Wall clock time and date at job start Sat Apr 11 2020 07:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 110.27646 * 2 1 4 4 O 1.20829 * 120.00266 * 239.30132 * 3 2 1 5 5 O 1.34230 * 120.00231 * 59.29246 * 3 2 1 6 6 C 1.54599 * 110.30914 * 122.19334 * 2 1 3 7 7 C 1.54934 * 102.92250 * 96.96118 * 6 2 1 8 8 N 1.48527 * 103.22893 * 37.41202 * 7 6 2 9 9 C 1.46897 * 111.00144 * 200.27721 * 8 7 6 10 10 C 1.50700 * 109.47543 * 287.39988 * 9 8 7 11 11 O 1.21289 * 119.99798 * 354.62953 * 10 9 8 12 12 N 1.34775 * 120.00236 * 174.63340 * 10 9 8 13 13 C 1.46499 * 119.99978 * 185.11555 * 12 10 9 14 14 C 1.50692 * 109.47612 * 89.99570 * 13 12 10 15 15 H 1.08003 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00449 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99692 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00386 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47258 * 89.99598 * 18 16 14 20 20 H 1.48493 * 109.47138 * 210.00052 * 18 16 14 21 21 H 1.48497 * 109.46887 * 329.99602 * 18 16 14 22 22 C 1.39920 * 120.00029 * 5.10680 * 12 10 9 23 23 C 1.38874 * 120.07070 * 290.78526 * 22 12 10 24 24 C 1.38121 * 119.92542 * 179.79067 * 23 22 12 25 25 C 1.38281 * 120.06929 * 0.48193 * 24 23 22 26 26 C 1.38284 * 120.14368 * 359.75046 * 25 24 23 27 27 C 1.38112 * 120.06991 * 0.02562 * 26 25 24 28 28 C 1.47898 * 105.82126 * 320.79511 * 8 7 6 29 29 H 1.09004 * 109.46916 * 182.09176 * 1 2 3 30 30 H 1.09005 * 109.46831 * 62.09284 * 1 2 3 31 31 H 1.08991 * 109.47521 * 302.09110 * 1 2 3 32 32 H 0.96691 * 117.00352 * 180.02562 * 5 3 2 33 33 H 1.09000 * 110.72334 * 215.32189 * 6 2 1 34 34 H 1.09001 * 110.72052 * 338.60191 * 6 2 1 35 35 H 1.09003 * 110.66517 * 278.97457 * 7 6 2 36 36 H 1.09002 * 110.80916 * 155.92025 * 7 6 2 37 37 H 1.08998 * 109.47104 * 47.39972 * 9 8 7 38 38 H 1.09000 * 109.46969 * 167.39834 * 9 8 7 39 39 H 1.09001 * 109.47031 * 210.00271 * 13 12 10 40 40 H 1.09006 * 109.47035 * 329.99170 * 13 12 10 41 41 H 0.96993 * 120.00148 * 180.02562 * 17 16 14 42 42 H 1.07992 * 120.03710 * 0.02562 * 23 22 12 43 43 H 1.07993 * 119.96066 * 180.23174 * 24 23 22 44 44 H 1.07998 * 119.92875 * 179.76459 * 25 24 23 45 45 H 1.07997 * 119.96331 * 180.02562 * 26 25 24 46 46 H 1.07995 * 120.03407 * 180.02562 * 27 26 25 47 47 H 1.08995 * 109.91556 * 265.97673 * 28 8 7 48 48 H 1.09002 * 109.91597 * 144.67647 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0522 1.4136 0.0000 4 8 2.7627 1.7952 -0.8997 5 8 1.7280 2.2489 0.9994 6 6 2.0666 -0.7725 1.2270 7 6 2.3585 -2.1803 0.6496 8 7 2.8809 -1.8885 -0.7098 9 6 2.7670 -3.0654 -1.5815 10 6 3.7894 -4.0942 -1.1727 11 8 4.6027 -3.8322 -0.3119 12 7 3.8001 -5.3055 -1.7637 13 6 4.7192 -6.3434 -1.2902 14 6 4.0483 -7.1548 -0.2121 15 1 3.0381 -6.9210 0.0900 16 6 4.7241 -8.1956 0.3888 17 7 5.9541 -8.4806 0.0206 18 14 3.8922 -9.2019 1.7247 19 1 3.1784 -10.3490 1.1084 20 1 4.9164 -9.7081 2.6733 21 1 2.9205 -8.3485 2.4545 22 6 2.9333 -5.5717 -2.8293 23 6 1.5660 -5.6686 -2.6066 24 6 0.7126 -5.9272 -3.6614 25 6 1.2194 -6.0994 -4.9364 26 6 2.5809 -6.0082 -5.1607 27 6 3.4391 -5.7453 -4.1110 28 6 2.0645 -0.7673 -1.2235 29 1 -0.3633 -1.0270 0.0375 30 1 -0.3633 0.4810 -0.9082 31 1 -0.3634 0.5459 0.8706 32 1 2.0866 3.1458 0.9558 33 1 2.9805 -0.3126 1.6028 34 1 1.3102 -0.8259 2.0100 35 1 1.4434 -2.7696 0.5917 36 1 3.1095 -2.6961 1.2479 37 1 1.7674 -3.4901 -1.4896 38 1 2.9424 -2.7697 -2.6158 39 1 4.9896 -6.9956 -2.1207 40 1 5.6181 -5.8765 -0.8874 41 1 6.4294 -9.2131 0.4430 42 1 1.1700 -5.5382 -1.6103 43 1 -0.3511 -5.9990 -3.4894 44 1 0.5505 -6.3052 -5.7589 45 1 2.9735 -6.1428 -6.1577 46 1 4.5022 -5.6738 -4.2868 47 1 1.2324 -1.1532 -1.8123 48 1 2.6813 -0.1083 -1.8346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828020130.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:41 Heat of formation + Delta-G solvation = -81.154786 kcal Electronic energy + Delta-G solvation = -31088.704309 eV Core-core repulsion = 26915.931210 eV Total energy + Delta-G solvation = -4172.773099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.02819 -39.96119 -38.74077 -37.78819 -36.31541 -34.83456 -33.64023 -32.67434 -30.74977 -29.96409 -29.40620 -28.21927 -26.79653 -25.67037 -23.79708 -22.85523 -22.45184 -22.09070 -21.21354 -19.93914 -18.98659 -18.08185 -17.15668 -17.05472 -16.52375 -16.14584 -15.97520 -15.69921 -15.12389 -15.01532 -14.62939 -14.47523 -14.20355 -14.02803 -13.97139 -13.41557 -13.18147 -13.05690 -12.87456 -12.77200 -12.46835 -12.27560 -12.21720 -12.13402 -11.77626 -11.73069 -11.47806 -11.36757 -11.23692 -11.18097 -11.03111 -10.86288 -10.82922 -10.64164 -10.49001 -10.19041 -9.73692 -9.27696 -8.73289 -8.60250 -8.45641 -8.24738 -7.67525 -6.07541 -4.12420 1.54522 1.61591 1.99870 2.73921 3.27976 3.29380 3.34875 3.38723 3.56253 3.99668 4.06181 4.18288 4.39496 4.42083 4.60310 4.91179 5.00512 5.10400 5.14555 5.14685 5.17486 5.26879 5.27793 5.33143 5.38134 5.46685 5.51252 5.55765 5.65661 5.66052 5.73094 5.79303 5.90834 5.94798 6.02458 6.15262 6.23243 6.27051 6.57001 6.70101 6.79533 6.83988 6.86936 7.03631 7.18600 7.37866 7.48626 7.67133 7.88078 8.17170 8.36505 8.84620 9.01416 9.52159 11.00782 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.009922 B = 0.003431 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.462126 B = 8157.898176 C = 9793.428792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 C 0.494 3.506 4 O -0.508 6.508 5 O -0.514 6.514 6 C -0.105 4.105 7 C 0.035 3.965 8 N -0.493 5.493 9 C 0.028 3.972 10 C 0.517 3.483 11 O -0.508 6.508 12 N -0.566 5.566 13 C 0.249 3.751 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.893 5.893 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.165 3.835 23 C -0.126 4.126 24 C -0.111 4.111 25 C -0.135 4.135 26 C -0.109 4.109 27 C -0.124 4.124 28 C 0.044 3.956 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.409 0.591 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.049 0.951 41 H 0.264 0.736 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.125 0.875 47 H 0.057 0.943 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.227 15.241 -5.036 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.066 4.066 3 C 0.336 3.664 4 O -0.395 6.395 5 O -0.325 6.325 6 C -0.143 4.143 7 C -0.093 4.093 8 N -0.217 5.217 9 C -0.104 4.104 10 C 0.304 3.696 11 O -0.382 6.382 12 N -0.296 5.296 13 C 0.131 3.869 14 C -0.565 4.565 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.199 1.199 22 C 0.073 3.927 23 C -0.145 4.145 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.128 4.128 27 C -0.144 4.144 28 C -0.084 4.084 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.267 0.733 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.143 0.857 47 H 0.075 0.925 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.969 15.094 -4.703 20.449 hybrid contribution -1.013 -0.487 0.558 1.255 sum -13.983 14.606 -4.146 20.641 Atomic orbital electron populations 1.21904 0.90988 1.03536 1.03073 1.21320 0.97657 0.88294 0.99283 1.23159 0.76999 0.87894 0.78351 1.90711 1.35161 1.76943 1.36658 1.84525 1.71559 1.27528 1.48907 1.22581 1.01751 0.94913 0.95037 1.23376 0.99422 0.95803 0.90649 1.64558 1.50430 1.04765 1.01953 1.22282 0.98282 0.91279 0.98537 1.20102 0.85413 0.81912 0.82181 1.90677 1.38802 1.78088 1.30597 1.45972 1.38745 1.13534 1.31304 1.19407 0.88654 0.83956 0.94833 1.21353 1.00477 1.14533 1.20155 0.92501 1.24909 0.94818 0.97171 0.97033 1.69926 1.10670 1.29967 1.42595 0.86495 0.79171 0.80174 0.81589 1.20620 1.21019 1.19893 1.17752 0.89510 0.97885 0.87595 1.21361 0.92940 1.01063 0.99165 1.20962 0.99277 1.00085 0.92655 1.21054 0.95346 1.01971 0.96927 1.20976 0.93366 0.99881 0.98554 1.21347 1.00423 1.00900 0.91726 1.23078 0.96867 0.93582 0.94878 0.90812 0.91851 0.90882 0.73278 0.90049 0.89528 0.93505 0.87916 0.91737 0.88370 0.94830 0.93280 0.92638 0.86093 0.86225 0.86412 0.86088 0.85746 0.92487 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.15 37.16 0.30 -0.75 16 2 C -0.06 -0.66 0.90 -154.30 -0.14 -0.80 16 3 C 0.49 5.47 6.84 36.00 0.25 5.72 16 4 O -0.51 -7.20 16.00 -18.75 -0.30 -7.50 16 5 O -0.51 -4.14 13.32 -39.26 -0.52 -4.67 16 6 C -0.10 -1.16 6.14 -24.87 -0.15 -1.31 16 7 C 0.03 0.49 5.96 -1.90 -0.01 0.48 16 8 N -0.49 -7.53 4.87 -231.90 -1.13 -8.66 16 9 C 0.03 0.44 3.91 -4.98 -0.02 0.42 16 10 C 0.52 10.80 7.35 -10.99 -0.08 10.72 16 11 O -0.51 -12.61 14.86 5.55 0.08 -12.53 16 12 N -0.57 -12.12 2.50 -114.74 -0.29 -12.41 16 13 C 0.25 6.52 5.15 -5.20 -0.03 6.49 16 14 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 15 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 18 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.16 2.94 4.53 -83.69 -0.38 2.56 16 23 C -0.13 -1.95 8.29 -39.39 -0.33 -2.28 16 24 C -0.11 -1.41 10.04 -39.61 -0.40 -1.81 16 25 C -0.13 -1.61 10.04 -39.55 -0.40 -2.01 16 26 C -0.11 -1.42 10.04 -39.61 -0.40 -1.81 16 27 C -0.12 -1.98 9.73 -39.39 -0.38 -2.36 16 28 C 0.04 0.54 5.93 -2.76 -0.02 0.52 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.41 1.62 9.10 45.56 0.41 2.03 16 33 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 34 H 0.09 0.77 7.85 -51.93 -0.41 0.36 16 35 H 0.05 0.60 7.81 -51.93 -0.41 0.19 16 36 H 0.10 1.75 7.28 -51.93 -0.38 1.37 16 37 H 0.06 0.91 6.05 -51.93 -0.31 0.59 16 38 H 0.10 1.42 8.08 -51.93 -0.42 1.00 16 39 H 0.03 0.90 7.89 -51.93 -0.41 0.49 16 40 H 0.05 1.44 7.36 -51.93 -0.38 1.06 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.12 1.87 7.62 -52.49 -0.40 1.47 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 46 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 47 H 0.06 0.59 7.31 -51.93 -0.38 0.21 16 48 H 0.10 1.43 6.42 -51.93 -0.33 1.09 16 LS Contribution 396.94 15.07 5.98 5.98 Total: -1.00 -35.14 396.94 -9.39 -44.52 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.33 Total: 3.91 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -2.60 Total: 0.36 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.68 Total: -46.76 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.74 Total: -24.70 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.14 -9.39 -44.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828020130.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.633 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds