Wall clock time and date at job start Sat Apr 11 2020 07:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35962 * 120.56414 * 2 1 4 4 C 1.40842 * 119.33534 * 180.27180 * 3 2 1 5 5 O 1.21850 * 119.75976 * 179.73948 * 4 3 2 6 6 O 1.34377 * 120.48726 * 359.71663 * 4 3 2 7 7 C 1.33728 * 121.20615 * 0.02562 * 6 4 3 8 8 C 1.50698 * 119.68911 * 180.02562 * 7 6 4 9 9 C 1.37584 * 120.61981 * 359.97438 * 7 6 4 10 10 C 1.47527 * 120.25950 * 180.02562 * 9 7 6 11 11 O 1.21595 * 119.99658 * 89.99951 * 10 9 7 12 12 N 1.34773 * 120.00124 * 270.00615 * 10 9 7 13 13 C 1.45950 * 118.25736 * 359.97438 * 12 10 9 14 14 C 1.53147 * 108.19384 * 148.96399 * 13 12 10 15 15 C 1.52825 * 108.60530 * 61.93532 * 14 13 12 16 16 H 1.09000 * 109.62946 * 62.92173 * 15 14 13 17 17 C 1.51789 * 111.96940 * 301.47763 * 15 14 13 18 18 H 1.09004 * 107.16099 * 142.96873 * 17 15 14 19 19 C 1.54126 * 105.57000 * 256.09546 * 17 15 14 20 20 C 1.54221 * 103.28792 * 334.26485 * 19 17 15 21 21 N 1.46882 * 106.56170 * 27.30293 * 20 19 17 22 22 C 1.36939 * 125.45388 * 161.39165 * 21 20 19 23 23 H 1.08000 * 119.99788 * 179.97438 * 22 21 20 24 24 C 1.38810 * 120.00269 * 359.97252 * 22 21 20 25 25 N 1.31623 * 119.99689 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00348 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47110 * 60.00146 * 26 24 22 28 28 H 1.48498 * 109.47517 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47018 * 300.00494 * 26 24 22 30 30 C 1.44366 * 118.26282 * 180.02562 * 12 10 9 31 31 H 1.09006 * 109.47407 * 270.27670 * 1 2 3 32 32 H 1.08997 * 109.47728 * 30.28115 * 1 2 3 33 33 H 1.09002 * 109.46994 * 150.28335 * 1 2 3 34 34 H 1.07999 * 120.33363 * 359.97396 * 3 2 1 35 35 H 1.08995 * 109.47527 * 269.97664 * 8 7 6 36 36 H 1.09006 * 109.47242 * 29.97893 * 8 7 6 37 37 H 1.09001 * 109.47396 * 149.97577 * 8 7 6 38 38 H 1.08993 * 109.71731 * 29.29110 * 13 12 10 39 39 H 1.08999 * 109.75081 * 268.65599 * 13 12 10 40 40 H 1.08997 * 109.61984 * 302.19872 * 14 13 12 41 41 H 1.09004 * 109.61130 * 181.66814 * 14 13 12 42 42 H 1.09002 * 110.68575 * 215.81079 * 19 17 15 43 43 H 1.09001 * 110.65480 * 92.70412 * 19 17 15 44 44 H 1.09002 * 110.04871 * 268.01168 * 20 19 17 45 45 H 1.09005 * 110.04397 * 146.59328 * 20 19 17 46 46 H 0.97007 * 119.99440 * 179.97438 * 25 24 22 47 47 H 1.09006 * 107.88146 * 296.78766 * 30 12 10 48 48 H 1.08994 * 107.89228 * 52.84586 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6065 1.1405 -0.0058 5 8 4.2338 2.1851 -0.0107 6 8 4.2632 -0.0318 -0.0056 7 6 3.6040 -1.1953 -0.0004 8 6 4.3751 -2.4901 0.0002 9 6 2.2285 -1.2214 0.0054 10 6 1.5093 -2.5095 0.0117 11 8 1.2174 -3.0376 1.0673 12 7 1.1760 -3.1009 -1.1526 13 6 1.5448 -2.4334 -2.3970 14 6 1.8014 -3.5076 -3.4580 15 6 0.5086 -4.2916 -3.6808 16 1 -0.2610 -3.6254 -4.0708 17 6 0.0095 -4.9391 -2.4019 18 1 -1.0788 -4.8786 -2.4142 19 6 0.3637 -6.4337 -2.5294 20 6 0.4165 -6.6566 -4.0545 21 7 0.7740 -5.3644 -4.6543 22 6 1.2737 -5.1858 -5.9167 23 1 1.5067 -4.1920 -6.2696 24 6 1.4806 -6.2819 -6.7429 25 7 1.1961 -7.4930 -6.3129 26 14 2.1614 -6.0383 -8.4652 27 1 3.4969 -5.3939 -8.3829 28 1 2.2888 -7.3558 -9.1382 29 1 1.2406 -5.1712 -9.2434 30 6 0.4723 -4.3604 -1.1026 31 1 -0.3634 0.0050 1.0277 32 1 -0.3634 0.8874 -0.5182 33 1 -0.3633 -0.8925 -0.5094 34 1 1.6731 2.1144 -0.0004 35 1 4.5572 -2.8051 -1.0272 36 1 5.3277 -2.3455 0.5102 37 1 3.7984 -3.2562 0.5184 38 1 2.4488 -1.8440 -2.2443 39 1 0.7321 -1.7833 -2.7211 40 1 2.5841 -4.1832 -3.1129 41 1 2.1079 -3.0346 -4.3909 42 1 -0.4110 -7.0529 -2.0770 43 1 1.3340 -6.6388 -2.0771 44 1 -0.5583 -6.9807 -4.4187 45 1 1.1729 -7.4032 -4.2969 46 1 1.3403 -8.2590 -6.8904 47 1 1.1263 -5.0905 -0.6257 48 1 -0.4008 -4.2310 -0.4633 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036766593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:29 Heat of formation + Delta-G solvation = -45.889109 kcal Electronic energy + Delta-G solvation = -31832.139211 eV Core-core repulsion = 27660.895347 eV Total energy + Delta-G solvation = -4171.243865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44462 -40.57487 -38.60824 -38.02838 -36.25258 -35.60648 -33.33247 -32.78321 -31.85449 -29.94262 -29.18158 -28.64065 -27.95154 -25.36075 -24.68022 -23.48615 -22.88558 -22.34921 -20.90239 -20.34731 -18.68216 -18.21508 -17.97131 -17.28244 -17.11060 -16.88000 -16.29354 -15.68177 -15.34357 -14.97447 -14.75536 -14.43259 -14.19247 -14.05960 -13.86271 -13.83174 -13.55413 -13.54633 -13.14946 -12.85891 -12.77459 -12.65191 -12.60578 -12.42525 -12.11204 -11.90331 -11.54211 -11.42637 -11.17136 -10.91963 -10.82956 -10.81510 -10.58980 -10.37758 -10.20839 -10.07018 -9.92404 -9.71317 -9.63237 -8.72051 -8.69688 -8.60941 -6.95291 -5.76217 -3.16054 0.07073 1.03578 1.89173 2.29226 2.76796 2.95782 3.33820 3.38745 3.40011 3.75776 3.89313 4.18806 4.36482 4.40508 4.66954 4.83176 4.87621 4.95880 5.00044 5.02143 5.07427 5.14549 5.15298 5.24607 5.28246 5.34441 5.43051 5.45574 5.52742 5.69520 5.72916 5.76515 5.79729 5.93040 5.95848 6.08970 6.14642 6.27940 6.44902 6.52782 6.58644 6.72654 6.76407 6.89628 7.17445 7.21514 7.44632 7.54718 7.76630 7.92510 8.24210 9.13101 9.73638 10.37116 11.29652 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.003116 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.048018 B = 8982.984317 C = 9894.251396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.060 3.940 3 C -0.278 4.278 4 C 0.499 3.501 5 O -0.475 6.475 6 O -0.255 6.255 7 C 0.189 3.811 8 C -0.123 4.123 9 C -0.254 4.254 10 C 0.571 3.429 11 O -0.530 6.530 12 N -0.583 5.583 13 C 0.106 3.894 14 C -0.136 4.136 15 C 0.174 3.826 16 H 0.033 0.967 17 C -0.102 4.102 18 H 0.066 0.934 19 C -0.135 4.135 20 C 0.160 3.840 21 N -0.595 5.595 22 C -0.226 4.226 23 H 0.077 0.923 24 C -0.007 4.007 25 N -0.921 5.921 26 Si 0.912 3.088 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.140 3.860 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.164 0.836 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.016 0.984 45 H 0.093 0.907 46 H 0.253 0.747 47 H 0.063 0.937 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.053 10.488 13.116 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.058 3.942 3 C -0.298 4.298 4 C 0.351 3.649 5 O -0.365 6.365 6 O -0.164 6.164 7 C 0.139 3.861 8 C -0.179 4.179 9 C -0.258 4.258 10 C 0.357 3.643 11 O -0.407 6.407 12 N -0.315 5.315 13 C -0.017 4.017 14 C -0.176 4.176 15 C 0.067 3.933 16 H 0.050 0.950 17 C -0.122 4.122 18 H 0.084 0.916 19 C -0.173 4.173 20 C 0.035 3.965 21 N -0.320 5.320 22 C -0.354 4.354 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.568 5.568 26 Si 0.743 3.257 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.017 3.983 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.181 0.819 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.111 0.889 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.310 10.522 13.418 17.054 hybrid contribution 0.061 0.258 -1.030 1.064 sum 0.371 10.779 12.388 16.425 Atomic orbital electron populations 1.21062 0.89036 1.04426 1.04161 1.20261 0.97507 0.90534 0.85849 1.22221 0.92583 1.00233 1.14736 1.19277 0.88432 0.80729 0.76420 1.91011 1.70878 1.25748 1.48815 1.83413 1.44606 1.14587 1.73762 1.22798 0.90336 0.85597 0.87391 1.21202 1.01544 0.89295 1.05844 1.19778 0.92720 0.95566 1.17733 1.17578 0.79427 0.83321 0.83986 1.90822 1.54460 1.64668 1.30749 1.47318 1.55909 1.22183 1.06043 1.21721 1.00018 0.95854 0.84107 1.22300 1.01033 0.96863 0.97392 1.20234 0.93630 0.90998 0.88484 0.94988 1.20881 1.00792 0.97306 0.93186 0.91586 1.22864 1.00291 0.93098 1.01091 1.21489 1.00004 0.89669 0.85348 1.44488 1.75198 1.00619 1.11657 1.18943 1.35268 0.93209 0.88029 0.90493 1.24785 1.01552 0.95349 0.98611 1.69874 1.53713 0.97513 1.35711 0.86199 0.78843 0.76747 0.83959 1.21125 1.21574 1.21181 1.20133 0.96546 0.83934 0.97665 0.88950 0.89602 0.90254 0.81873 0.87354 0.88348 0.87765 0.91155 0.91553 0.91143 0.90307 0.91991 0.92244 0.96621 0.88880 0.93633 0.91836 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 9.67 36.01 0.35 -0.66 16 2 C 0.06 0.58 5.93 -104.06 -0.62 -0.04 16 3 C -0.28 -2.78 9.65 -39.41 -0.38 -3.16 16 4 C 0.50 6.30 7.93 31.72 0.25 6.55 16 5 O -0.47 -7.44 17.93 -19.60 -0.35 -7.79 16 6 O -0.25 -2.98 9.81 -17.63 -0.17 -3.16 16 7 C 0.19 1.93 6.47 -34.55 -0.22 1.71 16 8 C -0.12 -0.98 9.80 36.00 0.35 -0.63 16 9 C -0.25 -2.75 3.80 -104.97 -0.40 -3.15 16 10 C 0.57 7.09 4.02 -12.48 -0.05 7.04 16 11 O -0.53 -8.10 16.85 5.28 0.09 -8.01 16 12 N -0.58 -7.16 3.14 -179.00 -0.56 -7.72 16 13 C 0.11 1.25 5.97 -4.26 -0.03 1.22 16 14 C -0.14 -2.07 5.21 -26.74 -0.14 -2.21 16 15 C 0.17 3.11 3.20 -68.21 -0.22 2.90 16 16 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.10 -1.57 2.74 -92.34 -0.25 -1.82 16 18 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 19 C -0.13 -2.28 6.39 -25.50 -0.16 -2.44 16 20 C 0.16 3.58 5.67 -3.20 -0.02 3.56 16 21 N -0.60 -13.69 3.14 -164.82 -0.52 -14.21 16 22 C -0.23 -5.77 9.67 -15.06 -0.15 -5.92 16 23 H 0.08 1.88 7.49 -52.49 -0.39 1.49 16 24 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 25 N -0.92 -25.53 10.17 55.49 0.56 -24.97 16 26 Si 0.91 21.00 29.55 -169.99 -5.02 15.98 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 30 C 0.14 1.86 5.19 -6.88 -0.04 1.82 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.08 0.69 7.18 -51.93 -0.37 0.32 16 34 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.91 6.99 -51.93 -0.36 0.55 16 38 H 0.07 0.74 6.27 -51.93 -0.33 0.41 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.26 7.63 -51.93 -0.40 0.87 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.98 7.69 -51.93 -0.40 0.58 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 2.38 6.19 -51.93 -0.32 2.06 16 46 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 47 H 0.06 0.87 7.33 -51.93 -0.38 0.49 16 48 H 0.06 0.83 7.95 -51.93 -0.41 0.41 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -31.28 381.13 -9.19 -40.47 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.15 Total: -0.83 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -1.81 Total: 4.49 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.51 Total: -46.90 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.44 Total: -18.96 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.28 -9.19 -40.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036766593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.418 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds