Wall clock time and date at job start Sat Apr 11 2020 07:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00058 * 2 1 4 4 C 1.53001 * 109.47004 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47176 * 64.99671 * 4 3 2 6 6 C 1.36932 * 120.00123 * 275.70298 * 5 4 3 7 7 H 1.08009 * 119.99643 * 142.57578 * 6 5 4 8 8 C 1.38811 * 120.00463 * 322.57606 * 6 5 4 9 9 N 1.31618 * 120.00072 * 338.68020 * 8 6 5 10 10 Si 1.86793 * 120.00154 * 158.67370 * 8 6 5 11 11 H 1.48500 * 109.47061 * 60.00062 * 10 8 6 12 12 H 1.48495 * 109.47226 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47494 * 300.00488 * 10 8 6 14 14 C 1.46506 * 119.99843 * 95.71157 * 5 4 3 15 15 N 1.46498 * 109.46734 * 269.99854 * 14 5 4 16 16 C 1.33875 * 122.76497 * 90.02940 * 15 14 5 17 17 O 1.21226 * 125.39601 * 359.96738 * 16 15 14 18 18 C 1.51307 * 109.20821 * 179.97438 * 16 15 14 19 19 C 1.54229 * 103.55634 * 359.97438 * 18 16 15 20 20 C 1.53004 * 110.60644 * 241.32822 * 19 18 16 21 21 C 1.50696 * 110.60786 * 118.51741 * 19 18 16 22 22 C 1.38234 * 119.99963 * 295.47373 * 21 19 18 23 23 C 1.38239 * 119.99583 * 179.78676 * 22 21 19 24 24 C 1.38233 * 120.00286 * 0.46173 * 23 22 21 25 25 C 1.38231 * 119.99942 * 359.77105 * 24 23 22 26 26 C 1.38235 * 119.99985 * 115.74563 * 21 19 18 27 27 C 1.33876 * 122.76119 * 269.73289 * 15 14 5 28 28 O 1.21224 * 125.39400 * 359.97438 * 27 15 14 29 29 H 1.08998 * 109.47327 * 300.00194 * 1 2 3 30 30 H 1.09008 * 109.47149 * 59.99868 * 1 2 3 31 31 H 1.08999 * 109.47292 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47345 * 59.99795 * 3 2 1 33 33 H 1.09005 * 109.47049 * 299.99928 * 3 2 1 34 34 H 1.09003 * 109.46672 * 304.99495 * 4 3 2 35 35 H 1.09004 * 109.47024 * 185.00341 * 4 3 2 36 36 H 0.96993 * 120.00122 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.47334 * 149.99518 * 14 5 4 38 38 H 1.09000 * 109.46640 * 29.99820 * 14 5 4 39 39 H 1.09004 * 110.60759 * 118.51557 * 18 16 15 40 40 H 1.08998 * 110.61104 * 241.47733 * 18 16 15 41 41 H 1.09000 * 109.46624 * 59.99812 * 20 19 18 42 42 H 1.08994 * 109.47406 * 179.97438 * 20 19 18 43 43 H 1.09000 * 109.47045 * 300.00317 * 20 19 18 44 44 H 1.07997 * 120.00476 * 359.97438 * 22 21 19 45 45 H 1.08001 * 119.99743 * 180.25029 * 23 22 21 46 46 H 1.08003 * 119.99927 * 179.79078 * 24 23 22 47 47 H 1.08004 * 120.00169 * 179.97438 * 25 24 23 48 48 H 1.08000 * 120.00287 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 3.9850 -0.7996 -1.3748 7 1 3.7096 -1.2597 -2.3124 8 6 4.3485 -1.5908 -0.2938 9 7 5.0685 -1.0805 0.6827 10 14 3.8157 -3.3798 -0.2247 11 1 4.3623 -4.1048 -1.3998 12 1 4.3279 -4.0011 1.0230 13 1 2.3327 -3.4558 -0.2424 14 6 4.4060 1.4031 -2.3741 15 7 3.2521 1.7162 -3.2206 16 6 2.4820 2.7940 -3.0261 17 8 2.6376 3.6197 -2.1523 18 6 1.3866 2.8179 -4.0695 19 6 1.6603 1.5542 -4.9102 20 6 1.9564 1.9282 -6.3640 21 6 0.4927 0.6044 -4.8358 22 6 0.1528 0.0201 -3.6300 23 6 -0.9210 -0.8477 -3.5609 24 6 -1.6491 -1.1385 -4.6995 25 6 -1.3063 -0.5579 -5.9061 26 6 -0.2351 0.3133 -5.9744 27 6 2.8842 0.9513 -4.2559 28 8 3.4425 -0.0641 -4.6118 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8514 0.5682 0.8410 35 1 3.9786 2.1764 0.0890 36 1 5.3222 -1.6333 1.4382 37 1 5.1533 0.8694 -2.9613 38 1 4.8375 2.3280 -1.9912 39 1 0.4057 2.7601 -3.5975 40 1 1.4641 3.7130 -4.6867 41 1 2.8335 2.5741 -6.4015 42 1 2.1472 1.0230 -6.9404 43 1 1.0997 2.4540 -6.7855 44 1 0.7243 0.2438 -2.7414 45 1 -1.1891 -1.3012 -2.6181 46 1 -2.4860 -1.8191 -4.6461 47 1 -1.8748 -0.7854 -6.7958 48 1 0.0329 0.7668 -6.9172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840151729.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:48 Heat of formation + Delta-G solvation = -68.537567 kcal Electronic energy + Delta-G solvation = -33451.390658 eV Core-core repulsion = 29279.164682 eV Total energy + Delta-G solvation = -4172.225975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.09655 -40.19304 -39.40359 -38.88310 -37.27481 -36.88705 -35.35195 -33.23768 -31.93536 -31.22435 -30.40809 -29.17453 -27.46990 -27.15806 -25.87658 -24.79901 -23.74854 -23.19279 -22.54834 -21.64166 -20.24738 -18.82493 -18.56220 -17.98649 -17.63709 -17.09727 -16.92602 -16.77795 -16.53259 -16.05580 -15.84399 -15.79940 -15.67676 -15.47677 -15.17389 -14.97785 -14.75287 -14.67387 -14.27290 -13.95565 -13.65091 -13.48730 -13.29642 -13.26583 -12.94921 -12.82558 -12.77727 -12.73229 -12.61032 -12.45447 -12.16778 -12.02196 -11.92795 -11.77644 -11.65287 -11.52313 -10.87160 -10.82275 -10.53849 -10.42512 -9.80555 -9.65708 -8.78414 -7.89338 -5.49912 0.34866 0.50234 0.62615 1.38851 1.42384 1.49729 1.69218 1.94564 2.49792 2.77838 3.09525 3.18808 3.25571 3.30205 3.48152 3.51504 3.65536 3.90152 4.14689 4.15520 4.22345 4.29642 4.30095 4.40863 4.46471 4.49150 4.56621 4.59008 4.61063 4.62969 4.66999 4.71060 4.72760 4.82645 4.84493 4.90733 4.96997 5.08176 5.14978 5.22267 5.57890 5.62649 5.63698 5.64460 5.71708 6.03938 6.10949 6.34969 6.48258 6.56353 6.91668 7.09342 7.71568 8.21203 9.10074 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010323 B = 0.005594 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.724998 B = 5004.457563 C = 5797.439482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.387 6.387 3 C 0.063 3.937 4 C 0.140 3.860 5 N -0.565 5.565 6 C -0.244 4.244 7 H 0.040 0.960 8 C -0.009 4.009 9 N -0.910 5.910 10 Si 0.944 3.056 11 H -0.284 1.284 12 H -0.288 1.288 13 H -0.284 1.284 14 C 0.334 3.666 15 N -0.581 5.581 16 C 0.522 3.478 17 O -0.516 6.516 18 C -0.138 4.138 19 C -0.050 4.050 20 C -0.130 4.130 21 C -0.080 4.080 22 C -0.129 4.129 23 C -0.131 4.131 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.104 4.104 27 C 0.532 3.468 28 O -0.512 6.512 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.252 0.748 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.160 0.840 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.115 0.885 44 H 0.089 0.911 45 H 0.118 0.882 46 H 0.144 0.856 47 H 0.157 0.843 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.092 8.433 -14.256 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.306 6.306 3 C -0.016 4.016 4 C 0.014 3.986 5 N -0.285 5.285 6 C -0.374 4.374 7 H 0.058 0.942 8 C -0.207 4.207 9 N -0.554 5.554 10 Si 0.774 3.226 11 H -0.211 1.211 12 H -0.213 1.213 13 H -0.210 1.210 14 C 0.126 3.874 15 N -0.328 5.328 16 C 0.313 3.687 17 O -0.391 6.391 18 C -0.177 4.177 19 C -0.053 4.053 20 C -0.187 4.187 21 C -0.080 4.080 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.121 4.121 27 C 0.321 3.679 28 O -0.385 6.385 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.142 0.858 40 H 0.178 0.822 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.133 0.867 44 H 0.108 0.892 45 H 0.136 0.864 46 H 0.162 0.838 47 H 0.174 0.826 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.413 8.051 -13.750 21.486 hybrid contribution 0.080 -1.096 1.073 1.536 sum -14.334 6.954 -12.678 20.360 Atomic orbital electron populations 1.22834 0.81971 1.02388 0.99884 1.88186 1.19210 1.28124 1.95082 1.23112 0.96672 0.83922 0.97898 1.21070 0.89924 0.96091 0.91518 1.44194 1.71923 1.02303 1.10075 1.18721 1.38973 0.81831 0.97860 0.94208 1.25455 0.96679 1.00426 0.98136 1.70028 1.36697 1.37082 1.11552 0.85725 0.78374 0.82021 0.76525 1.21056 1.21340 1.21000 1.21145 0.84730 0.95230 0.86285 1.48613 1.30404 1.24530 1.29223 1.21368 0.83108 0.79310 0.84936 1.90702 1.72418 1.40907 1.35098 1.22839 0.98766 0.99947 0.96146 1.20459 0.90593 0.94260 1.00008 1.21898 1.04467 1.03026 0.89340 1.19313 0.95809 0.98594 0.94333 1.21091 0.97738 0.98433 0.97464 1.21233 0.95787 0.98055 0.99798 1.21489 0.99982 0.99747 0.92492 1.21540 0.97235 0.96353 0.98505 1.21421 0.94887 0.97934 0.97895 1.21222 0.85147 0.82177 0.79358 1.90701 1.58919 1.23150 1.65727 0.93538 0.94196 0.90076 0.94232 0.95073 0.90626 0.92961 0.93868 0.91057 0.89865 0.85837 0.82239 0.90904 0.91270 0.86671 0.89243 0.86372 0.83773 0.82557 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 10.93 113.37 1.24 2.12 16 2 O -0.39 -17.66 9.90 -148.98 -1.48 -19.14 16 3 C 0.06 2.70 6.28 71.98 0.45 3.15 16 4 C 0.14 6.81 5.84 86.38 0.50 7.31 16 5 N -0.57 -28.64 2.67 -713.73 -1.91 -30.54 16 6 C -0.24 -13.94 8.67 84.03 0.73 -13.21 16 7 H 0.04 2.47 7.43 -2.91 -0.02 2.44 16 8 C -0.01 -0.52 5.01 84.86 0.43 -0.09 16 9 N -0.91 -53.95 11.39 21.65 0.25 -53.70 16 10 Si 0.94 48.21 29.60 68.60 2.03 50.25 16 11 H -0.28 -14.41 7.11 99.48 0.71 -13.71 16 12 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 13 H -0.28 -14.49 7.11 99.48 0.71 -13.78 16 14 C 0.33 14.67 6.12 170.96 1.05 15.72 16 15 N -0.58 -21.66 2.79 -767.68 -2.14 -23.81 16 16 C 0.52 16.86 6.64 87.99 0.58 17.45 16 17 O -0.52 -19.06 16.62 -2.86 -0.05 -19.10 16 18 C -0.14 -2.97 6.15 30.46 0.19 -2.79 16 19 C -0.05 -1.21 0.90 -53.06 -0.05 -1.26 16 20 C -0.13 -2.07 7.08 71.98 0.51 -1.56 16 21 C -0.08 -2.05 4.73 -19.87 -0.09 -2.14 16 22 C -0.13 -4.01 8.71 22.27 0.19 -3.82 16 23 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 24 C -0.12 -2.44 10.05 22.27 0.22 -2.22 16 25 C -0.12 -2.06 10.05 22.27 0.22 -1.83 16 26 C -0.10 -1.96 9.05 22.27 0.20 -1.76 16 27 C 0.53 19.31 6.01 87.99 0.53 19.84 16 28 O -0.51 -22.99 16.99 -2.86 -0.05 -23.03 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.24 7.18 -2.38 -0.02 1.23 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 1.31 5.58 -2.38 -0.01 1.29 16 34 H 0.08 4.23 5.48 -2.39 -0.01 4.22 16 35 H 0.05 2.41 7.83 -2.38 -0.02 2.39 16 36 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 37 H 0.07 3.32 7.72 -2.39 -0.02 3.30 16 38 H 0.08 3.44 7.54 -2.39 -0.02 3.43 16 39 H 0.12 2.52 7.55 -2.38 -0.02 2.50 16 40 H 0.16 2.10 7.74 -2.39 -0.02 2.08 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.22 7.75 -2.39 -0.02 1.20 16 43 H 0.11 0.93 7.44 -2.39 -0.02 0.91 16 44 H 0.09 3.44 6.87 -2.91 -0.02 3.42 16 45 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 46 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 47 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 48 H 0.16 1.92 6.05 -2.91 -0.02 1.90 16 Total: -1.00 -75.91 390.76 4.75 -71.15 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.97 Total: 16.33 kcal Atomic # 6 Polarization: 24.47 SS G_CDS: 7.13 Total: 31.60 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -3.81 Total: -108.06 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -1.57 Total: -61.28 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.25 kcal Total: -75.91 4.75 -71.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840151729.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.614 kcal (2) G-P(sol) polarization free energy of solvation -75.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds