Wall clock time and date at job start Sat Apr 11 2020 07:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46985 * 2 1 4 4 C 1.53001 * 109.47234 * 240.00118 * 2 1 3 5 5 C 1.52994 * 109.47235 * 119.99947 * 2 1 3 6 6 N 1.46494 * 109.47366 * 66.07620 * 5 2 1 7 7 C 1.46506 * 119.99891 * 83.56747 * 6 5 2 8 8 C 1.50698 * 109.47077 * 90.00217 * 7 6 5 9 9 H 1.07996 * 120.00130 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99883 * 179.72470 * 8 7 6 11 11 N 1.31523 * 119.99901 * 0.27598 * 10 8 7 12 12 Si 1.86794 * 120.00059 * 180.27628 * 10 8 7 13 13 H 1.48503 * 109.47308 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47301 * 120.00036 * 12 10 8 15 15 H 1.48502 * 109.47081 * 240.00006 * 12 10 8 16 16 C 1.34777 * 120.00420 * 263.57208 * 6 5 2 17 17 O 1.21284 * 120.00225 * 183.97747 * 16 6 5 18 18 C 1.50702 * 119.99885 * 3.96739 * 16 6 5 19 19 C 1.53001 * 109.47394 * 186.01441 * 18 16 6 20 20 C 1.52999 * 108.57751 * 64.30163 * 19 18 16 21 21 C 1.53194 * 108.64439 * 182.30028 * 19 18 16 22 22 C 1.55566 * 106.23706 * 148.66148 * 21 19 18 23 23 S 1.83897 * 99.63977 * 323.01073 * 22 21 19 24 24 O 1.42100 * 111.46277 * 144.08889 * 23 22 21 25 25 O 1.42095 * 111.46360 * 283.93652 * 23 22 21 26 26 N 1.46449 * 108.64520 * 306.30955 * 19 18 16 27 27 H 1.08995 * 109.47175 * 296.08851 * 1 2 3 28 28 H 1.09000 * 109.47082 * 56.09107 * 1 2 3 29 29 H 1.09003 * 109.46949 * 176.08891 * 1 2 3 30 30 H 1.08998 * 109.47300 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.46836 * 300.00347 * 3 2 1 32 32 H 1.09001 * 109.47073 * 59.99709 * 3 2 1 33 33 H 1.09001 * 109.47194 * 299.99976 * 4 2 1 34 34 H 1.08998 * 109.47006 * 59.99922 * 4 2 1 35 35 H 1.08998 * 109.47169 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.47215 * 306.07455 * 5 2 1 37 37 H 1.09005 * 109.47555 * 186.07814 * 5 2 1 38 38 H 1.08995 * 109.47110 * 330.00170 * 7 6 5 39 39 H 1.09006 * 109.47081 * 210.00279 * 7 6 5 40 40 H 0.96998 * 120.00067 * 180.02562 * 11 10 8 41 41 H 1.08999 * 109.47338 * 306.01997 * 18 16 6 42 42 H 1.09005 * 109.46551 * 66.01877 * 18 16 6 43 43 H 1.09004 * 109.46881 * 60.70366 * 20 19 18 44 44 H 1.08997 * 109.46942 * 180.69780 * 20 19 18 45 45 H 1.09003 * 109.47398 * 300.70364 * 20 19 18 46 46 H 1.09002 * 110.09899 * 267.85160 * 21 19 18 47 47 H 1.08996 * 110.10704 * 29.46666 * 21 19 18 48 48 H 1.09000 * 111.36510 * 80.61427 * 22 21 19 49 49 H 1.08997 * 111.36994 * 205.35225 * 22 21 19 50 50 H 0.96992 * 126.09118 * 57.13607 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.6748 -2.1381 1.1784 7 6 2.5159 -3.0749 0.4291 8 6 3.5651 -3.6508 1.3448 9 1 3.6015 -3.3496 2.3813 10 6 4.4748 -4.5669 0.8608 11 7 4.4301 -4.9341 -0.4013 12 14 5.7705 -5.2867 1.9976 13 1 5.6076 -4.7151 3.3586 14 1 5.6112 -6.7618 2.0586 15 1 7.1223 -4.9557 1.4797 16 6 0.5649 -2.5800 1.8025 17 8 0.3011 -3.7638 1.8048 18 6 -0.3481 -1.6032 2.4976 19 6 -1.4407 -2.3698 3.2456 20 6 -0.7837 -3.2038 4.3474 21 6 -2.3901 -1.3590 3.8966 22 6 -3.7933 -2.0303 3.9159 23 16 -3.7344 -2.9137 2.3041 24 8 -4.4013 -4.1666 2.3731 25 8 -3.9247 -2.0213 1.2148 26 7 -2.1044 -3.2756 2.3056 27 1 -0.3633 0.4519 0.9229 28 1 -0.3633 0.5733 -0.8529 29 1 -0.3633 -1.0253 -0.0701 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 1.5906 -0.2740 2.1358 37 1 3.1246 -0.6280 1.3053 38 1 3.0006 -2.5496 -0.3938 39 1 1.8981 -3.8805 0.0323 40 1 5.0698 -5.5790 -0.7417 41 1 0.2281 -1.0080 3.2059 42 1 -0.8066 -0.9456 1.7589 43 1 -0.2655 -2.5434 5.0428 44 1 -1.5489 -3.7663 4.8823 45 1 -0.0688 -3.8956 3.9020 46 1 -2.0650 -1.1411 4.9139 47 1 -2.4217 -0.4420 3.3083 48 1 -3.8883 -2.7280 4.7480 49 1 -4.5895 -1.2861 3.9330 50 1 -1.6743 -3.9653 1.7764 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932059317.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:17 Heat of formation + Delta-G solvation = -126.917318 kcal Electronic energy + Delta-G solvation = -31490.280374 eV Core-core repulsion = 27450.966814 eV Total energy + Delta-G solvation = -4039.313560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.42419 -39.27309 -38.14221 -37.87200 -36.86053 -35.56248 -34.27288 -32.55097 -31.87421 -30.03541 -28.73704 -28.07771 -27.69533 -26.81808 -25.40883 -24.23480 -21.44464 -20.59848 -20.41778 -19.26535 -18.65153 -18.40536 -17.55326 -17.39759 -17.08795 -16.75425 -16.62269 -16.17963 -15.79306 -15.34964 -15.00859 -14.99925 -14.67421 -14.49924 -14.24447 -14.07189 -13.94988 -13.60247 -13.45072 -13.39723 -13.16494 -13.13320 -13.02088 -12.95832 -12.82455 -12.73124 -12.56692 -12.56104 -12.45519 -12.16504 -12.13365 -11.98982 -11.83955 -11.68676 -11.61481 -11.43342 -11.36244 -11.31760 -10.59404 -10.29967 -10.22741 -9.24579 -8.18469 -6.32135 -0.60138 1.34649 1.37266 1.48232 1.76247 1.99828 2.34010 2.52259 2.77117 3.10742 3.12401 3.41639 3.59171 3.75946 3.91053 3.93408 3.96854 4.07563 4.19263 4.33831 4.45791 4.59026 4.63485 4.66702 4.73469 4.75908 4.82853 4.85132 4.91959 4.95543 4.98582 5.01655 5.07160 5.12178 5.16083 5.19916 5.25324 5.29525 5.36758 5.42424 5.50736 5.57503 5.61894 5.67061 5.94618 6.14075 6.32592 6.77161 6.95655 7.34306 7.66389 8.87506 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.004162 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.905318 B = 6726.581603 C = 8090.548333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.141 4.141 5 C 0.114 3.886 6 N -0.597 5.597 7 C 0.259 3.741 8 C -0.532 4.532 9 H 0.052 0.948 10 C 0.006 3.994 11 N -0.931 5.931 12 Si 0.963 3.037 13 H -0.265 1.265 14 H -0.287 1.287 15 H -0.272 1.272 16 C 0.501 3.499 17 O -0.584 6.584 18 C -0.157 4.157 19 C 0.148 3.852 20 C -0.163 4.163 21 C -0.113 4.113 22 C -0.545 4.545 23 S 2.541 3.459 24 O -1.018 7.018 25 O -0.998 6.998 26 N -1.090 6.090 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.030 0.970 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.037 0.963 39 H -0.014 1.014 40 H 0.264 0.736 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.037 0.963 46 H 0.153 0.847 47 H 0.121 0.879 48 H 0.163 0.837 49 H 0.179 0.821 50 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.882 18.111 11.860 25.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 C -0.188 4.188 4 C -0.198 4.198 5 C -0.009 4.009 6 N -0.326 5.326 7 C 0.137 3.863 8 C -0.571 4.571 9 H 0.070 0.930 10 C -0.192 4.192 11 N -0.571 5.571 12 Si 0.788 3.212 13 H -0.189 1.189 14 H -0.213 1.213 15 H -0.198 1.198 16 C 0.291 3.709 17 O -0.465 6.465 18 C -0.198 4.198 19 C 0.058 3.942 20 C -0.222 4.222 21 C -0.152 4.152 22 C -0.681 4.681 23 S 2.642 3.358 24 O -1.008 7.008 25 O -0.987 6.987 26 N -0.859 5.859 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.004 0.996 40 H 0.072 0.928 41 H 0.150 0.850 42 H 0.142 0.858 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.171 0.829 47 H 0.139 0.861 48 H 0.181 0.819 49 H 0.196 0.804 50 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -13.658 17.182 10.983 24.543 hybrid contribution 1.671 -1.694 -0.204 2.388 sum -11.987 15.487 10.779 22.355 Atomic orbital electron populations 1.22107 0.93972 1.00597 1.03369 1.20982 0.96288 0.96569 0.94419 1.21751 1.00911 0.92857 1.03234 1.21997 1.00124 0.99570 0.98125 1.21880 1.00833 0.79426 0.98768 1.48122 1.24298 1.09500 1.50693 1.18882 0.88250 0.87652 0.91493 1.21785 1.13983 1.24716 0.96619 0.92956 1.25807 1.00112 0.96743 0.96581 1.70070 1.37932 1.33734 1.15390 0.85441 0.78799 0.77802 0.79171 1.18917 1.21279 1.19751 1.21189 0.81444 0.89446 0.78806 1.90478 1.74162 1.19914 1.61962 1.22763 0.96768 0.98252 1.02015 1.20643 0.94060 0.90089 0.89427 1.22386 1.01332 1.00857 0.97584 1.22730 0.88397 0.97175 1.06921 1.30570 1.06220 1.14079 1.17216 1.06950 0.73717 0.75190 0.79976 1.93526 1.74859 1.43905 1.88507 1.93580 1.85315 1.67254 1.52538 1.55303 1.26307 1.48115 1.56195 0.89200 0.91849 0.95331 0.92930 0.91832 0.90043 0.95089 0.92191 0.93895 0.87264 0.91657 0.94476 0.99620 0.92755 0.84983 0.85762 0.89337 0.91256 0.94333 0.82900 0.86072 0.81879 0.80362 0.72608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 6.64 71.98 0.48 -2.77 16 2 C -0.08 -2.02 0.85 -52.18 -0.04 -2.07 16 3 C -0.13 -2.29 8.47 71.98 0.61 -1.68 16 4 C -0.14 -4.56 6.96 71.98 0.50 -4.06 16 5 C 0.11 3.24 4.58 86.38 0.40 3.63 16 6 N -0.60 -23.58 2.00 -826.16 -1.65 -25.23 16 7 C 0.26 13.60 3.85 85.63 0.33 13.93 16 8 C -0.53 -30.22 9.39 25.60 0.24 -29.98 16 9 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 10 C 0.01 0.34 5.46 84.65 0.46 0.80 16 11 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 12 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 14 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 16 C 0.50 18.80 6.10 87.66 0.53 19.34 16 17 O -0.58 -27.35 11.49 -3.04 -0.03 -27.38 16 18 C -0.16 -3.57 3.12 29.85 0.09 -3.47 16 19 C 0.15 3.04 0.83 3.68 0.00 3.04 16 20 C -0.16 -3.61 8.24 71.98 0.59 -3.02 16 21 C -0.11 -0.96 5.56 31.54 0.18 -0.79 16 22 C -0.55 -4.86 7.66 72.87 0.56 -4.30 16 23 S 2.54 61.68 6.46 -56.49 -0.37 61.32 16 24 O -1.02 -33.87 18.14 -127.79 -2.32 -36.19 16 25 O -1.00 -30.30 18.14 -127.79 -2.32 -32.62 16 26 N -1.09 -30.94 5.61 -152.04 -0.85 -31.80 16 27 H 0.09 1.39 6.66 -2.39 -0.02 1.38 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.03 0.83 6.39 -2.39 -0.02 0.82 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.03 1.23 5.73 -2.39 -0.01 1.22 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.48 7.69 -2.39 -0.02 1.46 16 36 H 0.11 2.15 6.06 -2.39 -0.01 2.14 16 37 H 0.06 2.05 8.12 -2.38 -0.02 2.03 16 38 H 0.04 1.99 5.24 -2.39 -0.01 1.98 16 39 H -0.01 -0.89 7.48 -2.38 -0.02 -0.91 16 40 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.13 1.98 6.95 -2.39 -0.02 1.96 16 42 H 0.12 2.49 3.97 -2.38 -0.01 2.48 16 43 H 0.09 1.39 8.04 -2.39 -0.02 1.37 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.04 1.27 6.02 -2.39 -0.01 1.26 16 46 H 0.15 0.25 7.71 -2.39 -0.02 0.24 16 47 H 0.12 0.57 7.77 -2.39 -0.02 0.55 16 48 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.18 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.43 15.55 6.58 -93.12 -0.61 14.93 16 Total: -1.00 -89.46 385.35 0.03 -89.43 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.34 Total: 23.23 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 4.93 Total: -11.40 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -2.22 Total: -113.59 kcal Atomic # 8 Polarization: -91.52 SS G_CDS: -4.67 Total: -96.19 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 61.68 SS G_CDS: -0.37 Total: 61.32 kcal Total: -89.46 0.03 -89.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932059317.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.486 kcal (2) G-P(sol) polarization free energy of solvation -89.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds