Wall clock time and date at job start Sat Apr 11 2020 07:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 110.56655 * 2 1 4 4 C 1.54474 * 110.51360 * 237.31918 * 2 1 3 5 5 O 1.44419 * 104.80756 * 265.33482 * 4 2 1 6 6 C 1.44432 * 105.27448 * 319.48544 * 5 4 2 7 7 H 1.08994 * 110.46750 * 281.63101 * 6 5 4 8 8 C 1.53002 * 110.37143 * 159.34079 * 6 5 4 9 9 N 1.46495 * 109.47149 * 69.62491 * 8 6 5 10 10 C 1.34779 * 120.00241 * 180.02562 * 9 8 6 11 11 O 1.21361 * 119.99748 * 359.97438 * 10 9 8 12 12 C 1.49346 * 120.00379 * 179.72471 * 10 9 8 13 13 O 1.21380 * 119.99897 * 0.26545 * 12 10 9 14 14 N 1.34775 * 120.00270 * 180.27016 * 12 10 9 15 15 C 1.39742 * 120.00119 * 174.88818 * 14 12 10 16 16 C 1.39345 * 119.95541 * 325.53660 * 15 14 12 17 17 C 1.38475 * 120.42473 * 179.76091 * 16 15 14 18 18 C 1.37688 * 120.32486 * 0.51556 * 17 16 15 19 19 C 1.40752 * 119.90097 * 359.74029 * 18 17 16 20 20 C 1.41409 * 120.20875 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99767 * 25.17710 * 20 19 18 22 22 C 1.39930 * 119.99916 * 205.16994 * 20 19 18 23 23 N 1.30835 * 119.99765 * 16.79013 * 22 20 19 24 24 Si 1.86801 * 120.00123 * 196.78129 * 22 20 19 25 25 H 1.48497 * 109.46740 * 60.00554 * 24 22 20 26 26 H 1.48498 * 109.46950 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47353 * 300.00527 * 24 22 20 28 28 C 1.38298 * 119.95348 * 145.80542 * 15 14 12 29 29 C 1.54478 * 104.79927 * 40.51332 * 6 5 4 30 30 H 1.09002 * 109.47467 * 297.31802 * 1 2 3 31 31 H 1.09004 * 109.47188 * 57.32390 * 1 2 3 32 32 H 1.09000 * 109.47074 * 177.31987 * 1 2 3 33 33 H 1.08998 * 109.47472 * 182.67859 * 3 2 1 34 34 H 1.08997 * 109.46881 * 302.68152 * 3 2 1 35 35 H 1.09006 * 109.46856 * 62.67849 * 3 2 1 36 36 H 1.09004 * 110.37025 * 24.16752 * 4 2 1 37 37 H 1.09003 * 110.37610 * 146.38990 * 4 2 1 38 38 H 1.09003 * 109.47448 * 309.61900 * 8 6 5 39 39 H 1.09005 * 109.46591 * 189.62425 * 8 6 5 40 40 H 0.97001 * 119.99973 * 359.97438 * 9 8 6 41 41 H 0.96993 * 119.99772 * 354.89408 * 14 12 10 42 42 H 1.07997 * 119.78548 * 359.97438 * 16 15 14 43 43 H 1.08002 * 119.83341 * 180.25569 * 17 16 15 44 44 H 1.08000 * 120.05116 * 179.76859 * 18 17 16 45 45 H 0.97003 * 119.99514 * 179.97438 * 23 22 20 46 46 H 1.08007 * 120.16245 * 359.96605 * 28 15 14 47 47 H 1.08996 * 110.51733 * 94.66436 * 29 6 5 48 48 H 1.08999 * 110.50942 * 217.24037 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0675 1.4325 0.0000 4 6 2.0713 -0.7812 -1.2177 5 8 2.3070 -2.1177 -0.7238 6 6 2.8758 -1.9422 0.5921 7 1 3.9305 -1.6770 0.5192 8 6 2.7042 -3.2168 1.4209 9 7 3.5666 -4.2705 0.8804 10 6 3.5811 -5.4899 1.4543 11 8 2.8801 -5.7149 2.4191 12 6 4.4557 -6.5659 0.8996 13 8 5.1571 -6.3409 -0.0652 14 7 4.4662 -7.7869 1.4701 15 6 5.2014 -8.8235 0.8890 16 6 5.3160 -8.9028 -0.4975 17 6 6.0463 -9.9230 -1.0835 18 6 6.6589 -10.8770 -0.3021 19 6 6.5477 -10.8130 1.0995 20 6 7.1737 -11.7896 1.9082 21 1 8.0370 -12.3236 1.5393 22 6 6.6747 -12.0641 3.1864 23 7 5.4676 -11.6800 3.5138 24 14 7.7320 -12.9789 4.4253 25 1 8.9733 -12.2057 4.6831 26 1 6.9779 -13.1430 5.6940 27 1 8.0850 -14.3156 3.8833 28 6 5.8097 -9.7723 1.6904 29 6 2.0714 -0.7814 1.2181 30 1 -0.3634 0.4716 0.9130 31 1 -0.3634 0.5548 -0.8650 32 1 -0.3633 -1.0265 -0.0481 33 1 3.1562 1.4122 -0.0480 34 1 1.6755 1.9676 -0.8650 35 1 1.7534 1.9384 0.9131 36 1 1.3311 -0.7974 -2.0177 37 1 3.0013 -0.3360 -1.5713 38 1 1.6643 -3.5408 1.3781 39 1 2.9801 -3.0168 2.4563 40 1 4.1266 -4.0908 0.1091 41 1 3.9633 -7.9462 2.2841 42 1 4.8351 -8.1619 -1.1189 43 1 6.1323 -9.9730 -2.1589 44 1 7.2243 -11.6728 -0.7640 45 1 5.1216 -11.8706 4.3998 46 1 5.7184 -9.7141 2.7651 47 1 1.2490 -1.1676 1.8203 48 1 2.7214 -0.1485 1.8222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874299586.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:03 Heat of formation + Delta-G solvation = -104.044085 kcal Electronic energy + Delta-G solvation = -29294.680609 eV Core-core repulsion = 25120.914955 eV Total energy + Delta-G solvation = -4173.765654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.70465 -40.21167 -38.63514 -37.12190 -35.61149 -34.77551 -34.17645 -33.27194 -31.22537 -29.59675 -28.72078 -27.85972 -27.04793 -26.16030 -25.28043 -23.96851 -21.86522 -21.30520 -20.83287 -19.86548 -19.65074 -18.36007 -17.50654 -16.93704 -16.31403 -16.07396 -15.98609 -15.73659 -15.35767 -15.00151 -14.78519 -14.67446 -14.47209 -14.06604 -13.94096 -13.79770 -13.52108 -13.09550 -13.01590 -12.81735 -12.61684 -12.36430 -12.32487 -12.02608 -11.83602 -11.66704 -11.54802 -11.30727 -11.20702 -11.16373 -11.12161 -11.06049 -10.74811 -10.60445 -10.10440 -10.01931 -9.77523 -9.47733 -9.33075 -9.18509 -8.97281 -7.41697 -7.07780 -6.71976 -4.38835 1.57609 2.51088 2.78737 2.91914 3.07042 3.09717 3.22690 3.39724 3.59245 3.89558 3.93051 3.95027 4.20334 4.33080 4.49129 4.61772 4.66616 4.71855 4.80162 4.87091 5.07251 5.14154 5.15461 5.24127 5.29839 5.32488 5.42419 5.47172 5.58310 5.63909 5.65635 5.67367 5.81109 6.12290 6.22599 6.41255 6.56528 6.60819 6.77085 6.95355 7.03499 7.12732 7.23808 7.51280 7.58608 7.81694 7.90051 7.99942 8.09555 8.26000 8.41815 8.63276 8.86592 8.91483 10.18144 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.023825 B = 0.001843 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.963143 B =15187.507530 C =15949.606302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 C -0.139 4.139 4 C 0.052 3.948 5 O -0.363 6.363 6 C 0.062 3.938 7 H 0.079 0.921 8 C 0.126 3.874 9 N -0.700 5.700 10 C 0.511 3.489 11 O -0.522 6.522 12 C 0.498 3.502 13 O -0.508 6.508 14 N -0.629 5.629 15 C 0.138 3.862 16 C -0.227 4.227 17 C -0.085 4.085 18 C -0.225 4.225 19 C 0.120 3.880 20 C -0.463 4.463 21 H 0.079 0.921 22 C 0.076 3.924 23 N -0.797 5.797 24 Si 0.909 3.091 25 H -0.264 1.264 26 H -0.279 1.279 27 H -0.265 1.265 28 C -0.175 4.175 29 C -0.139 4.139 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.416 0.584 41 H 0.414 0.586 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.281 0.719 46 H 0.125 0.875 47 H 0.083 0.917 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 23.573 -2.633 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.196 4.196 4 C -0.025 4.025 5 O -0.282 6.282 6 C 0.004 3.996 7 H 0.097 0.903 8 C 0.002 3.998 9 N -0.355 5.355 10 C 0.292 3.708 11 O -0.398 6.398 12 C 0.279 3.721 13 O -0.383 6.383 14 N -0.273 5.273 15 C 0.047 3.953 16 C -0.248 4.248 17 C -0.104 4.104 18 C -0.245 4.245 19 C 0.117 3.883 20 C -0.492 4.492 21 H 0.097 0.903 22 C -0.142 4.142 23 N -0.422 5.422 24 Si 0.734 3.266 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.190 1.190 28 C -0.197 4.197 29 C -0.178 4.178 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.253 0.747 41 H 0.251 0.749 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.092 0.908 46 H 0.142 0.858 47 H 0.101 0.899 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.521 23.374 -2.527 25.006 hybrid contribution 0.367 -0.172 0.753 0.855 sum -8.154 23.201 -1.774 24.656 Atomic orbital electron populations 1.21851 0.93178 1.02452 1.01985 1.21954 0.96934 0.96055 0.95103 1.21852 1.00942 0.94517 1.02300 1.23572 1.00202 0.82588 0.96116 1.89222 1.82902 1.25892 1.30206 1.23255 0.98015 0.94410 0.83949 0.90311 1.21531 0.95967 0.85262 0.97030 1.45640 1.44886 1.10645 1.34288 1.20317 0.83117 0.83653 0.83717 1.90754 1.41613 1.81245 1.26185 1.19926 0.83609 0.83699 0.84914 1.90768 1.40433 1.80965 1.26150 1.43185 1.47547 1.08332 1.28272 1.17617 0.96680 0.88677 0.92351 1.20284 1.09599 1.02592 0.92281 1.20411 0.97743 0.94768 0.97430 1.21064 1.08299 1.01227 0.93885 1.17360 0.89486 0.90501 0.90955 1.19510 1.12822 1.18475 0.98420 0.90277 1.25899 0.94437 0.94899 0.98918 1.69799 1.13956 1.37386 1.21074 0.86354 0.80763 0.80335 0.79190 1.18860 1.20376 1.19008 1.21112 1.03680 0.95698 0.99176 1.23061 1.00535 0.96311 0.97848 0.92301 0.92377 0.91931 0.92275 0.92223 0.92112 0.88913 0.91981 0.90044 0.89531 0.74748 0.74907 0.88050 0.88837 0.88700 0.90806 0.85760 0.89855 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 8.29 37.16 0.31 -0.44 16 2 C -0.10 -0.57 1.05 -152.94 -0.16 -0.73 16 3 C -0.14 -0.60 8.32 37.16 0.31 -0.30 16 4 C 0.05 0.36 6.73 37.93 0.26 0.62 16 5 O -0.36 -3.59 11.34 -35.23 -0.40 -3.99 16 6 C 0.06 0.49 3.32 -25.95 -0.09 0.41 16 7 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 8 C 0.13 1.25 5.28 -4.04 -0.02 1.23 16 9 N -0.70 -8.92 5.55 -60.76 -0.34 -9.25 16 10 C 0.51 8.25 7.89 -11.63 -0.09 8.15 16 11 O -0.52 -9.23 16.48 5.49 0.09 -9.14 16 12 C 0.50 9.46 7.61 -11.63 -0.09 9.37 16 13 O -0.51 -10.55 14.22 5.47 0.08 -10.47 16 14 N -0.63 -12.85 5.32 -10.34 -0.05 -12.91 16 15 C 0.14 3.30 6.24 -83.82 -0.52 2.78 16 16 C -0.23 -5.39 8.66 -39.08 -0.34 -5.73 16 17 C -0.08 -1.97 10.01 -39.69 -0.40 -2.37 16 18 C -0.22 -5.56 9.79 -38.83 -0.38 -5.94 16 19 C 0.12 3.19 5.57 -106.85 -0.59 2.60 16 20 C -0.46 -12.15 9.05 -37.74 -0.34 -12.49 16 21 H 0.08 1.99 7.90 -52.48 -0.41 1.58 16 22 C 0.08 1.88 5.16 -17.34 -0.09 1.80 16 23 N -0.80 -20.24 10.94 55.55 0.61 -19.63 16 24 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 25 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 28 C -0.18 -4.52 8.60 -38.67 -0.33 -4.85 16 29 C -0.14 -0.83 5.92 -25.16 -0.15 -0.98 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.25 8.08 -51.93 -0.42 -0.17 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.09 0.59 7.87 -51.93 -0.41 0.18 16 37 H 0.06 0.38 7.83 -51.93 -0.41 -0.02 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.42 5.07 7.94 -40.82 -0.32 4.75 16 41 H 0.41 7.86 8.29 -40.82 -0.34 7.52 16 42 H 0.10 2.35 6.48 -52.49 -0.34 2.01 16 43 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 44 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 45 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 46 H 0.12 3.26 6.17 -52.48 -0.32 2.94 16 47 H 0.08 0.49 7.46 -51.93 -0.39 0.11 16 48 H 0.08 0.40 7.74 -51.93 -0.40 0.00 16 LS Contribution 397.57 15.07 5.99 5.99 Total: -1.00 -30.31 397.57 -8.91 -39.21 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -7.13 Total: 13.53 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.72 Total: -6.88 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.22 Total: -41.79 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.23 Total: -23.60 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.31 -8.91 -39.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874299586.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.833 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds