Wall clock time and date at job start Sat Apr 11 2020 07:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30871 * 126.20189 * 2 1 4 4 C 1.34577 * 107.28346 * 180.15658 * 3 2 1 5 5 C 1.47836 * 126.01818 * 179.83429 * 4 3 2 6 6 O 1.21557 * 119.99874 * 179.69330 * 5 4 3 7 7 N 1.34773 * 120.00154 * 359.69775 * 5 4 3 8 8 C 1.46497 * 120.00126 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47269 * 179.97438 * 8 7 5 10 10 H 1.08999 * 110.64418 * 305.70436 * 9 8 7 11 11 C 1.55153 * 110.72131 * 182.55676 * 9 8 7 12 12 C 1.54908 * 101.58264 * 206.13657 * 11 9 8 13 13 N 1.47422 * 104.83520 * 37.00820 * 12 11 9 14 14 C 1.36931 * 125.65120 * 155.90119 * 13 12 11 15 15 H 1.08003 * 120.00373 * 342.05519 * 14 13 12 16 16 C 1.38817 * 120.00368 * 162.05722 * 14 13 12 17 17 N 1.31618 * 120.00257 * 156.24102 * 16 14 13 18 18 Si 1.86794 * 119.99605 * 336.24746 * 16 14 13 19 19 H 1.48497 * 109.47474 * 84.66961 * 18 16 14 20 20 H 1.48500 * 109.47079 * 204.66716 * 18 16 14 21 21 H 1.48499 * 109.47398 * 324.66604 * 18 16 14 22 22 C 1.47318 * 108.73377 * 335.71885 * 13 12 11 23 23 N 1.31558 * 107.95735 * 359.57492 * 4 3 2 24 24 N 1.28851 * 108.70770 * 0.26183 * 23 4 3 25 25 C 1.40104 * 125.77265 * 180.02562 * 24 23 4 26 26 N 1.33626 * 125.59848 * 179.66216 * 25 24 23 27 27 C 1.30804 * 109.79178 * 179.85949 * 26 25 24 28 28 N 1.34440 * 108.19561 * 0.40612 * 27 26 25 29 29 H 0.96996 * 126.77376 * 179.78799 * 28 27 26 30 30 N 1.31152 * 125.59459 * 359.97438 * 25 24 23 31 31 H 1.09001 * 109.46753 * 270.31210 * 1 2 3 32 32 H 1.08997 * 109.47039 * 30.31278 * 1 2 3 33 33 H 1.09001 * 109.47155 * 150.31174 * 1 2 3 34 34 H 0.97010 * 120.00069 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.47237 * 59.99649 * 8 7 5 36 36 H 1.08993 * 109.47267 * 299.99445 * 8 7 5 37 37 H 1.09001 * 111.00694 * 324.20899 * 11 9 8 38 38 H 1.09006 * 111.00389 * 88.02806 * 11 9 8 39 39 H 1.09003 * 110.36844 * 155.85054 * 12 11 9 40 40 H 1.09006 * 110.36672 * 278.06244 * 12 11 9 41 41 H 0.96996 * 119.99965 * 179.97438 * 17 16 14 42 42 H 1.08998 * 110.06431 * 241.86943 * 22 13 12 43 43 H 1.09000 * 109.85276 * 120.60635 * 22 13 12 44 44 H 1.08000 * 125.90426 * 180.16312 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2800 1.0560 0.0000 4 6 3.5531 0.6197 -0.0035 5 6 4.7631 1.4690 -0.0083 6 8 5.8654 0.9565 -0.0055 7 7 4.6442 2.8115 -0.0156 8 6 5.8433 3.6531 -0.0197 9 6 5.4321 5.1267 -0.0284 10 1 4.7559 5.3321 -0.8583 11 6 6.6810 6.0448 -0.0977 12 6 6.1533 7.3387 0.5709 13 7 5.2665 6.8706 1.6515 14 6 4.9426 7.5756 2.7798 15 1 5.5491 8.4156 3.0845 16 6 3.8346 7.2105 3.5322 17 7 3.7679 7.5353 4.8059 18 14 2.4382 6.2582 2.7368 19 1 2.7568 4.8079 2.7512 20 1 1.1827 6.4967 3.4931 21 1 2.2649 6.7130 1.3338 22 6 4.7827 5.5204 1.3151 23 7 3.5310 -0.6956 0.0037 24 7 2.3039 -1.0884 0.0059 25 6 1.8703 -2.4207 0.0137 26 7 0.5965 -2.8241 0.0224 27 6 0.5458 -4.1311 0.0250 28 7 1.8058 -4.6001 0.0270 29 1 2.0790 -5.5308 0.0320 30 7 2.6483 -3.4766 0.0196 31 1 -0.3633 0.0056 1.0277 32 1 -0.3633 0.8871 -0.5187 33 1 -0.3633 -0.8928 -0.5090 34 1 3.7646 3.2205 -0.0181 35 1 6.4362 3.4364 -0.9083 36 1 6.4355 3.4461 0.8716 37 1 7.5092 5.6213 0.4704 38 1 6.9731 6.2297 -1.1315 39 1 6.9802 7.9174 0.9825 40 1 5.5940 7.9366 -0.1488 41 1 2.9935 7.2805 5.3315 42 1 3.6974 5.5264 1.2145 43 1 5.0813 4.8160 2.0915 44 1 -0.3528 -4.7301 0.0292 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028724329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:07 Heat of formation + Delta-G solvation = 170.909647 kcal Electronic energy + Delta-G solvation = -29567.579742 eV Core-core repulsion = 25366.782135 eV Total energy + Delta-G solvation = -4200.797606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.08087 -43.41343 -40.92625 -39.48346 -36.31463 -36.08139 -34.67601 -34.48766 -33.27518 -32.42984 -31.99657 -30.27104 -29.28159 -27.97041 -26.54184 -25.06409 -24.26208 -23.65586 -22.26528 -21.81758 -21.68171 -21.22542 -19.89904 -19.09785 -18.87231 -18.51286 -18.16345 -17.81634 -17.19340 -16.76794 -16.39512 -16.05736 -15.92985 -15.52092 -15.35096 -15.08885 -14.96897 -14.36836 -14.19659 -14.03021 -13.98034 -13.49505 -13.48360 -13.24176 -13.08603 -13.00892 -12.74525 -12.63932 -12.39730 -12.16449 -11.94894 -11.83736 -11.62111 -11.56534 -11.50331 -11.43514 -11.24401 -11.20573 -10.75719 -10.55864 -10.26047 -9.06499 -8.19235 -5.42912 -0.51976 0.18607 0.38780 0.77084 1.31566 1.36598 1.47314 1.51516 1.61496 1.85581 1.97924 2.41432 2.64080 2.75516 3.01088 3.20658 3.31282 3.57889 3.68825 3.74469 3.81570 3.87794 4.34008 4.36508 4.48947 4.53082 4.55048 4.58571 4.62965 4.64708 4.68431 4.75527 4.86274 4.91339 5.02801 5.03399 5.11245 5.13656 5.23782 5.42846 5.46416 5.69253 5.96934 6.09680 6.10516 6.40659 6.72402 6.76764 6.84766 7.54738 8.11656 9.01032 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.002558 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.028877 B =10943.370392 C =12172.860367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.265 3.735 3 N -0.491 5.491 4 C 0.148 3.852 5 C 0.616 3.384 6 O -0.547 6.547 7 N -0.695 5.695 8 C 0.137 3.863 9 C -0.100 4.100 10 H 0.108 0.892 11 C -0.105 4.105 12 C 0.122 3.878 13 N -0.630 5.630 14 C -0.234 4.234 15 H 0.062 0.938 16 C -0.042 4.042 17 N -0.956 5.956 18 Si 0.952 3.048 19 H -0.278 1.278 20 H -0.310 1.310 21 H -0.265 1.265 22 C 0.117 3.883 23 N -0.265 5.265 24 N -0.235 5.235 25 C 0.425 3.575 26 N -0.552 5.552 27 C 0.324 3.676 28 N -0.450 5.450 29 H 0.471 0.529 30 N -0.317 5.317 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.415 0.585 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.047 0.953 40 H 0.038 0.962 41 H 0.261 0.739 42 H 0.016 0.984 43 H 0.019 0.981 44 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.539 -28.485 -16.930 35.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.010 4.010 3 N -0.218 5.218 4 C -0.133 4.133 5 C 0.397 3.603 6 O -0.422 6.422 7 N -0.347 5.347 8 C 0.014 3.986 9 C -0.119 4.119 10 H 0.126 0.874 11 C -0.143 4.143 12 C -0.002 4.002 13 N -0.357 5.357 14 C -0.363 4.363 15 H 0.079 0.921 16 C -0.237 4.237 17 N -0.603 5.603 18 Si 0.782 3.218 19 H -0.205 1.205 20 H -0.238 1.238 21 H -0.191 1.191 22 C -0.007 4.007 23 N -0.102 5.102 24 N -0.028 5.028 25 C 0.056 3.944 26 N -0.285 5.285 27 C 0.027 3.973 28 N -0.173 5.173 29 H 0.323 0.677 30 N -0.152 5.152 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.252 0.748 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.134 0.866 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.033 0.967 43 H 0.037 0.963 44 H 0.321 0.679 Dipole moment (debyes) X Y Z Total from point charges -9.795 -28.519 -16.723 34.481 hybrid contribution -1.059 -0.609 0.614 1.368 sum -10.855 -29.128 -16.109 35.011 Atomic orbital electron populations 1.20834 0.78483 1.07241 1.06399 1.26193 0.99485 0.79271 0.96003 1.71446 0.99840 1.28246 1.22262 1.23862 0.93696 0.88627 1.07079 1.16248 0.84742 0.82151 0.77115 1.90804 1.26316 1.74155 1.50974 1.45745 1.12122 1.04227 1.72580 1.21561 0.85963 0.87543 1.03502 1.22400 0.99485 0.93271 0.96735 0.87410 1.22714 0.95564 0.93416 1.02637 1.21895 0.92813 0.96290 0.89182 1.45012 1.55923 1.13718 1.21068 1.18649 1.07246 1.11888 0.98493 0.92062 1.25632 1.00717 1.01420 0.95891 1.69991 1.30916 1.52810 1.06596 0.85851 0.79220 0.78633 0.78088 1.20477 1.23840 1.19126 1.21862 0.96080 0.86846 0.95955 1.74512 1.01320 1.14086 1.20260 1.43172 1.03701 1.04348 1.51543 1.19488 0.89287 0.82258 1.03328 1.70204 1.16429 1.13620 1.28249 1.27493 0.91590 0.88493 0.89752 1.47967 1.04726 1.09278 1.55286 0.67660 1.78372 1.16657 0.93293 1.26915 0.87427 0.86914 0.86081 0.74806 0.88076 0.91845 0.90584 0.86598 0.93461 0.94426 0.92988 0.96705 0.96315 0.67949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 9.84 71.24 0.70 -0.31 16 2 C 0.27 6.73 7.94 138.07 1.10 7.83 16 3 N -0.49 -15.13 11.09 -180.70 -2.00 -17.14 16 4 C 0.15 5.18 7.96 137.09 1.09 6.27 16 5 C 0.62 22.09 7.83 86.78 0.68 22.77 16 6 O -0.55 -22.37 17.08 -3.89 -0.07 -22.44 16 7 N -0.70 -21.90 5.43 -465.99 -2.53 -24.43 16 8 C 0.14 3.96 5.00 86.38 0.43 4.39 16 9 C -0.10 -3.00 2.98 -9.61 -0.03 -3.03 16 10 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 11 C -0.10 -2.87 6.54 31.98 0.21 -2.66 16 12 C 0.12 4.54 7.23 86.86 0.63 5.17 16 13 N -0.63 -30.79 3.22 -691.23 -2.22 -33.02 16 14 C -0.23 -13.92 10.56 84.04 0.89 -13.03 16 15 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 16 C -0.04 -2.59 5.43 84.86 0.46 -2.13 16 17 N -0.96 -62.59 13.97 21.65 0.30 -62.29 16 18 Si 0.95 49.20 24.38 68.60 1.67 50.87 16 19 H -0.28 -13.92 6.83 99.48 0.68 -13.24 16 20 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 21 H -0.27 -12.96 6.87 99.48 0.68 -12.27 16 22 C 0.12 5.04 4.55 86.67 0.39 5.43 16 23 N -0.27 -9.30 12.02 -52.42 -0.63 -9.93 16 24 N -0.24 -6.67 3.52 -188.45 -0.66 -7.33 16 25 C 0.43 9.35 8.73 260.69 2.28 11.62 16 26 N -0.55 -6.80 8.79 -200.94 -1.77 -8.57 16 27 C 0.32 0.40 13.12 180.36 2.37 2.77 16 28 N -0.45 -2.42 7.44 -60.50 -0.45 -2.87 16 29 H 0.47 -1.49 8.96 -213.11 -1.91 -3.40 16 30 N -0.32 -6.54 12.81 -58.74 -0.75 -7.29 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.12 1.36 6.30 -2.39 -0.02 1.34 16 34 H 0.42 12.59 8.11 -92.70 -0.75 11.84 16 35 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.06 2.05 8.00 -2.39 -0.02 2.03 16 37 H 0.08 2.08 8.05 -2.39 -0.02 2.06 16 38 H 0.12 2.24 8.14 -2.38 -0.02 2.22 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 42 H 0.02 0.70 3.55 -2.39 -0.01 0.69 16 43 H 0.02 0.89 7.73 -2.39 -0.02 0.87 16 44 H 0.31 -4.12 8.06 -2.91 -0.02 -4.15 16 Total: -1.00 -96.92 370.39 0.46 -96.47 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -1.63 Total: 2.88 kcal Atomic # 6 Polarization: 33.90 SS G_CDS: 11.19 Total: 45.09 kcal Atomic # 7 Polarization: -162.15 SS G_CDS: -10.72 Total: -172.87 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.07 Total: -22.44 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 1.67 Total: 50.87 kcal Total: -96.92 0.46 -96.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028724329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 267.376 kcal (2) G-P(sol) polarization free energy of solvation -96.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds