4.81548 * 12 10 9 23 23 C 1.38872 * 120.07072 * 266.84455 * 22 12 10 24 24 C 1.38116 * 119.92587 * 179.69840 * 23 22 12 25 25 C 1.38280 * 120.07186 * 0.57578 * 24 23 22 26 26 C 1.38284 * 120.14148 * 359.72495 * 25 24 23 27 27 C 1.38114 * 120.06825 * 359.97270 * 26 25 24 28 28 C 1.48556 * 104.21943 * 320.52013 * 8 7 6 29 29 H 1.09007 * 109.47121 * 180.67378 * 1 2 3 30 30 H 1.08994 * 109.47153 * 300.67183 * 1 2 3 31 31 H 1.08998 * 109.47178 * 60.67785 * 1 2 3 32 32 H 0.96699 * 117.00306 * 179.97438 * 5 3 2 33 33 H 1.09003 * 110.32651 * 122.20794 * 6 2 1 34 34 H 1.09002 * 110.32075 * 0.02562 * 6 2 1 35 35 H 1.08998 * 110.41349 * 265.07353 * 7 6 2 36 36 H 1.09004 * 110.41159 * 142.63098 * 7 6 2 37 37 H 1.08999 * 109.47174 * 302.44911 * 9 8 7 38 38 H 1.08998 * 109.46569 * 182.45213 * 9 8 7 39 39 H 1.08998 * 109.46924 * 149.99787 * 13 12 10 40 40 H 1.08994 * 109.46993 * 29.99909 * 13 12 10 41 41 H 0.96997 * 119.99863 * 180.02562 * 17 16 14 42 42 H 1.07994 * 120.03516 * 359.97438 * 23 22 12 43 43 H 1.08004 * 119.96396 * 180.29965 * 24 23 22 44 44 H 1.07999 * 119.92880 * 179.74293 * 25 24 23 45 45 H 1.08001 * 119.96718 * 180.02562 * 26 25 24 46 46 H 1.08002 * 120.03486 * 180.02562 * 27 26 25 47 47 H 1.09001 * 110.40816 * 158.26300 * 28 8 7 48 48 H 1.09003 * 110.40881 * 280.70194 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0525 1.4135 0.0000 4 8 2.7426 1.8024 0.9123 5 8 1.7512 2.2404 -1.0134 6 6 2.0658 -0.7693 -1.2250 7 6 2.8806 -1.9416 -0.6376 8 7 2.3147 -2.1474 0.7205 9 6 3.2650 -2.8610 1.5842 10 6 4.5104 -2.0299 1.7549 11 8 4.6524 -1.0111 1.1124 12 7 5.4665 -2.4189 2.6217 13 6 6.6271 -1.5590 2.8663 14 6 7.7233 -1.9058 1.8920 15 1 7.5706 -2.6881 1.1633 16 6 8.9190 -1.2202 1.9270 17 7 9.1049 -0.2672 2.8142 18 14 10.2750 -1.6447 0.7144 19 1 9.7828 -1.4370 -0.6713 20 1 11.4493 -0.7691 0.9585 21 1 10.6706 -3.0650 0.8915 22 6 5.3505 -3.6439 3.2878 23 6 4.7604 -3.6998 4.5437 24 6 4.6419 -4.9115 5.1960 25 6 5.1206 -6.0663 4.6049 26 6 5.7142 -6.0131 3.3571 27 6 5.8302 -4.8055 2.6970 28 6 2.0662 -0.7722 1.2245 29 1 -0.3634 -1.0277 0.0121 30 1 -0.3633 0.5242 0.8838 31 1 -0.3633 0.5033 -0.8960 32 1 2.1090 3.1377 -0.9692 33 1 2.7082 -0.1251 -1.8254 34 1 1.2388 -1.1465 -1.8265 35 1 3.9360 -1.6766 -0.5735 36 1 2.7490 -2.8377 -1.2441 37 1 3.5250 -3.8158 1.1272 38 1 2.8090 -3.0368 2.5585 39 1 6.9843 -1.7119 3.8846 40 1 6.3405 -0.5157 2.7345 41 1 9.9459 0.2154 2.8385 42 1 4.3907 -2.7976 5.0079 43 1 4.1787 -4.9564 6.1706 44 1 5.0304 -7.0119 5.1188 45 1 6.0868 -6.9168 2.8979 46 1 6.2936 -4.7645 1.7223 47 1 1.3213 -0.7879 2.0201 48 1 2.9941 -0.3242 1.5800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828020124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:37 Heat of formation + Delta-G solvation = -97.905568 kcal Electronic energy + Delta-G solvation = -31807.784871 eV Core-core repulsion = 27634.285403 eV Total energy + Delta-G solvation = -4173.499468 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.20439 -41.32793 -40.00548 -38.72578 -37.15111 -36.50633 -34.88597 -34.50087 -31.80012 -31.12661 -30.79285 -29.58241 -28.09253 -26.66046 -25.12493 -24.36643 -23.60691 -23.40000 -22.42705 -20.79532 -20.42354 -18.89497 -18.76954 -18.59152 -18.01216 -17.33795 -17.18782 -16.84932 -16.66454 -16.23002 -15.96292 -15.61821 -15.49552 -15.41602 -15.11886 -14.57152 -14.50358 -14.26700 -14.20803 -14.09131 -13.60054 -13.42269 -13.31750 -13.09544 -13.05154 -12.74049 -12.66956 -12.52210 -12.47082 -12.45116 -12.41141 -12.19999 -12.08872 -11.96051 -11.75672 -11.56874 -11.46919 -11.31787 -10.71350 -9.81550 -9.79520 -9.59799 -9.27752 -8.28822 -6.43391 0.37260 0.52071 1.16773 1.29687 1.34486 1.41725 1.61015 1.97966 2.17730 2.36028 2.86457 2.99952 3.01388 3.29332 3.54389 3.64960 3.88931 4.08376 4.14861 4.16614 4.27968 4.33246 4.39326 4.42983 4.46718 4.61581 4.65373 4.69754 4.71017 4.74630 4.87462 4.96422 4.97915 4.97969 5.05311 5.09433 5.14412 5.17192 5.29990 5.43669 5.55228 5.56045 5.61448 5.63791 5.68844 5.71543 5.75810 5.97589 6.09150 6.61957 6.71585 6.93847 7.20430 7.35674 8.79092 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.008524 B = 0.004402 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.134093 B = 6358.696895 C = 8547.198945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.051 4.051 3 C 0.485 3.515 4 O -0.551 6.551 5 O -0.505 6.505 6 C -0.096 4.096 7 C 0.011 3.989 8 N -0.467 5.467 9 C 0.040 3.960 10 C 0.472 3.528 11 O -0.561 6.561 12 N -0.565 5.565 13 C 0.271 3.729 14 C -0.535 4.535 15 H 0.053 0.947 16 C 0.007 3.993 17 N -0.930 5.930 18 Si 0.968 3.032 19 H -0.277 1.277 20 H -0.277 1.277 21 H -0.258 1.258 22 C 0.117 3.883 23 C -0.134 4.134 24 C -0.105 4.105 25 C -0.112 4.112 26 C -0.108 4.108 27 C -0.125 4.125 28 C 0.019 3.981 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.423 0.577 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.038 0.962 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.012 0.988 40 H -0.005 1.005 41 H 0.267 0.733 42 H 0.115 0.885 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.150 0.850 46 H 0.106 0.894 47 H 0.093 0.907 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.761 -10.052 -2.939 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.052 4.052 3 C 0.328 3.672 4 O -0.441 6.441 5 O -0.317 6.317 6 C -0.134 4.134 7 C -0.117 4.117 8 N -0.188 5.188 9 C -0.092 4.092 10 C 0.261 3.739 11 O -0.441 6.441 12 N -0.294 5.294 13 C 0.151 3.849 14 C -0.574 4.574 15 H 0.071 0.929 16 C -0.192 4.192 17 N -0.569 5.569 18 Si 0.792 3.208 19 H -0.202 1.202 20 H -0.202 1.202 21 H -0.183 1.183 22 C 0.028 3.972 23 C -0.153 4.153 24 C -0.123 4.123 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.144 4.144 28 C -0.109 4.109 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.284 0.716 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.057 0.943 36 H 0.123 0.877 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.030 0.970 40 H 0.013 0.987 41 H 0.076 0.924 42 H 0.133 0.867 43 H 0.173 0.827 44 H 0.178 0.822 45 H 0.168 0.832 46 H 0.124 0.876 47 H 0.111 0.889 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.025 -9.977 -2.999 21.690 hybrid contribution 2.654 1.955 -0.202 3.303 sum -16.371 -8.021 -3.201 18.509 Atomic orbital electron populations 1.21827 0.87925 1.04841 1.03314 1.21195 0.99893 0.86162 0.97978 1.23782 0.75945 0.89117 0.78355 1.90768 1.37263 1.77605 1.38467 1.84452 1.71944 1.28775 1.46572 1.22343 1.00589 0.95334 0.95150 1.23434 0.98210 0.99680 0.90354 1.65898 1.36256 1.14539 1.02134 1.22392 0.87836 0.97757 1.01220 1.22562 0.85990 0.86635 0.78693 1.90631 1.79652 1.28007 1.45827 1.45898 1.22368 1.18864 1.42254 1.18695 0.82380 0.88546 0.95282 1.21539 0.99186 1.19329 1.17318 0.92866 1.25886 1.01101 0.94515 0.97680 1.70060 1.26442 1.23756 1.36691 0.85463 0.77813 0.78947 0.78589 1.20240 1.20217 1.18284 1.17945 1.00758 0.84881 0.93654 1.21479 1.00373 0.99596 0.93862 1.21351 0.99323 0.91080 1.00563 1.21583 0.97026 0.99530 0.94825 1.21354 0.98724 0.96885 0.95651 1.21462 0.99342 0.92856 1.00780 1.23509 1.01967 0.88970 0.96477 0.88742 0.92149 0.89863 0.71565 0.92009 0.86323 0.94328 0.87687 0.86170 0.86395 0.97004 0.98659 0.92405 0.86683 0.82743 0.82172 0.83205 0.87561 0.88877 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 8.18 71.98 0.59 -1.59 16 2 C -0.05 -1.35 0.97 -52.03 -0.05 -1.40 16 3 C 0.48 15.31 6.75 71.24 0.48 15.79 16 4 O -0.55 -23.27 16.22 21.98 0.36 -22.92 16 5 O -0.50 -11.62 13.33 -51.38 -0.69 -12.30 16 6 C -0.10 -2.38 6.27 31.49 0.20 -2.19 16 7 C 0.01 0.32 6.14 86.45 0.53 0.85 16 8 N -0.47 -13.52 5.65 -886.04 -5.01 -18.52 16 9 C 0.04 1.24 4.88 85.56 0.42 1.66 16 10 C 0.47 20.50 6.66 87.66 0.58 21.09 16 11 O -0.56 -29.23 11.04 -3.03 -0.03 -29.27 16 12 N -0.57 -25.80 2.48 -635.30 -1.58 -27.38 16 13 C 0.27 15.61 5.12 85.63 0.44 16.05 16 14 C -0.54 -32.09 9.39 25.60 0.24 -31.85 16 15 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 16 C 0.01 0.42 5.46 84.66 0.46 0.88 16 17 N -0.93 -58.63 13.29 21.45 0.28 -58.35 16 18 Si 0.97 46.39 29.54 68.60 2.03 48.41 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 22 C 0.12 4.29 3.89 38.15 0.15 4.43 16 23 C -0.13 -4.05 9.83 22.39 0.22 -3.83 16 24 C -0.10 -2.29 10.04 22.25 0.22 -2.07 16 25 C -0.11 -2.17 10.04 22.29 0.22 -1.95 16 26 C -0.11 -2.51 10.04 22.25 0.22 -2.29 16 27 C -0.12 -4.05 9.97 22.39 0.22 -3.82 16 28 C 0.02 0.60 4.97 86.45 0.43 1.03 16 29 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.42 6.62 9.10 -74.06 -0.67 5.95 16 33 H 0.06 1.67 7.69 -2.39 -0.02 1.65 16 34 H 0.12 2.05 7.71 -2.39 -0.02 2.03 16 35 H 0.04 1.52 5.40 -2.39 -0.01 1.50 16 36 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 37 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.12 3.26 7.85 -2.39 -0.02 3.24 16 39 H 0.01 0.72 8.05 -2.39 -0.02 0.70 16 40 H 0.00 -0.31 7.49 -2.39 -0.02 -0.33 16 41 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 42 H 0.12 3.54 8.06 -2.91 -0.02 3.51 16 43 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 44 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 46 H 0.11 3.77 8.06 -2.91 -0.02 3.74 16 47 H 0.09 2.64 7.86 -2.39 -0.02 2.62 16 48 H 0.06 2.64 3.76 -2.39 -0.01 2.63 16 Total: -1.00 -84.67 393.49 1.25 -83.41 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.31 Total: 26.11 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 5.58 Total: 10.79 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -6.30 Total: -104.25 kcal Atomic # 8 Polarization: -64.12 SS G_CDS: -0.36 Total: -64.48 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -84.67 1.25 -83.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828020124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.491 kcal (2) G-P(sol) polarization free energy of solvation -84.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds