Wall clock time and date at job start Sat Apr 11 2020 07:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35966 * 120.56982 * 2 1 4 4 C 1.40839 * 119.33581 * 180.25427 * 3 2 1 5 5 O 1.21860 * 119.75197 * 179.69815 * 4 3 2 6 6 O 1.34374 * 120.49156 * 359.42399 * 4 3 2 7 7 C 1.33730 * 121.20432 * 0.58471 * 6 4 3 8 8 C 1.50701 * 119.68764 * 179.72829 * 7 6 4 9 9 C 1.37585 * 120.61813 * 359.70351 * 7 6 4 10 10 C 1.47520 * 120.25823 * 179.97438 * 9 7 6 11 11 O 1.21596 * 120.00241 * 270.02226 * 10 9 7 12 12 N 1.34776 * 120.00148 * 90.01828 * 10 9 7 13 13 C 1.46597 * 119.68747 * 359.73279 * 12 10 9 14 14 C 1.54789 * 110.71363 * 228.03059 * 13 12 10 15 15 C 1.51519 * 106.79698 * 308.79541 * 14 13 12 16 16 H 1.08997 * 109.28512 * 306.62295 * 15 14 13 17 17 C 1.55357 * 107.78637 * 65.18873 * 15 14 13 18 18 H 1.08998 * 111.51182 * 49.83452 * 17 15 14 19 19 C 1.53737 * 100.22397 * 168.51304 * 17 15 14 20 20 C 1.55297 * 101.83911 * 320.90172 * 19 17 15 21 21 N 1.45471 * 116.86434 * 181.93088 * 15 14 13 22 22 C 1.36941 * 126.40717 * 30.88582 * 21 15 14 23 23 H 1.08001 * 119.99834 * 0.02562 * 22 21 15 24 24 C 1.38811 * 119.99973 * 179.97438 * 22 21 15 25 25 N 1.31619 * 120.00006 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99848 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47430 * 59.99637 * 26 24 22 28 28 H 1.48502 * 109.47046 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46891 * 299.99587 * 26 24 22 30 30 C 1.47721 * 119.68772 * 179.97438 * 12 10 9 31 31 H 1.09003 * 109.47006 * 90.00177 * 1 2 3 32 32 H 1.08996 * 109.47678 * 210.00246 * 1 2 3 33 33 H 1.08998 * 109.47180 * 330.00493 * 1 2 3 34 34 H 1.08002 * 120.32684 * 359.97115 * 3 2 1 35 35 H 1.09003 * 109.46910 * 269.97656 * 8 7 6 36 36 H 1.08993 * 109.47321 * 29.97462 * 8 7 6 37 37 H 1.08997 * 109.46807 * 149.97704 * 8 7 6 38 38 H 1.09005 * 109.25140 * 348.12848 * 13 12 10 39 39 H 1.09001 * 109.25817 * 107.55644 * 13 12 10 40 40 H 1.09001 * 109.86992 * 189.66178 * 14 13 12 41 41 H 1.09006 * 110.49126 * 68.27168 * 14 13 12 42 42 H 1.08999 * 110.96007 * 79.03903 * 19 17 15 43 43 H 1.09004 * 110.96072 * 202.76828 * 19 17 15 44 44 H 1.08999 * 109.92287 * 263.12998 * 20 19 17 45 45 H 1.09000 * 109.92159 * 141.82508 * 20 19 17 46 46 H 0.97000 * 119.99784 * 180.02562 * 25 24 22 47 47 H 1.09005 * 110.07177 * 247.13009 * 30 12 10 48 48 H 1.09001 * 110.07018 * 8.59762 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1707 0.0000 4 6 3.6065 1.1404 -0.0054 5 8 4.2339 2.1851 -0.0111 6 8 4.2633 -0.0319 0.0010 7 6 3.6041 -1.1954 0.0011 8 6 4.3752 -2.4902 0.0023 9 6 2.2285 -1.2214 0.0006 10 6 1.5093 -2.5095 0.0001 11 8 1.2136 -3.0404 -1.0531 12 7 1.1800 -3.0979 1.1670 13 6 1.5451 -2.4549 2.4329 14 6 2.2095 -3.4720 3.3920 15 6 1.2886 -4.6732 3.4627 16 1 0.2848 -4.3421 3.7288 17 6 1.2541 -5.3282 2.0543 18 1 2.2588 -5.4898 1.6639 19 6 0.5459 -6.6518 2.3862 20 6 1.1766 -7.0153 3.7580 21 7 1.6875 -5.7561 4.3484 22 6 2.4020 -5.6345 5.5102 23 1 2.7246 -4.6601 5.8463 24 6 2.7107 -6.7634 6.2566 25 7 2.3171 -7.9508 5.8473 26 14 3.6847 -6.5974 7.8419 27 1 2.9407 -5.7317 8.7917 28 1 3.8814 -7.9401 8.4449 29 1 5.0071 -5.9884 7.5488 30 6 0.4594 -4.3874 1.1584 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 1.6732 2.1143 -0.0005 35 1 4.5615 -2.8031 -1.0252 36 1 5.3255 -2.3467 0.5163 37 1 3.7962 -3.2574 0.5164 38 1 2.2452 -1.6432 2.2348 39 1 0.6486 -2.0491 2.9016 40 1 2.3191 -3.0302 4.3824 41 1 3.1850 -3.7746 3.0112 42 1 -0.5303 -6.5057 2.4785 43 1 0.7719 -7.4129 1.6394 44 1 1.9973 -7.7182 3.6149 45 1 0.4203 -7.4513 4.4107 46 1 2.5325 -8.7396 6.3691 47 1 -0.5478 -4.2558 1.5539 48 1 0.4137 -4.7836 0.1440 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036766591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:22 Heat of formation + Delta-G solvation = -45.270502 kcal Electronic energy + Delta-G solvation = -31899.467775 eV Core-core repulsion = 27728.250735 eV Total energy + Delta-G solvation = -4171.217040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.43588 -40.45413 -38.57257 -38.01932 -36.24731 -35.49715 -33.23714 -32.63755 -31.69278 -29.89383 -29.18459 -28.56997 -27.82598 -25.21928 -24.61010 -23.43639 -22.53670 -22.35175 -20.72560 -20.13305 -19.55159 -18.59826 -17.94279 -17.27333 -16.90277 -16.49786 -16.25251 -15.43347 -15.19960 -14.97104 -14.45954 -14.41649 -14.11662 -14.04139 -13.92408 -13.89151 -13.69345 -13.49631 -13.09766 -13.01199 -12.75494 -12.67525 -12.62363 -12.54907 -12.09485 -11.77738 -11.59502 -11.52891 -10.97322 -10.88436 -10.86246 -10.78378 -10.59070 -10.30235 -10.20291 -10.03951 -9.94231 -9.70859 -9.59381 -8.75612 -8.69559 -8.65769 -6.92439 -5.79047 -3.12822 0.07090 1.03273 1.89585 2.31021 2.74255 2.93477 3.34814 3.39691 3.40977 3.76274 3.88444 4.18649 4.36644 4.42732 4.66966 4.84922 4.86227 4.90618 5.01928 5.02594 5.12383 5.13093 5.19732 5.29451 5.32570 5.40239 5.47130 5.47616 5.54816 5.66434 5.70322 5.75539 5.76698 5.88503 6.00444 6.05107 6.10173 6.20977 6.34688 6.48057 6.52391 6.68782 6.76713 6.93605 7.17333 7.21810 7.47034 7.53010 7.73240 7.91418 8.16508 9.11514 9.75165 10.42354 11.33235 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.003199 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.020913 B = 8749.857901 C = 9784.291313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.059 3.941 3 C -0.279 4.279 4 C 0.499 3.501 5 O -0.475 6.475 6 O -0.255 6.255 7 C 0.191 3.809 8 C -0.122 4.122 9 C -0.257 4.257 10 C 0.577 3.423 11 O -0.531 6.531 12 N -0.596 5.596 13 C 0.109 3.891 14 C -0.129 4.129 15 C 0.167 3.833 16 H 0.021 0.979 17 C -0.124 4.124 18 H 0.080 0.920 19 C -0.135 4.135 20 C 0.177 3.823 21 N -0.595 5.595 22 C -0.229 4.229 23 H 0.078 0.922 24 C -0.005 4.005 25 N -0.921 5.921 26 Si 0.909 3.091 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.125 3.875 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.164 0.836 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.038 0.962 46 H 0.253 0.747 47 H 0.072 0.928 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.483 11.980 -12.105 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.058 3.942 3 C -0.298 4.298 4 C 0.351 3.649 5 O -0.365 6.365 6 O -0.163 6.163 7 C 0.141 3.859 8 C -0.178 4.178 9 C -0.261 4.261 10 C 0.363 3.637 11 O -0.408 6.408 12 N -0.328 5.328 13 C -0.015 4.015 14 C -0.168 4.168 15 C 0.059 3.941 16 H 0.038 0.962 17 C -0.145 4.145 18 H 0.099 0.901 19 C -0.174 4.174 20 C 0.053 3.947 21 N -0.319 5.319 22 C -0.357 4.357 23 H 0.096 0.904 24 C -0.202 4.202 25 N -0.568 5.568 26 Si 0.740 3.260 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.004 3.996 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.181 0.819 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.091 0.909 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.059 12.049 -12.435 17.583 hybrid contribution 0.379 0.179 1.017 1.100 sum -2.681 12.228 -11.418 16.943 Atomic orbital electron populations 1.21052 0.89044 1.04361 1.04164 1.20267 0.97494 0.90545 0.85906 1.22221 0.92594 1.00222 1.14799 1.19281 0.88435 0.80748 0.76424 1.91013 1.70891 1.25754 1.48795 1.83418 1.44607 1.14582 1.73727 1.22828 0.90358 0.85584 0.87156 1.21199 1.01703 0.89205 1.05703 1.19805 0.92735 0.95657 1.17915 1.17570 0.78831 0.83215 0.84051 1.90813 1.54672 1.64401 1.30880 1.48358 1.56110 1.22837 1.05530 1.21973 1.00091 0.95519 0.83877 1.22067 0.99660 0.96361 0.98717 1.20664 0.95277 0.89183 0.89020 0.96177 1.22651 0.99543 0.95627 0.96633 0.90146 1.22705 0.99053 0.95606 1.00023 1.21538 0.96939 0.88349 0.87911 1.44202 1.63712 1.01070 1.22928 1.18926 1.26782 0.93317 0.96711 0.90444 1.24783 1.00949 0.95381 0.99089 1.69921 1.50222 0.97341 1.39274 0.86247 0.79877 0.76695 0.83218 1.21168 1.21592 1.21170 1.21736 0.94742 0.81382 1.01780 0.88956 0.90264 0.89654 0.81891 0.87509 0.88205 0.87794 0.90784 0.91183 0.90326 0.91217 0.92260 0.91973 0.92686 0.94356 0.93641 0.90933 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 9.67 36.00 0.35 -0.61 16 2 C 0.06 0.57 5.93 -104.05 -0.62 -0.05 16 3 C -0.28 -2.76 9.64 -39.41 -0.38 -3.14 16 4 C 0.50 6.31 7.93 31.72 0.25 6.57 16 5 O -0.47 -7.46 17.93 -19.60 -0.35 -7.81 16 6 O -0.25 -3.03 9.81 -17.63 -0.17 -3.20 16 7 C 0.19 2.00 6.72 -34.55 -0.23 1.76 16 8 C -0.12 -1.05 9.80 36.01 0.35 -0.70 16 9 C -0.26 -2.78 3.64 -104.97 -0.38 -3.17 16 10 C 0.58 7.11 4.08 -12.48 -0.05 7.06 16 11 O -0.53 -8.08 16.46 5.28 0.09 -8.00 16 12 N -0.60 -7.10 2.98 -173.16 -0.52 -7.62 16 13 C 0.11 1.23 6.23 -3.05 -0.02 1.21 16 14 C -0.13 -1.90 5.52 -26.54 -0.15 -2.05 16 15 C 0.17 2.96 2.57 -67.98 -0.17 2.79 16 16 H 0.02 0.38 7.92 -51.93 -0.41 -0.03 16 17 C -0.12 -1.92 2.86 -89.35 -0.26 -2.17 16 18 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 19 C -0.13 -2.26 6.54 -25.13 -0.16 -2.42 16 20 C 0.18 3.97 5.45 -1.91 -0.01 3.96 16 21 N -0.59 -13.76 3.35 -163.09 -0.55 -14.31 16 22 C -0.23 -5.90 9.86 -15.06 -0.15 -6.04 16 23 H 0.08 1.90 7.18 -52.49 -0.38 1.53 16 24 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 25 N -0.92 -25.86 10.44 55.49 0.58 -25.29 16 26 Si 0.91 21.16 29.55 -169.99 -5.02 16.13 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 30 C 0.12 1.60 5.96 -3.74 -0.02 1.58 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.65 7.18 -51.93 -0.37 0.27 16 33 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.00 6.99 -51.93 -0.36 0.63 16 38 H 0.07 0.75 6.04 -51.93 -0.31 0.44 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.21 7.59 -51.93 -0.39 0.81 16 41 H 0.07 1.07 8.11 -51.93 -0.42 0.64 16 42 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 1.39 7.21 -51.93 -0.37 1.01 16 45 H 0.04 0.96 7.77 -51.93 -0.40 0.55 16 46 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 48 H 0.09 1.21 6.99 -51.93 -0.36 0.85 16 LS Contribution 382.17 15.07 5.76 5.76 Total: -1.00 -31.85 382.17 -9.08 -40.93 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.15 Total: -0.93 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -1.75 Total: 4.33 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.48 Total: -47.21 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.44 Total: -19.01 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.85 -9.08 -40.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036766591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.344 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds