Wall clock time and date at job start Sat Apr 11 2020 07:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30871 * 126.20189 * 2 1 4 4 C 1.34577 * 107.28346 * 180.15658 * 3 2 1 5 5 C 1.47836 * 126.01818 * 179.83429 * 4 3 2 6 6 O 1.21557 * 119.99874 * 179.69330 * 5 4 3 7 7 N 1.34773 * 120.00154 * 359.69775 * 5 4 3 8 8 C 1.46497 * 120.00126 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47269 * 179.97438 * 8 7 5 10 10 H 1.08999 * 110.64418 * 305.70436 * 9 8 7 11 11 C 1.55153 * 110.72131 * 182.55676 * 9 8 7 12 12 C 1.54908 * 101.58264 * 206.13657 * 11 9 8 13 13 N 1.47422 * 104.83520 * 37.00820 * 12 11 9 14 14 C 1.36931 * 125.65120 * 155.90119 * 13 12 11 15 15 H 1.08003 * 120.00373 * 342.05519 * 14 13 12 16 16 C 1.38817 * 120.00368 * 162.05722 * 14 13 12 17 17 N 1.31618 * 120.00257 * 156.24102 * 16 14 13 18 18 Si 1.86794 * 119.99605 * 336.24746 * 16 14 13 19 19 H 1.48497 * 109.47474 * 84.66961 * 18 16 14 20 20 H 1.48500 * 109.47079 * 204.66716 * 18 16 14 21 21 H 1.48499 * 109.47398 * 324.66604 * 18 16 14 22 22 C 1.47318 * 108.73377 * 335.71885 * 13 12 11 23 23 N 1.31558 * 107.95735 * 359.57492 * 4 3 2 24 24 N 1.28851 * 108.70770 * 0.26183 * 23 4 3 25 25 C 1.40104 * 125.77265 * 180.02562 * 24 23 4 26 26 N 1.33626 * 125.59848 * 179.66216 * 25 24 23 27 27 C 1.30804 * 109.79178 * 179.85949 * 26 25 24 28 28 N 1.34440 * 108.19561 * 0.40612 * 27 26 25 29 29 H 0.96996 * 126.77376 * 179.78799 * 28 27 26 30 30 N 1.31152 * 125.59459 * 359.97438 * 25 24 23 31 31 H 1.09001 * 109.46753 * 270.31210 * 1 2 3 32 32 H 1.08997 * 109.47039 * 30.31278 * 1 2 3 33 33 H 1.09001 * 109.47155 * 150.31174 * 1 2 3 34 34 H 0.97010 * 120.00069 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.47237 * 59.99649 * 8 7 5 36 36 H 1.08993 * 109.47267 * 299.99445 * 8 7 5 37 37 H 1.09001 * 111.00694 * 324.20899 * 11 9 8 38 38 H 1.09006 * 111.00389 * 88.02806 * 11 9 8 39 39 H 1.09003 * 110.36844 * 155.85054 * 12 11 9 40 40 H 1.09006 * 110.36672 * 278.06244 * 12 11 9 41 41 H 0.96996 * 119.99965 * 179.97438 * 17 16 14 42 42 H 1.08998 * 110.06431 * 241.86943 * 22 13 12 43 43 H 1.09000 * 109.85276 * 120.60635 * 22 13 12 44 44 H 1.08000 * 125.90426 * 180.16312 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2800 1.0560 0.0000 4 6 3.5531 0.6197 -0.0035 5 6 4.7631 1.4690 -0.0083 6 8 5.8654 0.9565 -0.0055 7 7 4.6442 2.8115 -0.0156 8 6 5.8433 3.6531 -0.0197 9 6 5.4321 5.1267 -0.0284 10 1 4.7559 5.3321 -0.8583 11 6 6.6810 6.0448 -0.0977 12 6 6.1533 7.3387 0.5709 13 7 5.2665 6.8706 1.6515 14 6 4.9426 7.5756 2.7798 15 1 5.5491 8.4156 3.0845 16 6 3.8346 7.2105 3.5322 17 7 3.7679 7.5353 4.8059 18 14 2.4382 6.2582 2.7368 19 1 2.7568 4.8079 2.7512 20 1 1.1827 6.4967 3.4931 21 1 2.2649 6.7130 1.3338 22 6 4.7827 5.5204 1.3151 23 7 3.5310 -0.6956 0.0037 24 7 2.3039 -1.0884 0.0059 25 6 1.8703 -2.4207 0.0137 26 7 0.5965 -2.8241 0.0224 27 6 0.5458 -4.1311 0.0250 28 7 1.8058 -4.6001 0.0270 29 1 2.0790 -5.5308 0.0320 30 7 2.6483 -3.4766 0.0196 31 1 -0.3633 0.0056 1.0277 32 1 -0.3633 0.8871 -0.5187 33 1 -0.3633 -0.8928 -0.5090 34 1 3.7646 3.2205 -0.0181 35 1 6.4362 3.4364 -0.9083 36 1 6.4355 3.4461 0.8716 37 1 7.5092 5.6213 0.4704 38 1 6.9731 6.2297 -1.1315 39 1 6.9802 7.9174 0.9825 40 1 5.5940 7.9366 -0.1488 41 1 2.9935 7.2805 5.3315 42 1 3.6974 5.5264 1.2145 43 1 5.0813 4.8160 2.0915 44 1 -0.3528 -4.7301 0.0292 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028724329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:08 Heat of formation + Delta-G solvation = 200.702624 kcal Electronic energy + Delta-G solvation = -29566.287821 eV Core-core repulsion = 25366.782135 eV Total energy + Delta-G solvation = -4199.505686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.08062 -42.87618 -39.56847 -37.91019 -35.30341 -34.73641 -33.80438 -32.66251 -32.49337 -31.56583 -30.40906 -28.73387 -28.43873 -26.53967 -25.03569 -23.79699 -23.45674 -22.74294 -21.02000 -20.64612 -20.20969 -19.93027 -19.32530 -18.07911 -17.57470 -17.28108 -16.80982 -16.23289 -15.98629 -15.75598 -15.66077 -14.88687 -14.64040 -14.31201 -13.81611 -13.45366 -13.42146 -13.31246 -13.22680 -12.77804 -12.75283 -12.41493 -12.32426 -11.98602 -11.81000 -11.51110 -11.24800 -10.98963 -10.93848 -10.90486 -10.82420 -10.69240 -10.50233 -10.34235 -10.21739 -10.13414 -9.80753 -9.62639 -9.27795 -8.99185 -8.56049 -7.00686 -5.89412 -3.17549 0.34172 0.95244 1.10260 1.69768 2.02175 2.28053 2.87941 3.25618 3.36475 3.42578 3.52861 3.56359 3.63121 3.94612 4.19166 4.52579 4.61075 4.82445 4.87718 5.08614 5.10751 5.12945 5.22643 5.28516 5.30500 5.49005 5.52203 5.66529 5.69075 5.83861 5.87740 5.92719 6.08439 6.11711 6.13635 6.24644 6.32689 6.38655 6.51831 6.65294 6.80727 6.84384 6.95040 7.39775 7.73472 7.76780 8.12519 8.36688 8.89044 9.75039 10.24079 11.27059 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.002558 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.028877 B =10943.370392 C =12172.860367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.262 3.738 3 N -0.471 5.471 4 C 0.169 3.831 5 C 0.615 3.385 6 O -0.515 6.515 7 N -0.702 5.702 8 C 0.133 3.867 9 C -0.116 4.116 10 H 0.083 0.917 11 C -0.121 4.121 12 C 0.133 3.867 13 N -0.610 5.610 14 C -0.242 4.242 15 H 0.093 0.907 16 C 0.020 3.980 17 N -0.908 5.908 18 Si 0.886 3.114 19 H -0.284 1.284 20 H -0.305 1.305 21 H -0.279 1.279 22 C 0.123 3.877 23 N -0.236 5.236 24 N -0.234 5.234 25 C 0.454 3.546 26 N -0.536 5.536 27 C 0.295 3.705 28 N -0.467 5.467 29 H 0.454 0.546 30 N -0.269 5.269 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.412 0.588 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.025 0.975 41 H 0.262 0.738 42 H 0.026 0.974 43 H 0.043 0.957 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.555 -25.999 -14.234 31.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.014 4.014 3 N -0.197 5.197 4 C -0.113 4.113 5 C 0.396 3.604 6 O -0.388 6.388 7 N -0.354 5.354 8 C 0.010 3.990 9 C -0.136 4.136 10 H 0.101 0.899 11 C -0.159 4.159 12 C 0.007 3.993 13 N -0.337 5.337 14 C -0.369 4.369 15 H 0.110 0.890 16 C -0.179 4.179 17 N -0.552 5.552 18 Si 0.718 3.282 19 H -0.211 1.211 20 H -0.233 1.233 21 H -0.206 1.206 22 C -0.002 4.002 23 N -0.071 5.071 24 N -0.027 5.027 25 C 0.084 3.916 26 N -0.267 5.267 27 C -0.004 4.004 28 N -0.188 5.188 29 H 0.302 0.698 30 N -0.103 5.103 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.248 0.752 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.061 0.939 44 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -7.811 -25.992 -13.974 30.526 hybrid contribution -1.669 -1.253 -0.244 2.102 sum -9.481 -27.245 -14.218 32.161 Atomic orbital electron populations 1.20593 0.81823 1.05826 1.05272 1.25369 0.98035 0.80075 0.97904 1.71492 1.00340 1.26934 1.20969 1.24009 0.93248 0.88454 1.05565 1.16119 0.84815 0.81769 0.77696 1.90840 1.25132 1.73546 1.49241 1.45754 1.11705 1.04610 1.73366 1.21552 0.86164 0.88396 1.02895 1.22469 0.98970 0.92702 0.99440 0.89908 1.22730 0.96349 0.96443 1.00419 1.21609 0.93625 0.93898 0.90146 1.44854 1.55311 1.12678 1.20869 1.18659 1.08166 1.12917 0.97158 0.88989 1.24965 0.98237 0.99119 0.95558 1.69865 1.30194 1.49946 1.05149 0.86905 0.82836 0.79722 0.78714 1.21098 1.23319 1.20600 1.21781 0.96327 0.88606 0.93450 1.74637 0.99136 1.13901 1.19425 1.43070 1.04512 1.02718 1.52360 1.19319 0.87712 0.83209 1.01316 1.70200 1.18260 1.11298 1.26979 1.26219 0.90743 0.89663 0.93766 1.48065 1.04832 1.09687 1.56191 0.69835 1.78539 1.13915 0.91736 1.26063 0.88676 0.88293 0.87666 0.75168 0.90747 0.90397 0.90815 0.91159 0.93172 0.95769 0.92787 0.95689 0.93888 0.74258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 9.84 36.01 0.35 -0.27 16 2 C 0.26 3.40 7.94 -155.24 -1.23 2.17 16 3 N -0.47 -7.30 11.09 -8.47 -0.09 -7.39 16 4 C 0.17 2.89 7.96 -156.30 -1.24 1.64 16 5 C 0.62 10.93 7.83 -12.34 -0.10 10.83 16 6 O -0.52 -10.34 17.08 5.32 0.09 -10.25 16 7 N -0.70 -11.36 5.43 -61.26 -0.33 -11.69 16 8 C 0.13 2.05 5.00 -4.04 -0.02 2.03 16 9 C -0.12 -1.92 2.98 -88.79 -0.26 -2.19 16 10 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 11 C -0.12 -1.87 6.54 -24.58 -0.16 -2.03 16 12 C 0.13 2.59 7.23 -2.53 -0.02 2.57 16 13 N -0.61 -15.01 3.22 -169.83 -0.55 -15.56 16 14 C -0.24 -7.02 10.56 -15.06 -0.16 -7.18 16 15 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 16 C 0.02 0.59 5.43 -17.43 -0.09 0.50 16 17 N -0.91 -28.68 13.97 55.49 0.78 -27.91 16 18 Si 0.89 23.32 24.38 -169.99 -4.15 19.18 16 19 H -0.28 -7.27 6.83 56.52 0.39 -6.88 16 20 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 21 H -0.28 -7.17 6.87 56.52 0.39 -6.79 16 22 C 0.12 2.71 4.55 -2.90 -0.01 2.70 16 23 N -0.24 -4.02 12.02 32.08 0.39 -3.63 16 24 N -0.23 -3.30 3.52 -10.92 -0.04 -3.34 16 25 C 0.45 5.17 8.73 -320.52 -2.80 2.37 16 26 N -0.54 -3.99 8.79 -14.86 -0.13 -4.12 16 27 C 0.30 0.77 13.12 -90.67 -1.19 -0.42 16 28 N -0.47 -1.86 7.44 29.53 0.22 -1.64 16 29 H 0.45 -0.08 8.96 -182.35 -1.63 -1.72 16 30 N -0.27 -2.86 12.81 30.08 0.39 -2.47 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.73 6.30 -51.93 -0.33 0.40 16 34 H 0.41 6.48 8.11 -40.82 -0.33 6.15 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.29 8.00 -51.93 -0.42 0.87 16 37 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 42 H 0.03 0.60 3.55 -51.93 -0.18 0.42 16 43 H 0.04 1.02 7.73 -51.93 -0.40 0.62 16 44 H 0.24 -0.86 8.06 -52.49 -0.42 -1.28 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -41.32 370.39 -11.47 -52.78 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.68 Total: -2.26 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: -6.94 Total: 12.73 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: 0.62 Total: -77.75 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.15 Total: 19.18 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -41.32 -11.47 -52.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028724329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.486 kcal (2) G-P(sol) polarization free energy of solvation -41.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 212.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 200.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds