Wall clock time and date at job start Sat Apr 11 2020 07:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30868 * 126.20416 * 2 1 4 4 C 1.34567 * 107.29074 * 180.02562 * 3 2 1 5 5 C 1.47831 * 126.02655 * 179.97438 * 4 3 2 6 6 O 1.21563 * 120.00531 * 184.63029 * 5 4 3 7 7 N 1.34779 * 119.99660 * 4.62315 * 5 4 3 8 8 C 1.46500 * 119.99853 * 183.59377 * 7 5 4 9 9 C 1.46499 * 119.99982 * 3.59101 * 7 5 4 10 10 H 1.08999 * 110.77863 * 47.36118 * 9 7 5 11 11 C 1.55161 * 110.72232 * 284.12071 * 9 7 5 12 12 C 1.54913 * 101.57912 * 277.13976 * 11 9 7 13 13 N 1.47421 * 104.83563 * 322.98795 * 12 11 9 14 14 C 1.36930 * 125.65241 * 204.09286 * 13 12 11 15 15 H 1.07994 * 120.00421 * 174.00616 * 14 13 12 16 16 C 1.38820 * 119.99847 * 354.01621 * 14 13 12 17 17 N 1.31619 * 119.99912 * 4.70844 * 16 14 13 18 18 Si 1.86800 * 120.00033 * 184.71603 * 16 14 13 19 19 H 1.48495 * 109.47112 * 94.99822 * 18 16 14 20 20 H 1.48505 * 109.46974 * 214.99776 * 18 16 14 21 21 H 1.48498 * 109.47044 * 334.99396 * 18 16 14 22 22 C 1.47023 * 108.69990 * 24.13048 * 13 12 11 23 23 N 1.31567 * 107.95328 * 0.23252 * 4 3 2 24 24 N 1.28856 * 108.70607 * 359.62225 * 23 4 3 25 25 C 1.40102 * 125.76629 * 180.14757 * 24 23 4 26 26 N 1.33628 * 125.59272 * 179.97438 * 25 24 23 27 27 C 1.30803 * 109.79474 * 179.81739 * 26 25 24 28 28 N 1.34443 * 108.19174 * 0.43875 * 27 26 25 29 29 H 0.96994 * 126.77227 * 179.75152 * 28 27 26 30 30 N 1.31147 * 125.60084 * 0.26905 * 25 24 23 31 31 H 1.08999 * 109.47137 * 89.97543 * 1 2 3 32 32 H 1.09005 * 109.47185 * 209.97244 * 1 2 3 33 33 H 1.09001 * 109.46970 * 329.96960 * 1 2 3 34 34 H 1.09001 * 109.46799 * 274.60014 * 8 7 5 35 35 H 1.09000 * 109.47283 * 34.59847 * 8 7 5 36 36 H 1.08996 * 109.47103 * 154.60509 * 8 7 5 37 37 H 1.08996 * 111.00367 * 159.06552 * 11 9 7 38 38 H 1.09002 * 111.03581 * 35.22814 * 11 9 7 39 39 H 1.09001 * 110.36326 * 204.14906 * 12 11 9 40 40 H 1.09003 * 110.46053 * 81.87662 * 12 11 9 41 41 H 0.96992 * 120.00111 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.88266 * 118.35503 * 22 13 12 43 43 H 1.09004 * 109.88122 * 239.52045 * 22 13 12 44 44 H 1.07997 * 125.90603 * 180.17750 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0560 0.0000 4 6 3.5530 0.6198 -0.0006 5 6 4.7631 1.4690 -0.0013 6 8 5.8634 0.9593 -0.0868 7 7 4.6464 2.8084 0.0926 8 6 5.8393 3.6550 0.0127 9 6 3.3266 3.4177 0.2745 10 1 2.7699 2.9071 1.0604 11 6 2.5298 3.4093 -1.0568 12 6 3.0886 4.6706 -1.7616 13 7 3.2914 5.6497 -0.6783 14 6 3.3202 7.0105 -0.8275 15 1 3.3786 7.6480 0.0423 16 6 3.2741 7.5708 -2.0968 17 7 3.1095 6.7998 -3.1508 18 14 3.4459 9.4187 -2.3089 19 1 4.8632 9.7540 -2.5986 20 1 2.5903 9.8692 -3.4360 21 1 3.0206 10.1018 -1.0609 22 6 3.4587 4.9229 0.5887 23 7 3.5310 -0.6957 -0.0060 24 7 2.3038 -1.0884 -0.0007 25 6 1.8704 -2.4207 -0.0010 26 7 0.5965 -2.8242 0.0050 27 6 0.5457 -4.1312 -0.0012 28 7 1.8057 -4.6002 -0.0015 29 1 2.0789 -5.5309 -0.0021 30 7 2.6482 -3.4766 -0.0016 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3634 -0.8903 0.5134 33 1 -0.3633 0.8897 0.5143 34 1 6.2939 3.7363 1.0001 35 1 6.5538 3.2116 -0.6808 36 1 5.5578 4.6470 -0.3404 37 1 1.4599 3.5065 -0.8724 38 1 2.7444 2.5110 -1.6356 39 1 2.3685 5.0505 -2.4863 40 1 4.0359 4.4452 -2.2515 41 1 3.0769 7.1912 -4.0376 42 1 4.4439 5.1291 1.0072 43 1 2.6838 5.2238 1.2938 44 1 -0.3529 -4.7302 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033311187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:16 Heat of formation + Delta-G solvation = 227.924626 kcal Electronic energy + Delta-G solvation = -30874.968676 eV Core-core repulsion = 26676.643425 eV Total energy + Delta-G solvation = -4198.325251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.88046 -42.73828 -39.62843 -37.40676 -35.13172 -34.25490 -33.59780 -32.47048 -31.81568 -31.44231 -29.32226 -28.25728 -27.50674 -27.25756 -24.85420 -24.08548 -23.50538 -22.56066 -21.08490 -20.55629 -19.89982 -19.21272 -18.77254 -17.63488 -17.38189 -16.95271 -16.72043 -15.82463 -15.69992 -15.54597 -15.06548 -14.60600 -14.35419 -14.10438 -13.73675 -13.26328 -13.13426 -12.75226 -12.62564 -12.53078 -12.45965 -12.23860 -11.81418 -11.74182 -11.47829 -11.26145 -10.98006 -10.86646 -10.83923 -10.79196 -10.58405 -10.41086 -10.19263 -10.07660 -9.93376 -9.90215 -9.75355 -9.49583 -9.38647 -8.58206 -8.15786 -6.76823 -5.61997 -3.02359 0.50264 1.13677 1.25977 1.94440 2.16014 2.45191 3.08721 3.43461 3.47790 3.48784 3.50658 3.52198 3.84867 4.04061 4.36374 4.53014 4.59700 4.99100 5.24083 5.40830 5.41200 5.47656 5.51255 5.60724 5.68072 5.82185 5.83635 5.94687 5.99807 6.04745 6.12552 6.27547 6.38047 6.43134 6.49350 6.56002 6.67706 6.83814 6.90364 6.95944 7.11312 7.64302 7.68131 7.69085 7.91794 7.93395 8.37239 8.39965 9.26506 9.87360 10.53293 11.43212 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.021623 B = 0.002668 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.588259 B =10492.190994 C =11274.927030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.252 3.748 3 N -0.451 5.451 4 C 0.175 3.825 5 C 0.609 3.391 6 O -0.526 6.526 7 N -0.572 5.572 8 C 0.083 3.917 9 C 0.130 3.870 10 H 0.092 0.908 11 C -0.127 4.127 12 C 0.155 3.845 13 N -0.602 5.602 14 C -0.224 4.224 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.918 5.918 18 Si 0.911 3.089 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.281 1.281 22 C 0.125 3.875 23 N -0.242 5.242 24 N -0.236 5.236 25 C 0.457 3.543 26 N -0.535 5.535 27 C 0.293 3.707 28 N -0.469 5.469 29 H 0.452 0.548 30 N -0.272 5.272 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.012 0.988 41 H 0.251 0.749 42 H 0.034 0.966 43 H 0.035 0.965 44 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.512 -24.223 7.638 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.023 4.023 3 N -0.177 5.177 4 C -0.106 4.106 5 C 0.392 3.608 6 O -0.401 6.401 7 N -0.304 5.304 8 C -0.059 4.059 9 C 0.026 3.974 10 H 0.110 0.890 11 C -0.166 4.166 12 C 0.030 3.970 13 N -0.328 5.328 14 C -0.353 4.353 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.566 5.566 18 Si 0.742 3.258 19 H -0.217 1.217 20 H -0.219 1.219 21 H -0.207 1.207 22 C -0.001 4.001 23 N -0.077 5.077 24 N -0.029 5.029 25 C 0.087 3.913 26 N -0.267 5.267 27 C -0.006 4.006 28 N -0.190 5.190 29 H 0.300 0.700 30 N -0.106 5.106 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.030 0.970 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -7.900 -23.994 7.436 26.333 hybrid contribution -0.106 -0.008 -0.258 0.279 sum -8.005 -24.002 7.178 26.301 Atomic orbital electron populations 1.20551 0.82096 1.05636 1.05074 1.25566 0.98149 0.80210 0.98358 1.72009 1.00210 1.25398 1.20052 1.23969 0.93396 0.88137 1.05122 1.16172 0.84728 0.81670 0.78228 1.90804 1.25510 1.73287 1.50457 1.47621 1.09515 1.04108 1.69137 1.21857 0.86142 0.96489 1.01401 1.22353 0.81533 0.93901 0.99567 0.89012 1.23210 0.99149 0.99098 0.95163 1.21851 0.98788 0.85255 0.91102 1.44538 1.84636 1.02001 1.01664 1.19041 1.43342 0.80433 0.92447 0.90517 1.24797 1.02298 0.97916 0.95444 1.69894 1.56140 1.32836 0.97699 0.86103 0.77495 0.84917 0.77258 1.21735 1.21857 1.20682 1.21655 0.98770 0.88703 0.90996 1.74632 0.99103 1.14066 1.19909 1.43156 1.04594 1.02517 1.52645 1.19371 0.87600 0.83414 1.00909 1.70205 1.18367 1.11199 1.26941 1.26200 0.90710 0.89744 0.93934 1.48061 1.04853 1.09665 1.56384 0.69974 1.78536 1.13906 0.91756 1.26379 0.88884 0.87959 0.88327 0.92879 0.91323 0.87940 0.91093 0.92545 0.88700 0.97005 0.93824 0.94817 0.94720 0.74394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 9.85 36.01 0.35 -0.32 16 2 C 0.25 3.48 7.94 -155.25 -1.23 2.24 16 3 N -0.45 -7.36 6.15 -8.47 -0.05 -7.42 16 4 C 0.18 3.23 7.19 -156.30 -1.12 2.11 16 5 C 0.61 12.18 7.48 -12.33 -0.09 12.08 16 6 O -0.53 -11.66 16.78 5.31 0.09 -11.57 16 7 N -0.57 -10.89 2.96 -172.95 -0.51 -11.41 16 8 C 0.08 1.51 9.11 59.85 0.55 2.06 16 9 C 0.13 2.42 2.71 -66.09 -0.18 2.24 16 10 H 0.09 1.60 6.75 -51.93 -0.35 1.25 16 11 C -0.13 -2.53 5.08 -24.58 -0.12 -2.66 16 12 C 0.15 3.80 5.56 -2.53 -0.01 3.78 16 13 N -0.60 -15.02 2.97 -170.07 -0.51 -15.53 16 14 C -0.22 -6.12 10.26 -15.06 -0.15 -6.27 16 15 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 16 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 17 N -0.92 -26.77 10.19 55.49 0.57 -26.20 16 18 Si 0.91 22.01 29.56 -169.99 -5.02 16.99 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.12 2.57 6.00 -3.06 -0.02 2.55 16 23 N -0.24 -4.40 12.02 32.08 0.39 -4.01 16 24 N -0.24 -3.54 3.52 -10.92 -0.04 -3.57 16 25 C 0.46 5.57 8.73 -320.53 -2.80 2.77 16 26 N -0.54 -4.40 8.78 -14.86 -0.13 -4.54 16 27 C 0.29 0.98 13.12 -90.67 -1.19 -0.21 16 28 N -0.47 -2.21 7.44 29.53 0.22 -1.99 16 29 H 0.45 0.22 8.96 -182.35 -1.63 -1.41 16 30 N -0.27 -3.11 12.81 30.08 0.39 -2.73 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.80 6.29 -51.93 -0.33 0.48 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.25 7.62 -51.93 -0.40 0.86 16 36 H 0.10 2.07 5.75 -51.93 -0.30 1.77 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.06 1.14 6.54 -51.93 -0.34 0.80 16 39 H 0.10 2.62 6.14 -51.93 -0.32 2.31 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.03 0.68 6.01 -51.93 -0.31 0.37 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.24 -0.68 8.06 -52.49 -0.42 -1.10 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -38.28 360.13 -11.79 -50.07 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -6.48 Total: -3.58 kcal Atomic # 6 Polarization: 26.17 SS G_CDS: -6.12 Total: 20.05 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: 0.32 Total: -77.39 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.28 -11.79 -50.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033311187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 277.999 kcal (2) G-P(sol) polarization free energy of solvation -38.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 239.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 227.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds