Wall clock time and date at job start Sat Apr 11 2020 07:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30869 * 126.20255 * 2 1 4 4 C 1.34573 * 107.28936 * 180.15989 * 3 2 1 5 5 C 1.47833 * 126.02109 * 179.83487 * 4 3 2 6 6 O 1.21562 * 119.99446 * 185.71270 * 5 4 3 7 7 N 1.34772 * 120.00274 * 5.71208 * 5 4 3 8 8 C 1.46500 * 119.99846 * 356.09414 * 7 5 4 9 9 C 1.46497 * 120.00233 * 176.09477 * 7 5 4 10 10 H 1.09005 * 110.64041 * 356.85714 * 9 7 5 11 11 C 1.55153 * 110.72430 * 119.99724 * 9 7 5 12 12 C 1.54909 * 101.58279 * 153.86593 * 11 9 7 13 13 N 1.47423 * 104.92722 * 322.93914 * 12 11 9 14 14 C 1.36942 * 125.64355 * 204.15662 * 13 12 11 15 15 H 1.08007 * 119.99716 * 180.02562 * 14 13 12 16 16 C 1.38810 * 120.00265 * 0.02562 * 14 13 12 17 17 N 1.31614 * 120.00097 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99977 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47036 * 60.00158 * 18 16 14 20 20 H 1.48495 * 109.47047 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47333 * 300.00253 * 18 16 14 22 22 C 1.47288 * 108.56169 * 24.15334 * 13 12 11 23 23 N 1.31555 * 107.95252 * 359.56475 * 4 3 2 24 24 N 1.28856 * 108.71011 * 0.26964 * 23 4 3 25 25 C 1.40105 * 125.77251 * 180.02562 * 24 23 4 26 26 N 1.33628 * 125.59529 * 179.66741 * 25 24 23 27 27 C 1.30803 * 109.78701 * 179.85288 * 26 25 24 28 28 N 1.34431 * 108.19956 * 0.40058 * 27 26 25 29 29 H 0.97001 * 126.77468 * 179.78010 * 28 27 26 30 30 N 1.31151 * 125.59262 * 359.96893 * 25 24 23 31 31 H 1.09004 * 109.46898 * 270.31919 * 1 2 3 32 32 H 1.08992 * 109.47425 * 30.31529 * 1 2 3 33 33 H 1.09000 * 109.47145 * 150.32274 * 1 2 3 34 34 H 1.09005 * 109.47056 * 275.71363 * 8 7 5 35 35 H 1.09002 * 109.47640 * 35.71374 * 8 7 5 36 36 H 1.08997 * 109.47194 * 155.71540 * 8 7 5 37 37 H 1.09003 * 111.00377 * 35.79300 * 11 9 7 38 38 H 1.09001 * 111.03981 * 271.95945 * 11 9 7 39 39 H 1.08995 * 110.36866 * 81.83174 * 12 11 9 40 40 H 1.09003 * 110.36621 * 204.04710 * 12 11 9 41 41 H 0.96999 * 120.00473 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.85653 * 239.50395 * 22 13 12 43 43 H 1.09000 * 109.86904 * 118.35948 * 22 13 12 44 44 H 1.08006 * 125.90166 * 180.15590 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0560 0.0000 4 6 3.5530 0.6198 -0.0036 5 6 4.7630 1.4692 -0.0084 6 8 5.8620 0.9607 -0.1161 7 7 4.6478 2.8070 0.1067 8 6 3.3211 3.4268 0.1504 9 6 5.8491 3.6414 0.1881 10 1 6.7467 3.0229 0.1974 11 6 5.8937 4.6557 -0.9851 12 6 6.7485 5.7961 -0.3782 13 7 6.3411 5.8641 1.0370 14 6 6.4507 6.9628 1.8471 15 1 6.1225 6.9109 2.8747 16 6 6.9837 8.1431 1.3474 17 7 7.3841 8.2062 0.0953 18 14 7.1326 9.6420 2.4523 19 1 8.0024 9.3181 3.6115 20 1 7.7288 10.7651 1.6852 21 1 5.7854 10.0342 2.9387 22 6 5.7971 4.5536 1.4319 23 7 3.5310 -0.6955 0.0038 24 7 2.3038 -1.0884 0.0060 25 6 1.8703 -2.4207 0.0140 26 7 0.5965 -2.8241 0.0226 27 6 0.5459 -4.1311 0.0253 28 7 1.8058 -4.6000 0.0273 29 1 2.0790 -5.5307 0.0324 30 7 2.6484 -3.4765 0.0199 31 1 -0.3633 0.0057 1.0277 32 1 -0.3634 0.8871 -0.5187 33 1 -0.3633 -0.8929 -0.5088 34 1 2.9564 3.5766 -0.8658 35 1 2.6336 2.7762 0.6910 36 1 3.3861 4.3889 0.6585 37 1 4.8930 5.0082 -1.2350 38 1 6.3825 4.2231 -1.8581 39 1 7.8093 5.5579 -0.4564 40 1 6.5342 6.7394 -0.8804 41 1 7.7562 9.0311 -0.2540 42 1 4.7657 4.6662 1.7661 43 1 6.4033 4.1263 2.2307 44 1 -0.3528 -4.7302 0.0295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033311186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:13 Heat of formation + Delta-G solvation = 221.727340 kcal Electronic energy + Delta-G solvation = -29869.062230 eV Core-core repulsion = 25670.468244 eV Total energy + Delta-G solvation = -4198.593986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.05030 -42.85954 -39.65367 -37.23800 -35.39276 -34.62261 -33.76615 -32.62546 -32.10170 -31.42512 -29.20551 -28.43409 -27.59441 -26.65103 -25.57526 -24.22504 -23.65414 -22.81147 -21.14404 -20.26250 -20.13246 -19.35905 -18.82697 -17.81428 -17.54708 -16.97181 -16.82177 -16.13606 -15.98577 -15.58586 -14.90507 -14.67235 -14.47253 -13.99733 -13.76130 -13.41151 -13.33211 -12.98407 -12.87756 -12.79179 -12.61724 -12.25264 -11.91373 -11.87035 -11.56507 -11.46110 -10.99116 -10.97018 -10.90975 -10.79550 -10.74632 -10.46527 -10.38421 -10.25498 -10.09843 -9.86170 -9.74344 -9.57226 -9.48362 -8.60624 -8.25578 -6.79301 -5.60180 -3.02530 0.37576 0.99047 1.13562 1.76854 2.04604 2.30187 2.91965 3.34540 3.38931 3.44717 3.48682 3.50175 3.66196 3.93581 4.21461 4.47321 4.54936 4.85327 5.12066 5.20703 5.27770 5.40543 5.49071 5.52123 5.58104 5.65961 5.68145 5.78711 5.85972 5.92891 6.00661 6.13558 6.22476 6.36077 6.37698 6.47344 6.62649 6.67718 6.78519 6.96646 7.05809 7.52464 7.58872 7.66544 7.75264 7.90001 8.26608 8.40416 9.26050 9.86411 10.51423 11.43350 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.030458 B = 0.002057 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.064919 B =13606.226096 C =13990.466405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.255 3.745 3 N -0.466 5.466 4 C 0.177 3.823 5 C 0.609 3.391 6 O -0.519 6.519 7 N -0.576 5.576 8 C 0.066 3.934 9 C 0.127 3.873 10 H 0.105 0.895 11 C -0.150 4.150 12 C 0.153 3.847 13 N -0.602 5.602 14 C -0.221 4.221 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.922 5.922 18 Si 0.916 3.084 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.128 3.872 23 N -0.239 5.239 24 N -0.234 5.234 25 C 0.454 3.546 26 N -0.536 5.536 27 C 0.294 3.706 28 N -0.468 5.468 29 H 0.453 0.547 30 N -0.269 5.269 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.015 0.985 40 H 0.110 0.890 41 H 0.253 0.747 42 H 0.033 0.967 43 H 0.027 0.973 44 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.875 -26.878 -2.298 34.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.020 4.020 3 N -0.193 5.193 4 C -0.104 4.104 5 C 0.391 3.609 6 O -0.392 6.392 7 N -0.308 5.308 8 C -0.076 4.076 9 C 0.024 3.976 10 H 0.123 0.877 11 C -0.190 4.190 12 C 0.028 3.972 13 N -0.329 5.329 14 C -0.349 4.349 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.571 5.571 18 Si 0.746 3.254 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.001 3.999 23 N -0.073 5.073 24 N -0.026 5.026 25 C 0.084 3.916 26 N -0.268 5.268 27 C -0.005 4.005 28 N -0.188 5.188 29 H 0.301 0.699 30 N -0.102 5.102 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.033 0.967 40 H 0.128 0.872 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -19.174 -26.618 -2.347 32.889 hybrid contribution -0.123 -0.209 0.588 0.636 sum -19.296 -26.827 -1.759 33.092 Atomic orbital electron populations 1.20562 0.82006 1.05790 1.05037 1.25560 0.98120 0.80370 0.97967 1.71729 1.00437 1.25692 1.21399 1.24057 0.93179 0.88275 1.04877 1.16247 0.84732 0.81639 0.78272 1.90828 1.25511 1.73184 1.49679 1.47603 1.08882 1.04353 1.69934 1.22285 0.82647 1.00025 1.02675 1.22358 0.86448 0.91309 0.97472 0.87691 1.23384 1.01714 0.97436 0.96470 1.21950 0.93754 0.97006 0.84516 1.44484 1.72829 1.06664 1.08910 1.19019 1.34831 0.87950 0.93094 0.90499 1.24791 1.01153 0.98070 0.96680 1.69773 1.47800 1.26330 1.13177 0.86132 0.77707 0.82234 0.79290 1.21253 1.21604 1.21168 1.21594 0.97418 0.87051 0.93825 1.74668 0.99016 1.13997 1.19653 1.43098 1.04566 1.02611 1.52365 1.19358 0.87674 0.83326 1.01249 1.70196 1.18279 1.11262 1.27056 1.26203 0.90739 0.89697 0.93846 1.48069 1.04833 1.09712 1.56182 0.69854 1.78558 1.13901 0.91747 1.26032 0.88866 0.88364 0.87793 0.92559 0.88313 0.90208 0.91539 0.91953 0.96683 0.87215 0.93658 0.94896 0.95493 0.74323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 9.84 36.01 0.35 -0.16 16 2 C 0.25 3.02 7.94 -155.25 -1.23 1.78 16 3 N -0.47 -6.60 7.85 -8.47 -0.07 -6.66 16 4 C 0.18 3.01 7.66 -156.31 -1.20 1.81 16 5 C 0.61 11.56 7.68 -12.34 -0.09 11.46 16 6 O -0.52 -11.35 16.47 5.31 0.09 -11.26 16 7 N -0.58 -10.35 2.89 -172.95 -0.50 -10.84 16 8 C 0.07 1.01 8.40 59.85 0.50 1.51 16 9 C 0.13 2.55 3.35 -66.10 -0.22 2.32 16 10 H 0.11 2.23 7.01 -51.93 -0.36 1.86 16 11 C -0.15 -3.07 6.66 -24.58 -0.16 -3.23 16 12 C 0.15 3.82 5.88 -2.53 -0.01 3.81 16 13 N -0.60 -15.82 3.40 -169.86 -0.58 -16.40 16 14 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 15 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 16 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 17 N -0.92 -27.15 10.09 55.49 0.56 -26.59 16 18 Si 0.92 22.32 29.55 -169.99 -5.02 17.30 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.13 2.83 6.78 -2.92 -0.02 2.81 16 23 N -0.24 -4.04 12.03 32.08 0.39 -3.66 16 24 N -0.23 -3.17 3.52 -10.92 -0.04 -3.21 16 25 C 0.45 4.97 8.73 -320.52 -2.80 2.17 16 26 N -0.54 -3.70 8.79 -14.86 -0.13 -3.83 16 27 C 0.29 0.66 13.12 -90.68 -1.19 -0.53 16 28 N -0.47 -1.75 7.44 29.53 0.22 -1.53 16 29 H 0.45 -0.16 8.96 -182.34 -1.63 -1.79 16 30 N -0.27 -2.81 12.81 30.08 0.39 -2.42 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.63 6.30 -51.93 -0.33 0.30 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.41 5.24 -51.93 -0.27 1.14 16 36 H 0.08 1.27 6.17 -51.93 -0.32 0.95 16 37 H 0.07 1.30 7.34 -51.93 -0.38 0.92 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.11 3.03 5.87 -51.93 -0.30 2.73 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.03 0.70 6.01 -51.93 -0.31 0.39 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.24 -0.94 8.06 -52.48 -0.42 -1.37 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -39.09 363.91 -11.96 -51.05 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -6.42 Total: -4.38 kcal Atomic # 6 Polarization: 23.27 SS G_CDS: -6.32 Total: 16.95 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: 0.24 Total: -75.14 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -39.09 -11.96 -51.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033311186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 272.775 kcal (2) G-P(sol) polarization free energy of solvation -39.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 233.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 221.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds