Wall clock time and date at job start Sat Apr 11 2020 07:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46985 * 2 1 4 4 C 1.53001 * 109.47234 * 240.00118 * 2 1 3 5 5 C 1.52994 * 109.47235 * 119.99947 * 2 1 3 6 6 N 1.46494 * 109.47366 * 66.07620 * 5 2 1 7 7 C 1.46506 * 119.99891 * 83.56747 * 6 5 2 8 8 C 1.50698 * 109.47077 * 90.00217 * 7 6 5 9 9 H 1.07996 * 120.00130 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99883 * 179.72470 * 8 7 6 11 11 N 1.31523 * 119.99901 * 0.27598 * 10 8 7 12 12 Si 1.86794 * 120.00059 * 180.27628 * 10 8 7 13 13 H 1.48503 * 109.47308 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47301 * 120.00036 * 12 10 8 15 15 H 1.48502 * 109.47081 * 240.00006 * 12 10 8 16 16 C 1.34777 * 120.00420 * 263.57208 * 6 5 2 17 17 O 1.21284 * 120.00225 * 183.97747 * 16 6 5 18 18 C 1.50702 * 119.99885 * 3.96739 * 16 6 5 19 19 C 1.53001 * 109.47394 * 186.01441 * 18 16 6 20 20 C 1.52999 * 108.57751 * 64.30163 * 19 18 16 21 21 C 1.53194 * 108.64439 * 182.30028 * 19 18 16 22 22 C 1.55566 * 106.23706 * 148.66148 * 21 19 18 23 23 S 1.83897 * 99.63977 * 323.01073 * 22 21 19 24 24 O 1.42100 * 111.46277 * 144.08889 * 23 22 21 25 25 O 1.42095 * 111.46360 * 283.93652 * 23 22 21 26 26 N 1.46449 * 108.64520 * 306.30955 * 19 18 16 27 27 H 1.08995 * 109.47175 * 296.08851 * 1 2 3 28 28 H 1.09000 * 109.47082 * 56.09107 * 1 2 3 29 29 H 1.09003 * 109.46949 * 176.08891 * 1 2 3 30 30 H 1.08998 * 109.47300 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.46836 * 300.00347 * 3 2 1 32 32 H 1.09001 * 109.47073 * 59.99709 * 3 2 1 33 33 H 1.09001 * 109.47194 * 299.99976 * 4 2 1 34 34 H 1.08998 * 109.47006 * 59.99922 * 4 2 1 35 35 H 1.08998 * 109.47169 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.47215 * 306.07455 * 5 2 1 37 37 H 1.09005 * 109.47555 * 186.07814 * 5 2 1 38 38 H 1.08995 * 109.47110 * 330.00170 * 7 6 5 39 39 H 1.09006 * 109.47081 * 210.00279 * 7 6 5 40 40 H 0.96998 * 120.00067 * 180.02562 * 11 10 8 41 41 H 1.08999 * 109.47338 * 306.01997 * 18 16 6 42 42 H 1.09005 * 109.46551 * 66.01877 * 18 16 6 43 43 H 1.09004 * 109.46881 * 60.70366 * 20 19 18 44 44 H 1.08997 * 109.46942 * 180.69780 * 20 19 18 45 45 H 1.09003 * 109.47398 * 300.70364 * 20 19 18 46 46 H 1.09002 * 110.09899 * 267.85160 * 21 19 18 47 47 H 1.08996 * 110.10704 * 29.46666 * 21 19 18 48 48 H 1.09000 * 111.36510 * 80.61427 * 22 21 19 49 49 H 1.08997 * 111.36994 * 205.35225 * 22 21 19 50 50 H 0.96992 * 126.09118 * 57.13607 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.6748 -2.1381 1.1784 7 6 2.5159 -3.0749 0.4291 8 6 3.5651 -3.6508 1.3448 9 1 3.6015 -3.3496 2.3813 10 6 4.4748 -4.5669 0.8608 11 7 4.4301 -4.9341 -0.4013 12 14 5.7705 -5.2867 1.9976 13 1 5.6076 -4.7151 3.3586 14 1 5.6112 -6.7618 2.0586 15 1 7.1223 -4.9557 1.4797 16 6 0.5649 -2.5800 1.8025 17 8 0.3011 -3.7638 1.8048 18 6 -0.3481 -1.6032 2.4976 19 6 -1.4407 -2.3698 3.2456 20 6 -0.7837 -3.2038 4.3474 21 6 -2.3901 -1.3590 3.8966 22 6 -3.7933 -2.0303 3.9159 23 16 -3.7344 -2.9137 2.3041 24 8 -4.4013 -4.1666 2.3731 25 8 -3.9247 -2.0213 1.2148 26 7 -2.1044 -3.2756 2.3056 27 1 -0.3633 0.4519 0.9229 28 1 -0.3633 0.5733 -0.8529 29 1 -0.3633 -1.0253 -0.0701 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 1.5906 -0.2740 2.1358 37 1 3.1246 -0.6280 1.3053 38 1 3.0006 -2.5496 -0.3938 39 1 1.8981 -3.8805 0.0323 40 1 5.0698 -5.5790 -0.7417 41 1 0.2281 -1.0080 3.2059 42 1 -0.8066 -0.9456 1.7589 43 1 -0.2655 -2.5434 5.0428 44 1 -1.5489 -3.7663 4.8823 45 1 -0.0688 -3.8956 3.9020 46 1 -2.0650 -1.1411 4.9139 47 1 -2.4217 -0.4420 3.3083 48 1 -3.8883 -2.7280 4.7480 49 1 -4.5895 -1.2861 3.9330 50 1 -1.6743 -3.9653 1.7764 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932059317.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:18 Heat of formation + Delta-G solvation = -99.329037 kcal Electronic energy + Delta-G solvation = -31489.084056 eV Core-core repulsion = 27450.966814 eV Total energy + Delta-G solvation = -4038.117242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17701 -38.22370 -37.03021 -36.70618 -35.82136 -33.87613 -32.44119 -31.77798 -30.72026 -28.70543 -27.44129 -26.83046 -26.66185 -25.45138 -24.43771 -22.59771 -20.51588 -19.47321 -19.33212 -18.02632 -17.39292 -16.69008 -16.51103 -16.21499 -15.82814 -15.50984 -15.30011 -14.74721 -14.54915 -14.35471 -13.89232 -13.76703 -13.57800 -13.36676 -13.15931 -13.06636 -12.68887 -12.45727 -12.40881 -12.11958 -12.06580 -11.95274 -11.94439 -11.70079 -11.49759 -11.38819 -11.35882 -11.27101 -11.02629 -10.92898 -10.83550 -10.69240 -10.61909 -10.57840 -10.39212 -10.17610 -10.11210 -9.53266 -9.25485 -8.83399 -8.42560 -7.63080 -6.05085 -4.08955 0.26682 2.67825 3.27865 3.34537 3.37048 3.40858 3.57468 3.82473 3.87384 4.17137 4.36829 4.44694 4.59207 4.87816 4.98930 4.99491 5.04494 5.07834 5.22760 5.26490 5.29249 5.37777 5.42353 5.50065 5.63720 5.68179 5.70921 5.71639 5.80752 5.92775 5.94753 6.01941 6.13562 6.15059 6.19701 6.25484 6.30647 6.43208 6.58537 6.59568 6.77387 7.09685 7.39539 7.47863 7.63456 7.91474 8.24084 8.42107 8.90022 9.08857 9.55826 11.02709 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.004162 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.905318 B = 6726.581603 C = 8090.548333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.143 4.143 5 C 0.119 3.881 6 N -0.589 5.589 7 C 0.238 3.762 8 C -0.522 4.522 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.894 5.894 12 Si 0.895 3.105 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.285 1.285 16 C 0.514 3.486 17 O -0.538 6.538 18 C -0.167 4.167 19 C 0.159 3.841 20 C -0.164 4.164 21 C -0.117 4.117 22 C -0.595 4.595 23 S 2.563 3.437 24 O -0.967 6.967 25 O -0.958 6.958 26 N -1.072 6.072 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.040 0.960 40 H 0.262 0.738 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.096 0.904 48 H 0.140 0.860 49 H 0.137 0.863 50 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.071 13.958 8.030 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.201 4.201 5 C -0.005 4.005 6 N -0.319 5.319 7 C 0.119 3.881 8 C -0.561 4.561 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.211 1.211 16 C 0.301 3.699 17 O -0.417 6.417 18 C -0.208 4.208 19 C 0.068 3.932 20 C -0.222 4.222 21 C -0.156 4.156 22 C -0.725 4.725 23 S 2.657 3.343 24 O -0.956 6.956 25 O -0.947 6.947 26 N -0.846 5.846 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.128 0.872 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.129 0.871 47 H 0.114 0.886 48 H 0.158 0.842 49 H 0.155 0.845 50 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -12.832 12.994 7.179 19.623 hybrid contribution 1.430 -0.384 0.987 1.779 sum -11.403 12.609 8.166 18.860 Atomic orbital electron populations 1.22122 0.94951 1.02154 1.01083 1.21009 0.95596 0.95259 0.96971 1.21805 1.01161 0.95186 1.01323 1.22059 1.01259 1.01300 0.95436 1.21575 1.01149 0.81749 0.96066 1.48166 1.24352 1.08407 1.51006 1.19529 0.89104 0.87992 0.91495 1.21465 1.13487 1.24603 0.96590 0.92608 1.24911 0.97771 0.96270 0.95114 1.69936 1.36882 1.32996 1.13541 0.86491 0.81211 0.79089 0.80865 1.19927 1.20982 1.21077 1.20062 0.81505 0.88842 0.79468 1.90481 1.73265 1.17335 1.60634 1.22689 0.97328 0.99408 1.01385 1.20236 0.93133 0.89689 0.90174 1.22405 1.01805 1.00943 0.97065 1.22523 0.90191 0.98167 1.04707 1.30775 1.04546 1.14123 1.23096 1.06498 0.74670 0.75630 0.77548 1.93597 1.74184 1.40785 1.87032 1.93640 1.85192 1.67270 1.48614 1.55193 1.25421 1.48149 1.55828 0.92648 0.92821 0.92028 0.92474 0.92773 0.92930 0.90988 0.93752 0.92257 0.91507 0.90190 0.93590 0.94199 0.92845 0.88766 0.87188 0.92256 0.92561 0.89149 0.87072 0.88556 0.84204 0.84509 0.70424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 6.64 37.16 0.25 -1.57 16 2 C -0.09 -1.14 0.85 -154.51 -0.13 -1.27 16 3 C -0.14 -1.44 8.47 37.16 0.31 -1.13 16 4 C -0.14 -2.21 6.96 37.16 0.26 -1.95 16 5 C 0.12 1.77 4.58 -4.05 -0.02 1.75 16 6 N -0.59 -11.22 2.00 -175.06 -0.35 -11.57 16 7 C 0.24 5.78 3.85 -5.19 -0.02 5.76 16 8 C -0.52 -14.15 9.39 -34.44 -0.32 -14.47 16 9 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 12 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 16 C 0.51 9.37 6.10 -10.98 -0.07 9.31 16 17 O -0.54 -11.67 11.49 5.55 0.06 -11.60 16 18 C -0.17 -2.11 3.12 -27.88 -0.09 -2.20 16 19 C 0.16 1.84 0.83 -131.75 -0.11 1.73 16 20 C -0.16 -1.99 8.24 37.16 0.31 -1.68 16 21 C -0.12 -0.87 5.56 -25.27 -0.14 -1.01 16 22 C -0.60 -4.29 7.66 38.52 0.29 -4.00 16 23 S 2.56 31.73 6.46 -107.50 -0.69 31.03 16 24 O -0.97 -15.42 18.14 -57.40 -1.04 -16.46 16 25 O -0.96 -14.53 18.14 -57.40 -1.04 -15.57 16 26 N -1.07 -14.91 5.61 0.59 0.00 -14.91 16 27 H 0.05 0.57 6.66 -51.93 -0.35 0.22 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.91 6.39 -51.93 -0.33 0.58 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.32 5.73 -51.93 -0.30 1.02 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.96 7.69 -51.93 -0.40 0.56 16 36 H 0.07 0.80 6.06 -51.93 -0.31 0.49 16 37 H 0.08 1.27 8.12 -51.93 -0.42 0.85 16 38 H 0.05 1.13 5.24 -51.93 -0.27 0.86 16 39 H 0.04 1.12 7.48 -51.93 -0.39 0.73 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.09 0.97 6.95 -51.93 -0.36 0.61 16 42 H 0.11 1.29 3.97 -51.93 -0.21 1.08 16 43 H 0.06 0.59 8.04 -51.93 -0.42 0.18 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.47 6.02 -51.93 -0.31 1.16 16 46 H 0.11 0.58 7.71 -51.93 -0.40 0.18 16 47 H 0.10 0.59 7.77 -51.93 -0.40 0.19 16 48 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.45 7.32 6.58 -40.18 -0.26 7.06 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -35.55 385.35 -9.17 -44.73 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -8.06 Total: 6.42 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 0.43 Total: -9.13 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.39 Total: -51.69 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -2.02 Total: -43.63 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 31.73 SS G_CDS: -0.69 Total: 31.03 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.55 -9.17 -44.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932059317.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.602 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds