Wall clock time and date at job start Sat Apr 11 2020 07:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35959 * 120.57446 * 2 1 4 4 C 1.40842 * 119.34083 * 180.27408 * 3 2 1 5 5 O 1.21863 * 119.75439 * 179.73296 * 4 3 2 6 6 O 1.34379 * 120.48746 * 359.76049 * 4 3 2 7 7 C 1.33722 * 121.20849 * 359.97252 * 6 4 3 8 8 C 1.50699 * 119.68967 * 180.02562 * 7 6 4 9 9 C 1.37595 * 120.61738 * 0.02562 * 7 6 4 10 10 C 1.47520 * 120.25628 * 179.97438 * 9 7 6 11 11 O 1.21597 * 119.99948 * 90.00337 * 10 9 7 12 12 N 1.34775 * 119.99844 * 270.00283 * 10 9 7 13 13 C 1.46900 * 120.46117 * 180.02562 * 12 10 9 14 14 C 1.53349 * 108.74479 * 124.34262 * 13 12 10 15 15 C 1.52559 * 109.12733 * 52.25717 * 14 13 12 16 16 C 1.52963 * 114.05870 * 75.53963 * 15 14 13 17 17 N 1.47166 * 87.85376 * 139.44344 * 16 15 14 18 18 C 1.36936 * 136.00143 * 153.08248 * 17 16 15 19 19 H 1.07994 * 119.99869 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99903 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99863 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46936 * 89.99757 * 22 20 18 24 24 H 1.48502 * 109.47124 * 209.99971 * 22 20 18 25 25 H 1.48498 * 109.46664 * 329.99449 * 22 20 18 26 26 C 1.47170 * 87.99578 * 333.33681 * 17 16 15 27 27 C 1.52550 * 113.43531 * 302.67267 * 15 14 13 28 28 C 1.46887 * 120.46522 * 359.97438 * 12 10 9 29 29 H 1.08994 * 109.47149 * 270.24022 * 1 2 3 30 30 H 1.09009 * 109.46766 * 30.23590 * 1 2 3 31 31 H 1.08996 * 109.47137 * 150.23124 * 1 2 3 32 32 H 1.08004 * 120.32804 * 0.02689 * 3 2 1 33 33 H 1.08996 * 109.47184 * 269.97432 * 8 7 6 34 34 H 1.08994 * 109.47130 * 29.98072 * 8 7 6 35 35 H 1.09001 * 109.46744 * 149.98246 * 8 7 6 36 36 H 1.08997 * 109.59040 * 4.56101 * 13 12 10 37 37 H 1.08995 * 109.58733 * 244.12120 * 13 12 10 38 38 H 1.09007 * 109.53130 * 292.36885 * 14 13 12 39 39 H 1.08996 * 109.58779 * 172.18987 * 14 13 12 40 40 H 1.09004 * 113.49269 * 24.69819 * 16 15 14 41 41 H 1.09006 * 113.49256 * 254.18848 * 16 15 14 42 42 H 0.97004 * 119.99747 * 180.02562 * 21 20 18 43 43 H 1.08999 * 113.48969 * 141.41363 * 26 17 16 44 44 H 1.08999 * 113.48708 * 271.91864 * 26 17 16 45 45 H 1.08997 * 109.53381 * 177.20989 * 27 15 14 46 46 H 1.09004 * 109.52572 * 297.42090 * 27 15 14 47 47 H 1.08998 * 109.59052 * 355.42705 * 28 12 10 48 48 H 1.09005 * 109.58621 * 115.86966 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1985 1.1706 0.0000 4 6 3.6066 1.1402 -0.0059 5 8 4.2340 2.1849 -0.0108 6 8 4.2633 -0.0322 -0.0066 7 6 3.6041 -1.1956 -0.0012 8 6 4.3751 -2.4904 -0.0017 9 6 2.2284 -1.2215 0.0047 10 6 1.5092 -2.5095 0.0100 11 8 1.2173 -3.0385 1.0652 12 7 1.1758 -3.1000 -1.1548 13 6 0.4592 -4.3823 -1.1614 14 6 -0.8279 -4.2233 -1.9797 15 6 -0.4830 -3.6360 -3.3448 16 6 0.1564 -4.6354 -4.3102 17 7 -0.6652 -4.0447 -5.3787 18 6 -0.5645 -3.9085 -6.7375 19 1 0.2983 -4.2985 -7.2568 20 6 -1.5710 -3.2681 -7.4473 21 7 -2.6224 -2.7924 -6.8143 22 14 -1.4333 -3.0816 -9.3009 23 1 -2.0543 -4.2563 -9.9640 24 1 -2.1349 -1.8442 -9.7274 25 1 -0.0013 -2.9960 -9.6847 26 6 -1.6395 -3.6589 -4.3453 27 6 0.2441 -2.2974 -3.2632 28 6 1.5230 -2.4697 -2.4354 29 1 -0.3633 0.0043 1.0276 30 1 -0.3633 0.8880 -0.5175 31 1 -0.3633 -0.8920 -0.5102 32 1 1.6733 2.1143 0.0004 33 1 4.5562 -2.8051 -1.0294 34 1 5.3279 -2.3460 0.5075 35 1 3.7986 -3.2567 0.5166 36 1 0.2097 -4.6668 -0.1392 37 1 1.0874 -5.1496 -1.6136 38 1 -1.5115 -3.5540 -1.4573 39 1 -1.3002 -5.1968 -2.1107 40 1 -0.0958 -5.6731 -4.0915 41 1 1.2265 -4.4812 -4.4494 42 1 -3.3259 -2.3452 -7.3104 43 1 -2.0872 -2.6796 -4.5143 44 1 -2.3797 -4.4312 -4.1362 45 1 0.5025 -1.9612 -4.2673 46 1 -0.4019 -1.5603 -2.7861 47 1 1.9739 -1.4944 -2.2523 48 1 2.2254 -3.1039 -2.9762 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035747992.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:19 Heat of formation + Delta-G solvation = -18.250078 kcal Electronic energy + Delta-G solvation = -31785.418773 eV Core-core repulsion = 27615.373427 eV Total energy + Delta-G solvation = -4170.045346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.42426 -40.54616 -39.05593 -38.04805 -36.24215 -35.92931 -33.25573 -32.53548 -31.22042 -30.50478 -29.13248 -28.38892 -26.93884 -25.09374 -24.71497 -23.56721 -23.32258 -22.31940 -21.63325 -20.31815 -18.64159 -18.56081 -17.27406 -17.21366 -16.80959 -16.74992 -16.35639 -15.32701 -15.13934 -14.91706 -14.73494 -14.43560 -14.09832 -14.04951 -13.93421 -13.85544 -13.67911 -13.55228 -13.50498 -12.93290 -12.77931 -12.73078 -12.64044 -12.35572 -12.23391 -12.07722 -11.79111 -11.17921 -11.12878 -10.97793 -10.90955 -10.77999 -10.59323 -10.50000 -10.35928 -10.04269 -9.80026 -9.71155 -9.30681 -8.86259 -8.67461 -8.61915 -6.93173 -5.82691 -3.14805 0.08503 1.04678 1.89518 2.28365 2.76128 2.95158 3.34490 3.39674 3.41579 3.75492 3.91010 4.19680 4.39572 4.40569 4.68702 4.80660 4.85143 4.90782 4.91532 5.00076 5.11172 5.20265 5.23957 5.27798 5.31063 5.35920 5.38767 5.45891 5.51984 5.54925 5.69468 5.73776 5.79239 5.82178 5.86211 6.03447 6.16261 6.24408 6.36494 6.47522 6.51807 6.69406 6.72136 6.77055 7.15220 7.18583 7.22478 7.27732 7.50036 7.89734 7.91930 8.98098 9.64938 10.58805 11.34581 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013634 B = 0.003082 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.164197 B = 9082.814603 C = 9907.190488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.060 3.940 3 C -0.277 4.277 4 C 0.499 3.501 5 O -0.474 6.474 6 O -0.256 6.256 7 C 0.183 3.817 8 C -0.120 4.120 9 C -0.252 4.252 10 C 0.580 3.420 11 O -0.534 6.534 12 N -0.593 5.593 13 C 0.114 3.886 14 C -0.114 4.114 15 C -0.116 4.116 16 C 0.128 3.872 17 N -0.608 5.608 18 C -0.218 4.218 19 H 0.080 0.920 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.167 3.833 27 C -0.093 4.093 28 C 0.107 3.893 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.164 0.836 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.031 0.969 41 H 0.036 0.964 42 H 0.253 0.747 43 H 0.070 0.930 44 H 0.024 0.976 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.056 0.851 15.532 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.059 3.941 3 C -0.296 4.296 4 C 0.352 3.648 5 O -0.364 6.364 6 O -0.165 6.165 7 C 0.134 3.866 8 C -0.176 4.176 9 C -0.256 4.256 10 C 0.366 3.634 11 O -0.412 6.412 12 N -0.325 5.325 13 C -0.008 4.008 14 C -0.153 4.153 15 C -0.117 4.117 16 C 0.001 3.999 17 N -0.333 5.333 18 C -0.345 4.345 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.041 3.959 27 C -0.131 4.131 28 C -0.016 4.016 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.182 0.818 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.042 0.958 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.307 1.193 15.704 18.294 hybrid contribution -0.341 0.132 -1.225 1.278 sum 8.966 1.325 14.479 17.082 Atomic orbital electron populations 1.21097 0.88866 1.04827 1.04115 1.20292 0.97639 0.90494 0.85712 1.22249 0.92542 1.00354 1.14484 1.19286 0.88432 0.80697 0.76412 1.91016 1.70868 1.25719 1.48790 1.83398 1.44625 1.14599 1.73870 1.22749 0.90305 0.85605 0.87984 1.21152 1.01489 0.89421 1.05538 1.19811 0.92715 0.95679 1.17407 1.17526 0.78837 0.83111 0.83930 1.90813 1.55004 1.64687 1.30661 1.48168 1.55944 1.22712 1.05672 1.21721 0.93501 0.83720 1.01850 1.21737 0.96213 1.01729 0.95601 1.22094 1.01048 0.95737 0.92862 1.22393 0.95206 0.94477 0.87798 1.45567 1.20942 1.65138 1.01670 1.18906 1.04023 1.31629 0.79988 0.90267 1.24764 0.96563 1.00996 0.97950 1.69823 1.09817 1.42756 1.34186 0.86157 0.77428 0.77291 0.85112 1.21640 1.21619 1.20611 1.22030 0.90495 0.99734 0.83636 1.21408 0.94604 0.96427 1.00702 1.21890 0.98576 0.97774 0.83340 0.88994 0.89472 0.89955 0.81809 0.87643 0.88464 0.87865 0.89160 0.91008 0.91751 0.90508 0.95187 0.94601 0.93667 0.91190 0.95837 0.89131 0.92017 0.90625 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 9.67 36.00 0.35 -0.82 16 2 C 0.06 0.61 5.81 -104.06 -0.60 0.00 16 3 C -0.28 -2.90 9.65 -39.42 -0.38 -3.28 16 4 C 0.50 6.37 7.93 31.72 0.25 6.62 16 5 O -0.47 -7.52 17.93 -19.61 -0.35 -7.87 16 6 O -0.26 -2.92 9.81 -17.62 -0.17 -3.10 16 7 C 0.18 1.77 7.02 -34.54 -0.24 1.52 16 8 C -0.12 -0.79 9.80 36.01 0.35 -0.44 16 9 C -0.25 -2.67 3.59 -104.96 -0.38 -3.04 16 10 C 0.58 6.77 4.11 -12.48 -0.05 6.71 16 11 O -0.53 -7.73 16.47 5.28 0.09 -7.65 16 12 N -0.59 -6.53 2.94 -173.88 -0.51 -7.05 16 13 C 0.11 1.26 6.35 -3.64 -0.02 1.24 16 14 C -0.11 -1.45 5.30 -26.78 -0.14 -1.59 16 15 C -0.12 -1.83 0.84 -155.02 -0.13 -1.96 16 16 C 0.13 2.31 7.63 -8.21 -0.06 2.24 16 17 N -0.61 -14.37 3.55 -184.66 -0.66 -15.03 16 18 C -0.22 -5.80 10.74 -15.06 -0.16 -5.96 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 21 N -0.92 -26.20 11.52 55.49 0.64 -25.56 16 22 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.17 3.58 6.54 -8.22 -0.05 3.52 16 27 C -0.09 -1.34 5.27 -26.80 -0.14 -1.48 16 28 C 0.11 1.19 6.24 -3.67 -0.02 1.16 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.64 8.09 -51.92 -0.42 0.22 16 31 H 0.08 0.82 7.07 -51.93 -0.37 0.45 16 32 H 0.16 1.45 8.06 -52.48 -0.42 1.02 16 33 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.74 6.99 -51.93 -0.36 0.38 16 36 H 0.09 1.02 6.97 -51.93 -0.36 0.66 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 40 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16 41 H 0.04 0.61 7.53 -51.93 -0.39 0.22 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.07 1.70 7.11 -51.93 -0.37 1.33 16 44 H 0.02 0.53 8.09 -51.93 -0.42 0.11 16 45 H 0.09 1.56 7.95 -51.93 -0.41 1.15 16 46 H 0.06 0.86 8.04 -51.93 -0.42 0.44 16 47 H 0.08 0.78 6.20 -51.93 -0.32 0.45 16 48 H 0.08 0.80 7.60 -51.93 -0.39 0.41 16 LS Contribution 387.78 15.07 5.84 5.84 Total: -1.00 -32.87 387.78 -8.84 -41.71 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -7.16 Total: -1.88 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.54 Total: 4.19 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.53 Total: -47.63 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.44 Total: -18.61 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.87 -8.84 -41.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035747992.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.461 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds