Wall clock time and date at job start Sat Apr 11 2020 07:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35961 * 120.56836 * 2 1 4 4 C 1.40846 * 119.33701 * 180.26708 * 3 2 1 5 5 O 1.21853 * 119.75250 * 179.73288 * 4 3 2 6 6 O 1.34373 * 120.48632 * 359.71801 * 4 3 2 7 7 C 1.33720 * 121.20994 * 359.97438 * 6 4 3 8 8 C 1.50696 * 119.69196 * 180.02562 * 7 6 4 9 9 C 1.37597 * 120.61837 * 0.02562 * 7 6 4 10 10 C 1.47524 * 120.25778 * 179.97438 * 9 7 6 11 11 O 1.21601 * 119.99427 * 90.00129 * 10 9 7 12 12 N 1.34770 * 120.00042 * 269.99784 * 10 9 7 13 13 C 1.46817 * 120.30890 * 0.02562 * 12 10 9 14 14 C 1.52956 * 107.40559 * 235.00442 * 13 12 10 15 15 C 1.53040 * 109.99751 * 298.54473 * 14 13 12 16 16 H 1.09008 * 110.62042 * 289.27798 * 15 14 13 17 17 C 1.51779 * 112.25936 * 52.94962 * 15 14 13 18 18 H 1.08996 * 105.74649 * 207.28200 * 17 15 14 19 19 C 1.53387 * 105.81714 * 95.43635 * 17 15 14 20 20 C 1.54459 * 102.53841 * 29.54222 * 19 17 15 21 21 N 1.46864 * 106.66556 * 332.27192 * 20 19 17 22 22 C 1.36941 * 125.33977 * 195.32762 * 21 20 19 23 23 H 1.08001 * 119.99878 * 162.44038 * 22 21 20 24 24 C 1.38805 * 119.99660 * 342.44634 * 22 21 20 25 25 N 1.31621 * 120.00363 * 329.63464 * 24 22 21 26 26 Si 1.86806 * 119.99893 * 149.63991 * 24 22 21 27 27 H 1.48502 * 109.47092 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47041 * 59.99556 * 26 24 22 29 29 H 1.48502 * 109.46627 * 299.99318 * 26 24 22 30 30 C 1.45268 * 120.15310 * 180.23897 * 12 10 9 31 31 H 1.08995 * 109.47173 * 270.28413 * 1 2 3 32 32 H 1.09001 * 109.46542 * 30.28803 * 1 2 3 33 33 H 1.09000 * 109.46553 * 150.28218 * 1 2 3 34 34 H 1.08005 * 120.32843 * 359.96553 * 3 2 1 35 35 H 1.09006 * 109.47660 * 269.97751 * 8 7 6 36 36 H 1.09001 * 109.47475 * 29.98262 * 8 7 6 37 37 H 1.09001 * 109.47436 * 149.98119 * 8 7 6 38 38 H 1.09000 * 109.87591 * 115.52483 * 13 12 10 39 39 H 1.09004 * 109.87175 * 354.48133 * 13 12 10 40 40 H 1.08996 * 109.38765 * 178.37478 * 14 13 12 41 41 H 1.09000 * 109.38102 * 58.70618 * 14 13 12 42 42 H 1.08998 * 110.79749 * 271.27927 * 19 17 15 43 43 H 1.09001 * 110.79344 * 147.80884 * 19 17 15 44 44 H 1.09001 * 110.02577 * 212.96661 * 20 19 17 45 45 H 1.09004 * 110.05406 * 91.59389 * 20 19 17 46 46 H 0.96998 * 119.99964 * 353.99431 * 25 24 22 47 47 H 1.08999 * 108.84207 * 21.99718 * 30 12 10 48 48 H 1.09001 * 107.98956 * 264.72127 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1707 0.0000 4 6 3.6066 1.1404 -0.0057 5 8 4.2339 2.1851 -0.0107 6 8 4.2633 -0.0319 -0.0054 7 6 3.6042 -1.1954 0.0008 8 6 4.3752 -2.4901 0.0014 9 6 2.2285 -1.2214 0.0065 10 6 1.5094 -2.5095 0.0127 11 8 1.2174 -3.0376 1.0685 12 7 1.1760 -3.1008 -1.1515 13 6 1.5257 -2.4693 -2.4300 14 6 0.2346 -2.3252 -3.2374 15 6 -0.3687 -3.7049 -3.5106 16 1 0.2392 -4.2541 -4.2297 17 6 -0.5442 -4.5173 -2.2406 18 1 -0.4898 -5.5617 -2.5477 19 6 -1.9947 -4.2903 -1.7962 20 6 -2.7209 -4.0414 -3.1365 21 7 -1.7254 -3.4761 -4.0564 22 6 -2.0077 -2.8420 -5.2369 23 1 -1.2620 -2.2171 -5.7059 24 6 -3.2521 -3.0023 -5.8304 25 7 -3.9192 -4.1253 -5.6677 26 14 -3.9802 -1.6243 -6.8602 27 1 -5.3073 -2.0424 -7.3793 28 1 -3.0752 -1.3262 -7.9992 29 1 -4.1369 -0.4091 -6.0211 30 6 0.4633 -4.3666 -1.1492 31 1 -0.3633 0.0051 1.0276 32 1 -0.3632 0.8874 -0.5183 33 1 -0.3632 -0.8925 -0.5095 34 1 1.6732 2.1143 -0.0006 35 1 4.5566 -2.8057 -1.0261 36 1 5.3280 -2.3454 0.5107 37 1 3.7987 -3.2561 0.5202 38 1 2.2334 -3.0967 -2.9719 39 1 1.9623 -1.4867 -2.2508 40 1 0.4532 -1.8319 -4.1844 41 1 -0.4788 -1.7235 -2.6743 42 1 -2.0687 -3.4172 -1.1480 43 1 -2.3906 -5.1765 -1.3002 44 1 -3.5390 -3.3356 -2.9923 45 1 -3.1049 -4.9811 -3.5337 46 1 -3.5060 -4.8724 -5.2074 47 1 -0.0451 -4.4826 -0.1921 48 1 1.1976 -5.1666 -1.2444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036766592.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:26 Heat of formation + Delta-G solvation = -49.365510 kcal Electronic energy + Delta-G solvation = -32129.511614 eV Core-core repulsion = 27958.117001 eV Total energy + Delta-G solvation = -4171.394613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.44359 -40.56418 -38.69295 -38.03408 -36.24061 -35.68821 -33.37629 -32.88230 -31.88206 -29.90538 -29.11952 -28.60345 -28.07565 -25.35019 -24.54226 -23.61403 -22.94211 -22.31489 -20.99582 -20.37725 -18.67107 -18.50397 -17.97624 -17.61133 -17.28580 -16.89858 -16.42223 -15.47823 -15.31509 -14.84438 -14.61318 -14.44181 -14.15884 -14.08838 -13.84069 -13.73222 -13.61803 -13.60632 -13.26277 -13.20248 -12.92803 -12.71929 -12.67037 -12.48841 -12.13128 -12.07089 -11.83426 -11.50250 -11.28127 -10.76581 -10.71984 -10.59477 -10.58608 -10.50858 -10.16911 -10.06271 -10.04189 -9.79878 -9.60232 -8.79059 -8.69065 -8.40297 -7.01607 -6.14877 -3.22193 0.07261 1.03365 1.87831 2.26185 2.74876 2.94112 3.45034 3.49407 3.66816 3.73978 3.90109 4.18088 4.38748 4.49765 4.67804 4.77428 4.79444 4.87192 4.87923 4.99203 5.09747 5.13180 5.16553 5.25582 5.28345 5.31636 5.38060 5.41244 5.49180 5.60927 5.65460 5.75761 5.79602 5.82444 5.85320 5.94968 6.06795 6.08987 6.29253 6.35913 6.48458 6.65200 6.75349 6.82838 6.94991 7.01409 7.16580 7.19992 7.73738 7.88502 8.43058 8.94842 9.74559 10.28854 11.14492 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014045 B = 0.003388 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.064441 B = 8262.993757 C = 9313.167567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 C -0.277 4.277 4 C 0.499 3.501 5 O -0.474 6.474 6 O -0.256 6.256 7 C 0.182 3.818 8 C -0.120 4.120 9 C -0.250 4.250 10 C 0.579 3.421 11 O -0.531 6.531 12 N -0.588 5.588 13 C 0.104 3.896 14 C -0.136 4.136 15 C 0.172 3.828 16 H 0.042 0.958 17 C -0.108 4.108 18 H 0.067 0.933 19 C -0.124 4.124 20 C 0.143 3.857 21 N -0.595 5.595 22 C -0.339 4.339 23 H 0.064 0.936 24 C -0.022 4.022 25 N -0.910 5.910 26 Si 1.059 2.941 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.294 1.294 30 C 0.134 3.866 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.165 0.835 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.040 0.960 45 H 0.030 0.970 46 H 0.269 0.731 47 H 0.088 0.912 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.287 1.984 11.666 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 C -0.297 4.297 4 C 0.352 3.648 5 O -0.364 6.364 6 O -0.165 6.165 7 C 0.133 3.867 8 C -0.176 4.176 9 C -0.254 4.254 10 C 0.365 3.635 11 O -0.408 6.408 12 N -0.320 5.320 13 C -0.019 4.019 14 C -0.176 4.176 15 C 0.065 3.935 16 H 0.060 0.940 17 C -0.128 4.128 18 H 0.086 0.914 19 C -0.163 4.163 20 C 0.017 3.983 21 N -0.320 5.320 22 C -0.466 4.466 23 H 0.082 0.918 24 C -0.225 4.225 25 N -0.551 5.551 26 Si 0.889 3.111 27 H -0.211 1.211 28 H -0.220 1.220 29 H -0.221 1.221 30 C 0.011 3.989 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.182 0.818 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.081 0.919 47 H 0.106 0.894 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.233 2.697 11.238 16.829 hybrid contribution 1.144 -0.345 0.627 1.350 sum 13.378 2.352 11.865 18.036 Atomic orbital electron populations 1.21108 0.88780 1.04956 1.04130 1.20307 0.97680 0.90476 0.85565 1.22256 0.92528 1.00361 1.14519 1.19280 0.88416 0.80688 0.76413 1.91012 1.70865 1.25701 1.48830 1.83393 1.44615 1.14591 1.73902 1.22735 0.90267 0.85608 0.88132 1.21147 1.01503 0.89439 1.05470 1.19791 0.92707 0.95600 1.17313 1.17522 0.79056 0.83097 0.83834 1.90821 1.54711 1.64724 1.30585 1.47707 1.55383 1.22984 1.05925 1.21884 0.98751 0.97689 0.83594 1.22350 0.94860 1.00729 0.99706 1.20425 0.89318 0.92191 0.91575 0.94002 1.20761 0.95225 1.01490 0.95299 0.91409 1.22451 0.94326 1.00760 0.98727 1.21290 0.92299 0.97524 0.87165 1.44773 0.98439 1.67971 1.20820 1.19636 1.02524 1.24451 1.00020 0.91790 1.25684 0.95895 1.00895 1.00005 1.70801 1.42598 1.01658 1.40000 0.83609 0.76449 0.75443 0.75634 1.21128 1.22002 1.22145 1.20367 0.94336 0.83785 1.00413 0.88954 0.89432 0.89934 0.81778 0.87714 0.88440 0.87874 0.90873 0.90550 0.90899 0.91368 0.92166 0.91561 0.94199 0.95234 0.91933 0.89378 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.67 36.01 0.35 -0.99 16 2 C 0.06 0.66 5.80 -104.05 -0.60 0.05 16 3 C -0.28 -3.00 9.65 -39.41 -0.38 -3.38 16 4 C 0.50 6.42 7.93 31.72 0.25 6.67 16 5 O -0.47 -7.53 17.93 -19.60 -0.35 -7.88 16 6 O -0.26 -2.92 9.81 -17.60 -0.17 -3.10 16 7 C 0.18 1.77 7.03 -34.54 -0.24 1.53 16 8 C -0.12 -0.79 9.79 36.00 0.35 -0.43 16 9 C -0.25 -2.75 3.59 -104.96 -0.38 -3.13 16 10 C 0.58 7.15 4.09 -12.48 -0.05 7.10 16 11 O -0.53 -8.07 16.52 5.28 0.09 -7.98 16 12 N -0.59 -6.98 2.99 -177.86 -0.53 -7.51 16 13 C 0.10 1.18 6.34 -3.89 -0.02 1.16 16 14 C -0.14 -2.09 5.18 -26.73 -0.14 -2.23 16 15 C 0.17 3.07 3.41 -67.70 -0.23 2.83 16 16 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 17 C -0.11 -1.61 2.45 -92.86 -0.23 -1.84 16 18 H 0.07 1.00 8.05 -51.93 -0.42 0.58 16 19 C -0.12 -2.04 6.37 -25.76 -0.16 -2.20 16 20 C 0.14 3.10 5.62 -3.08 -0.02 3.08 16 21 N -0.59 -13.65 2.94 -164.00 -0.48 -14.13 16 22 C -0.34 -8.87 9.56 -15.06 -0.14 -9.01 16 23 H 0.06 1.67 7.71 -52.49 -0.40 1.26 16 24 C -0.02 -0.60 5.11 -17.43 -0.09 -0.69 16 25 N -0.91 -26.46 12.97 55.49 0.72 -25.74 16 26 Si 1.06 24.43 30.01 -169.99 -5.10 19.33 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 30 C 0.13 1.66 5.91 -6.53 -0.04 1.62 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 33 H 0.08 0.97 6.88 -51.93 -0.36 0.61 16 34 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.75 6.99 -51.93 -0.36 0.38 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.80 6.20 -51.93 -0.32 0.47 16 40 H 0.07 1.19 7.85 -51.93 -0.41 0.78 16 41 H 0.07 1.15 7.85 -51.93 -0.41 0.74 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.03 0.71 6.31 -51.93 -0.33 0.38 16 46 H 0.27 7.83 6.08 -40.82 -0.25 7.58 16 47 H 0.09 1.16 6.81 -51.93 -0.35 0.80 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -32.67 382.16 -8.90 -41.57 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.05 Total: -0.46 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.78 Total: 0.14 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.29 Total: -47.38 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.44 Total: -18.96 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.10 Total: 19.33 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.67 -8.90 -41.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036766592.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.794 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds