Wall clock time and date at job start Sat Apr 11 2020 07:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.47204 * 109.50801 * 2 1 4 4 N 2.60800 * 109.50760 * 0.02562 * 2 1 3 5 5 C 1.53096 * 109.50395 * 120.12802 * 2 1 3 6 6 N 1.47016 * 109.26203 * 176.78384 * 5 2 1 7 7 C 1.46894 * 111.00417 * 177.60908 * 6 5 2 8 8 C 1.53001 * 109.47248 * 288.01246 * 7 6 5 9 9 H 1.08996 * 109.46953 * 55.56619 * 8 7 6 10 10 O 1.42902 * 109.46987 * 295.56852 * 8 7 6 11 11 C 1.52993 * 109.47110 * 175.56491 * 8 7 6 12 12 O 1.42905 * 109.47259 * 184.99884 * 11 8 7 13 13 C 1.35671 * 117.00285 * 180.02562 * 12 11 8 14 14 C 1.39315 * 119.81957 * 359.72831 * 13 12 11 15 15 C 1.36427 * 120.18845 * 180.27428 * 14 13 12 16 16 C 1.40830 * 119.81321 * 0.02562 * 15 14 13 17 17 C 1.41214 * 120.18518 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99482 * 29.22475 * 17 16 15 19 19 C 1.39894 * 120.00564 * 209.22991 * 17 16 15 20 20 N 1.30880 * 119.99425 * 10.22104 * 19 17 16 21 21 Si 1.86797 * 120.00315 * 190.22678 * 19 17 16 22 22 H 1.48502 * 109.47269 * 59.99593 * 21 19 17 23 23 H 1.48496 * 109.47347 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47102 * 299.99858 * 21 19 17 25 25 C 1.40836 * 119.64056 * 359.97438 * 16 15 14 26 26 C 1.36439 * 119.81049 * 0.02562 * 25 16 15 27 27 C 1.47017 * 110.74776 * 301.38644 * 6 5 2 28 28 C 1.53100 * 109.25920 * 58.61316 * 27 6 5 29 29 O 1.43009 * 109.25715 * 303.15000 * 28 27 6 30 30 H 1.08998 * 109.47423 * 180.08712 * 1 2 3 31 31 H 1.09002 * 109.47116 * 300.09105 * 1 2 3 32 32 H 1.09005 * 109.46531 * 60.08510 * 1 2 3 33 33 H 1.09002 * 109.50645 * 56.84573 * 5 2 1 34 34 H 1.09007 * 109.50845 * 296.71844 * 5 2 1 35 35 H 1.08995 * 109.47082 * 168.01001 * 7 6 5 36 36 H 1.09007 * 109.47111 * 48.00969 * 7 6 5 37 37 H 0.96698 * 113.99735 * 299.99772 * 10 8 7 38 38 H 1.09001 * 109.47115 * 65.00420 * 11 8 7 39 39 H 1.09001 * 109.47579 * 304.99812 * 11 8 7 40 40 H 1.08007 * 119.90213 * 0.26974 * 14 13 12 41 41 H 1.07999 * 120.09797 * 180.02562 * 15 14 13 42 42 H 0.96997 * 119.99636 * 180.02562 * 20 19 17 43 43 H 1.08004 * 120.09677 * 179.97438 * 25 16 15 44 44 H 1.08001 * 119.90364 * 180.02562 * 26 25 16 45 45 H 1.09004 * 109.50267 * 178.54397 * 27 6 5 46 46 H 1.09001 * 109.50649 * 298.63181 * 27 6 5 47 47 H 1.09003 * 109.50481 * 63.08349 * 28 27 6 48 48 H 1.08997 * 109.50733 * 183.21338 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0216 1.3875 0.0000 4 7 2.4009 2.4583 0.0011 5 6 2.0411 -0.7243 1.2482 6 7 3.5092 -0.7889 1.2043 7 6 4.0445 -1.4278 2.4139 8 6 3.8878 -0.4788 3.6038 9 1 2.8418 -0.1886 3.7018 10 8 4.6877 0.6863 3.3924 11 6 4.3431 -1.1848 4.8825 12 8 4.0886 -0.3422 6.0083 13 6 4.4370 -0.8224 7.2284 14 6 5.0095 -2.0879 7.3373 15 6 5.3575 -2.5804 8.5610 16 6 5.1362 -1.8061 9.7162 17 6 5.4930 -2.3084 10.9869 18 1 6.3134 -3.0045 11.0814 19 6 4.7838 -1.9046 12.1231 20 7 3.6727 -1.2252 11.9938 21 14 5.4228 -2.3350 13.8248 22 1 6.7704 -1.7400 14.0127 23 1 4.4964 -1.7957 14.8525 24 1 5.5099 -3.8111 13.9621 25 6 4.5571 -0.5278 9.5975 26 6 4.2147 -0.0499 8.3662 27 6 3.9639 -1.4885 -0.0062 28 6 3.4334 -0.7564 -1.2418 29 8 2.0076 -0.6759 -1.1663 30 1 -0.3634 -1.0276 0.0016 31 1 -0.3633 0.5153 0.8892 32 1 -0.3632 0.5125 -0.8908 33 1 1.6330 -1.7347 1.2754 34 1 1.7272 -0.1802 2.1390 35 1 5.1002 -1.6558 2.2676 36 1 3.4974 -2.3500 2.6102 37 1 5.6322 0.5028 3.2962 38 1 5.4107 -1.3958 4.8207 39 1 3.7939 -2.1194 4.9968 40 1 5.1781 -2.6806 6.4503 41 1 5.8016 -3.5615 8.6436 42 1 3.1812 -0.9449 12.7816 43 1 4.3836 0.0722 10.4787 44 1 3.7709 0.9303 8.2734 45 1 5.0535 -1.5021 -0.0310 46 1 3.5872 -2.5113 0.0014 47 1 3.8534 0.2488 -1.2775 48 1 3.7201 -1.3034 -2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933597054.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:20 Heat of formation + Delta-G solvation = -94.473196 kcal Electronic energy + Delta-G solvation = -29650.883647 eV Core-core repulsion = 25477.533018 eV Total energy + Delta-G solvation = -4173.350629 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.37056 -40.60890 -38.97841 -37.82501 -37.24648 -36.30025 -35.13858 -34.08712 -32.19876 -31.45097 -30.85907 -29.45639 -27.90385 -26.67951 -25.50073 -24.58826 -23.28747 -22.59138 -22.22961 -22.08164 -19.24134 -18.98192 -18.70611 -17.77277 -17.73636 -17.05669 -17.02572 -16.78440 -16.28853 -16.13594 -15.74195 -15.56828 -15.35332 -15.08572 -14.95894 -14.84376 -14.52922 -14.08911 -14.04774 -13.89787 -13.82775 -13.57214 -13.41933 -13.22616 -13.09265 -13.02114 -12.81580 -12.78247 -12.64335 -12.63865 -12.39841 -12.32772 -11.85216 -11.74774 -11.64316 -11.57847 -11.27402 -11.06646 -10.92018 -10.79693 -9.56255 -9.37310 -8.85516 -8.53896 -6.25129 0.95257 1.02967 1.40183 1.50429 1.51582 1.53434 1.70800 2.23899 2.28746 2.66636 2.73695 2.76852 2.89598 3.51788 3.55110 3.69232 3.77185 3.88381 3.99737 4.02087 4.05405 4.23513 4.27932 4.28517 4.36373 4.42865 4.47512 4.53080 4.60057 4.67799 4.69195 4.81756 4.86064 4.86720 4.93279 5.00837 5.07567 5.21771 5.23351 5.30035 5.59011 5.65167 5.80295 5.86325 5.87443 5.96341 6.07065 6.27264 6.45831 6.57660 6.81061 6.88137 6.97182 7.10283 8.42578 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.026803 B = 0.001784 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.426111 B =15692.075583 C =15978.776534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.222 3.778 3 C 0.212 3.788 4 N -0.464 5.464 5 C 0.028 3.972 6 N -0.551 5.551 7 C 0.039 3.961 8 C 0.122 3.878 9 H 0.091 0.909 10 O -0.564 6.564 11 C 0.029 3.971 12 O -0.333 6.333 13 C 0.009 3.991 14 C -0.167 4.167 15 C -0.200 4.200 16 C 0.051 3.949 17 C -0.499 4.499 18 H 0.076 0.924 19 C 0.028 3.972 20 N -0.842 5.842 21 Si 0.985 3.015 22 H -0.262 1.262 23 H -0.271 1.271 24 H -0.259 1.259 25 C -0.144 4.144 26 C -0.141 4.141 27 C 0.021 3.979 28 C 0.053 3.947 29 O -0.360 6.360 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.382 0.618 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.133 0.867 41 H 0.109 0.891 42 H 0.285 0.715 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.066 0.934 47 H 0.039 0.961 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.613 -5.566 -24.533 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.179 3.821 3 C -0.107 4.107 4 N -0.142 5.142 5 C -0.101 4.101 6 N -0.276 5.276 7 C -0.088 4.088 8 C 0.062 3.938 9 H 0.109 0.891 10 O -0.370 6.370 11 C -0.047 4.047 12 O -0.249 6.249 13 C -0.035 4.035 14 C -0.186 4.186 15 C -0.220 4.220 16 C 0.049 3.951 17 C -0.530 4.530 18 H 0.094 0.906 19 C -0.184 4.184 20 N -0.470 5.470 21 Si 0.806 3.194 22 H -0.186 1.186 23 H -0.196 1.196 24 H -0.184 1.184 25 C -0.164 4.164 26 C -0.160 4.160 27 C -0.107 4.107 28 C -0.023 4.023 29 O -0.277 6.277 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.230 0.770 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.151 0.849 41 H 0.127 0.873 42 H 0.095 0.905 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.831 -3.007 -24.598 25.075 hybrid contribution 0.615 -1.270 1.224 1.868 sum -3.215 -4.277 -23.374 23.979 Atomic orbital electron populations 1.21901 0.86830 1.06329 1.04599 1.19318 0.96978 0.78329 0.87523 1.30287 0.92313 0.95720 0.92372 1.81163 1.09599 1.14857 1.08610 1.22931 0.88474 1.01704 0.97036 1.61979 1.08707 1.54216 1.02675 1.22616 1.02613 0.95197 0.88414 1.21846 0.96042 0.86017 0.89900 0.89142 1.86642 1.22830 1.32717 1.94807 1.23526 1.01436 0.94320 0.85421 1.85894 1.80908 1.45177 1.12915 1.18708 1.05602 0.94905 0.84264 1.20711 1.04359 0.95281 0.98207 1.20884 1.08768 0.99656 0.92647 1.17969 0.92100 0.91312 0.93726 1.19676 1.15807 1.25561 0.91917 0.90562 1.26736 0.93588 0.93004 1.05116 1.69863 1.12980 1.30833 1.33332 0.85212 0.78955 0.79598 0.75657 1.18607 1.19577 1.18365 1.20947 1.03774 0.96377 0.95283 1.20028 1.05057 0.99591 0.91286 1.22865 1.02325 0.96704 0.88784 1.22975 0.79553 1.00294 0.99511 1.88167 1.22676 1.75317 1.41549 0.87343 0.89109 0.90437 0.89063 0.89233 0.88043 0.91051 0.76957 0.91367 0.90924 0.84888 0.87324 0.90478 0.87295 0.87854 0.88058 0.91607 0.94248 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.81 71.98 0.63 -0.52 16 2 C 0.22 3.08 1.05 -12.57 -0.01 3.07 16 3 C 0.21 4.68 12.50 89.44 1.12 5.80 16 4 N -0.46 -13.40 18.54 20.01 0.37 -13.03 16 5 C 0.03 0.35 4.14 86.31 0.36 0.71 16 6 N -0.55 -7.79 4.28 -895.19 -3.83 -11.62 16 7 C 0.04 0.52 4.61 86.30 0.40 0.92 16 8 C 0.12 2.61 3.29 30.59 0.10 2.71 16 9 H 0.09 2.16 6.57 -2.39 -0.02 2.14 16 10 O -0.56 -14.79 13.24 -144.35 -1.91 -16.70 16 11 C 0.03 0.76 4.37 71.98 0.31 1.07 16 12 O -0.33 -12.89 10.09 -85.25 -0.86 -13.75 16 13 C 0.01 0.41 6.71 22.79 0.15 0.56 16 14 C -0.17 -7.02 8.96 22.11 0.20 -6.83 16 15 C -0.20 -9.55 9.74 22.48 0.22 -9.33 16 16 C 0.05 2.77 5.55 -21.28 -0.12 2.65 16 17 C -0.50 -26.98 9.05 23.40 0.21 -26.77 16 18 H 0.08 3.92 7.87 -2.91 -0.02 3.90 16 19 C 0.03 1.42 5.26 85.24 0.45 1.87 16 20 N -0.84 -45.07 10.84 21.82 0.24 -44.84 16 21 Si 0.98 38.77 29.57 68.60 2.03 40.80 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 24 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 25 C -0.14 -7.81 8.60 22.49 0.19 -7.62 16 26 C -0.14 -6.97 9.92 22.11 0.22 -6.75 16 27 C 0.02 0.20 5.62 86.31 0.49 0.68 16 28 C 0.05 0.59 6.70 72.02 0.48 1.08 16 29 O -0.36 -4.87 10.26 -148.98 -1.53 -6.40 16 30 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 1.32 6.55 -2.38 -0.02 1.31 16 35 H 0.10 1.03 7.93 -2.39 -0.02 1.01 16 36 H 0.07 0.72 8.05 -2.38 -0.02 0.70 16 37 H 0.38 7.37 9.05 -74.06 -0.67 6.70 16 38 H 0.07 1.59 7.65 -2.39 -0.02 1.57 16 39 H 0.07 1.69 7.64 -2.39 -0.02 1.67 16 40 H 0.13 4.42 6.27 -2.91 -0.02 4.41 16 41 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 42 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 43 H 0.11 6.18 6.23 -2.91 -0.02 6.17 16 44 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 45 H 0.10 0.77 8.04 -2.39 -0.02 0.75 16 46 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.04 0.63 7.23 -2.39 -0.02 0.61 16 48 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -73.14 395.35 0.22 -72.92 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.32 Total: 29.34 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 5.40 Total: -36.72 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -3.22 Total: -69.49 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -4.30 Total: -36.85 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -73.14 0.22 -72.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933597054.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.554 kcal (2) G-P(sol) polarization free energy of solvation -73.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds