Wall clock time and date at job start Sat Apr 11 2020 07:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.85384 * 2 1 4 4 C 1.54878 * 110.92984 * 236.28468 * 2 1 3 5 5 N 1.47476 * 104.33804 * 203.53253 * 4 2 1 6 6 C 1.34774 * 125.76817 * 208.92647 * 5 4 2 7 7 O 1.21590 * 120.00318 * 179.97438 * 6 5 4 8 8 N 1.34775 * 120.00091 * 359.97416 * 6 5 4 9 9 C 1.39942 * 120.00468 * 174.73617 * 8 6 5 10 10 C 1.38963 * 120.02938 * 326.16225 * 9 8 6 11 11 C 1.38159 * 120.06263 * 179.72288 * 10 9 8 12 12 C 1.38170 * 120.13871 * 0.54658 * 11 10 9 13 13 C 1.38902 * 120.07169 * 359.72846 * 12 11 10 14 14 O 1.35750 * 120.04000 * 179.97438 * 13 12 11 15 15 C 1.34827 * 117.00352 * 185.93641 * 14 13 12 16 16 H 1.07999 * 119.99942 * 5.39630 * 15 14 13 17 17 C 1.38651 * 120.00058 * 185.40289 * 15 14 13 18 18 N 1.31557 * 120.00168 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99758 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47413 * 89.99907 * 19 17 15 21 21 H 1.48501 * 109.47139 * 209.99662 * 19 17 15 22 22 H 1.48492 * 109.47153 * 329.99724 * 19 17 15 23 23 C 1.38697 * 120.03744 * 146.43135 * 9 8 6 24 24 C 1.49347 * 108.75041 * 28.84819 * 5 4 2 25 25 H 1.09000 * 112.41460 * 229.96432 * 24 5 4 26 26 C 1.54205 * 109.33334 * 104.08662 * 24 5 4 27 27 O 1.43832 * 107.14040 * 242.19860 * 26 24 5 28 28 C 1.44475 * 106.52311 * 29.28431 * 27 26 24 29 29 C 1.54755 * 103.40386 * 318.38982 * 28 27 26 30 30 H 1.09006 * 113.50714 * 273.76020 * 29 28 27 31 31 H 1.09008 * 109.46585 * 296.28845 * 1 2 3 32 32 H 1.08998 * 109.47367 * 56.27815 * 1 2 3 33 33 H 1.08996 * 109.47452 * 176.28709 * 1 2 3 34 34 H 1.09001 * 109.46726 * 183.72058 * 3 2 1 35 35 H 1.09000 * 109.46906 * 303.71558 * 3 2 1 36 36 H 1.08992 * 109.47091 * 63.72140 * 3 2 1 37 37 H 1.09002 * 110.46485 * 322.24823 * 4 2 1 38 38 H 1.09004 * 110.46107 * 84.81829 * 4 2 1 39 39 H 0.96998 * 119.99593 * 354.73158 * 8 6 5 40 40 H 1.07998 * 119.97299 * 359.97438 * 10 9 8 41 41 H 1.08001 * 119.92947 * 180.30105 * 11 10 9 42 42 H 1.08000 * 119.96489 * 179.70677 * 12 11 10 43 43 H 0.96997 * 119.99961 * 180.02562 * 18 17 15 44 44 H 1.07995 * 120.07284 * 0.02610 * 23 9 8 45 45 H 1.08997 * 109.90564 * 1.57545 * 26 24 5 46 46 H 1.09002 * 109.90472 * 122.63985 * 26 24 5 47 47 H 1.09003 * 110.63022 * 199.91489 * 28 27 26 48 48 H 1.09000 * 110.63584 * 76.87160 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0747 1.4298 0.0000 4 6 2.0833 -0.8030 -1.2033 5 7 3.4373 -1.2071 -0.7811 6 6 4.4861 -1.4228 -1.5996 7 8 5.5606 -1.7539 -1.1366 8 7 4.3440 -1.2716 -2.9312 9 6 5.4571 -1.3874 -3.7714 10 6 6.7063 -0.9652 -3.3330 11 6 7.8068 -1.0844 -4.1598 12 6 7.6671 -1.6131 -5.4287 13 6 6.4201 -2.0317 -5.8749 14 8 6.2835 -2.5505 -7.1219 15 6 5.0302 -2.8226 -7.5378 16 1 4.1856 -2.5467 -6.9238 17 6 4.8256 -3.4568 -8.7537 18 7 3.6027 -3.7227 -9.1593 19 14 6.2864 -3.9335 -9.8158 20 1 6.7322 -5.3042 -9.4582 21 1 5.8902 -3.8995 -11.2466 22 1 7.3981 -2.9760 -9.5872 23 6 5.3137 -1.9185 -5.0447 24 6 3.4576 -1.3369 0.7066 25 1 4.2908 -0.7996 1.1594 26 6 3.4365 -2.8307 1.0890 27 8 2.2276 -3.0606 1.8335 28 6 1.2589 -2.1040 1.3498 29 6 2.0829 -0.8024 1.2023 30 1 2.1439 -0.2199 2.1217 31 1 -0.3633 0.4552 0.9215 32 1 -0.3634 0.5705 -0.8547 33 1 -0.3634 -1.0254 -0.0665 34 1 3.1623 1.4042 -0.0667 35 1 1.6709 1.9723 -0.8548 36 1 1.7789 1.9312 0.9214 37 1 1.4653 -1.6807 -1.3923 38 1 2.1333 -0.1728 -2.0913 39 1 3.4701 -1.0826 -3.3073 40 1 6.8179 -0.5471 -2.3434 41 1 8.7775 -0.7601 -3.8150 42 1 8.5284 -1.7007 -6.0744 43 1 3.4596 -4.1667 -10.0098 44 1 4.3430 -2.2429 -5.3895 45 1 3.4400 -3.4444 0.1882 46 1 4.3049 -3.0687 1.7033 47 1 0.4561 -1.9703 2.0750 48 1 0.8587 -2.4167 0.3854 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836291183.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:43 Heat of formation + Delta-G solvation = -74.539632 kcal Electronic energy + Delta-G solvation = -30951.039720 eV Core-core repulsion = 26778.553475 eV Total energy + Delta-G solvation = -4172.486245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.43388 -41.26242 -40.28753 -38.29753 -37.82422 -35.72268 -34.82515 -34.38311 -31.68427 -30.93077 -30.17699 -29.63365 -28.13770 -27.40214 -27.09785 -24.34577 -23.86390 -23.42704 -22.41619 -20.96026 -20.26948 -19.93631 -19.36489 -19.06607 -17.56480 -17.28561 -17.06530 -16.90907 -16.75316 -16.24570 -16.11210 -15.77327 -15.71031 -15.63337 -15.10891 -14.89066 -14.85148 -14.70997 -14.21532 -14.02212 -13.93763 -13.45635 -13.42758 -13.24004 -13.09849 -12.88181 -12.82688 -12.69679 -12.62358 -12.49072 -12.35523 -12.07815 -11.81480 -11.71150 -11.53882 -11.42202 -11.38413 -11.17107 -10.84255 -10.78395 -9.92217 -9.39456 -8.91743 -8.50218 -6.22743 0.39630 0.64088 1.25393 1.33181 1.36684 1.53280 1.92853 2.28716 2.66724 2.77601 2.86826 3.07644 3.11498 3.17266 3.33172 3.66977 3.80281 3.91965 4.04248 4.06686 4.08879 4.27501 4.29462 4.34805 4.40254 4.42225 4.54668 4.63455 4.66327 4.70522 4.74484 4.79792 4.83221 4.87218 4.89351 4.95714 5.03165 5.10847 5.15440 5.33159 5.34990 5.36773 5.44662 5.47052 5.61518 5.73457 5.75700 5.84612 5.91609 6.20757 6.69716 6.84379 7.29826 7.57457 8.61039 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.002611 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.444963 B =10722.980893 C =11404.994924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.055 4.055 3 C -0.135 4.135 4 C 0.091 3.909 5 N -0.625 5.625 6 C 0.720 3.280 7 O -0.603 6.603 8 N -0.675 5.675 9 C 0.201 3.799 10 C -0.191 4.191 11 C -0.050 4.050 12 C -0.203 4.203 13 C 0.143 3.857 14 O -0.239 6.239 15 C -0.398 4.398 16 H 0.082 0.918 17 C 0.013 3.987 18 N -0.921 5.921 19 Si 0.967 3.033 20 H -0.269 1.269 21 H -0.267 1.267 22 H -0.260 1.260 23 C -0.256 4.256 24 C 0.127 3.873 25 H 0.103 0.897 26 C 0.043 3.957 27 O -0.391 6.391 28 C 0.045 3.955 29 C -0.109 4.109 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.413 0.587 40 H 0.129 0.871 41 H 0.160 0.840 42 H 0.135 0.865 43 H 0.284 0.716 44 H 0.118 0.882 45 H 0.040 0.960 46 H 0.093 0.907 47 H 0.122 0.878 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.918 10.795 22.222 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.056 4.056 3 C -0.192 4.192 4 C -0.031 4.031 5 N -0.363 5.363 6 C 0.422 3.578 7 O -0.482 6.482 8 N -0.323 5.323 9 C 0.106 3.894 10 C -0.212 4.212 11 C -0.069 4.069 12 C -0.222 4.222 13 C 0.093 3.907 14 O -0.146 6.146 15 C -0.475 4.475 16 H 0.100 0.900 17 C -0.186 4.186 18 N -0.561 5.561 19 Si 0.790 3.210 20 H -0.194 1.194 21 H -0.192 1.192 22 H -0.184 1.184 23 C -0.278 4.278 24 C 0.024 3.976 25 H 0.121 0.879 26 C -0.035 4.035 27 O -0.310 6.310 28 C -0.031 4.031 29 C -0.128 4.128 30 H 0.152 0.848 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.251 0.749 40 H 0.147 0.853 41 H 0.178 0.822 42 H 0.153 0.847 43 H 0.094 0.906 44 H 0.135 0.865 45 H 0.058 0.942 46 H 0.111 0.889 47 H 0.140 0.860 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.147 10.254 22.388 25.380 hybrid contribution -0.220 -0.459 -1.238 1.338 sum -6.367 9.795 21.151 24.163 Atomic orbital electron populations 1.21838 0.90826 1.03146 1.03878 1.21600 0.97337 0.95063 0.91603 1.21742 1.00146 0.93916 1.03376 1.22835 0.81776 0.99216 0.99237 1.48187 1.09861 1.71716 1.06514 1.15498 0.83528 0.78115 0.80634 1.90917 1.26825 1.54928 1.75557 1.42521 1.10976 1.74121 1.04669 1.17233 0.87590 0.95872 0.88717 1.20906 0.91702 1.07211 1.01372 1.20971 0.99165 0.95470 0.91259 1.20538 0.94960 1.08110 0.98613 1.19315 0.94462 0.92799 0.84125 1.83560 1.30211 1.73554 1.27291 1.20678 0.81349 1.39859 1.05584 0.90029 1.25237 1.00100 0.95504 0.97766 1.69716 1.21423 1.41908 1.23090 0.85259 0.78911 0.79299 0.77555 1.19437 1.19193 1.18410 1.20831 0.99995 1.11170 0.95800 1.23304 1.00571 0.95668 0.78101 0.87900 1.23470 0.88724 0.95297 0.96002 1.88962 1.22541 1.58272 1.61217 1.23986 0.92316 0.85904 1.00902 1.23818 0.91563 0.97340 1.00111 0.84771 0.90062 0.91341 0.91538 0.94143 0.91655 0.90329 0.90464 0.89652 0.74919 0.85327 0.82236 0.84668 0.90590 0.86462 0.94166 0.88887 0.86005 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.16 71.98 0.59 -0.25 16 2 C -0.06 -0.55 0.77 -50.94 -0.04 -0.59 16 3 C -0.13 -1.35 8.64 71.98 0.62 -0.73 16 4 C 0.09 1.41 5.13 86.83 0.45 1.86 16 5 N -0.62 -13.88 2.75 -795.50 -2.19 -16.07 16 6 C 0.72 22.28 8.18 179.06 1.47 23.75 16 7 O -0.60 -22.80 14.39 -4.00 -0.06 -22.86 16 8 N -0.68 -21.32 5.29 -317.24 -1.68 -22.99 16 9 C 0.20 7.71 6.27 38.13 0.24 7.95 16 10 C -0.19 -6.92 8.65 22.43 0.19 -6.73 16 11 C -0.05 -1.69 10.03 22.23 0.22 -1.47 16 12 C -0.20 -7.93 9.99 22.41 0.22 -7.70 16 13 C 0.14 6.74 6.64 22.56 0.15 6.89 16 14 O -0.24 -12.89 8.58 -22.70 -0.19 -13.08 16 15 C -0.40 -23.15 9.90 67.92 0.67 -22.48 16 16 H 0.08 4.92 5.53 -2.91 -0.02 4.91 16 17 C 0.01 0.72 5.49 84.83 0.47 1.19 16 18 N -0.92 -54.18 13.96 21.61 0.30 -53.88 16 19 Si 0.97 45.10 28.62 68.60 1.96 47.06 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 23 C -0.26 -11.41 9.04 22.51 0.20 -11.20 16 24 C 0.13 2.40 3.75 45.74 0.17 2.57 16 25 H 0.10 1.99 8.14 -2.39 -0.02 1.98 16 26 C 0.04 0.96 7.41 72.39 0.54 1.50 16 27 O -0.39 -8.16 11.55 -148.98 -1.72 -9.88 16 28 C 0.04 0.58 5.74 72.58 0.42 0.99 16 29 C -0.11 -1.24 3.46 -8.70 -0.03 -1.27 16 30 H 0.13 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.08 0.28 8.14 -2.38 -0.02 0.26 16 32 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.07 0.40 6.26 -2.39 -0.01 0.38 16 34 H 0.04 0.58 7.98 -2.39 -0.02 0.56 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.08 1.15 6.97 -2.39 -0.02 1.14 16 38 H 0.09 1.25 7.10 -2.39 -0.02 1.23 16 39 H 0.41 10.99 7.27 -92.71 -0.67 10.31 16 40 H 0.13 4.56 6.45 -2.91 -0.02 4.54 16 41 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 42 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 43 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.12 5.58 5.71 -2.91 -0.02 5.56 16 45 H 0.04 1.10 7.89 -2.39 -0.02 1.08 16 46 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.07 0.87 5.47 -2.39 -0.01 0.86 16 Total: -1.00 -72.81 379.89 3.30 -69.51 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.32 Total: 27.92 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 6.55 Total: -5.72 kcal Atomic # 7 Polarization: -89.37 SS G_CDS: -3.56 Total: -92.94 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -1.97 Total: -45.82 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.96 Total: 47.06 kcal Total: -72.81 3.30 -69.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836291183.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.033 kcal (2) G-P(sol) polarization free energy of solvation -72.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds