Wall clock time and date at job start Sat Apr 11 2020 07:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35962 * 120.56414 * 2 1 4 4 C 1.40842 * 119.33534 * 180.27180 * 3 2 1 5 5 O 1.21850 * 119.75976 * 179.73948 * 4 3 2 6 6 O 1.34377 * 120.48726 * 359.71663 * 4 3 2 7 7 C 1.33728 * 121.20615 * 0.02562 * 6 4 3 8 8 C 1.50698 * 119.68911 * 180.02562 * 7 6 4 9 9 C 1.37584 * 120.61981 * 359.97438 * 7 6 4 10 10 C 1.47527 * 120.25950 * 180.02562 * 9 7 6 11 11 O 1.21595 * 119.99658 * 89.99951 * 10 9 7 12 12 N 1.34773 * 120.00124 * 270.00615 * 10 9 7 13 13 C 1.45950 * 118.25736 * 359.97438 * 12 10 9 14 14 C 1.53147 * 108.19384 * 148.96399 * 13 12 10 15 15 C 1.52825 * 108.60530 * 61.93532 * 14 13 12 16 16 H 1.09000 * 109.62946 * 62.92173 * 15 14 13 17 17 C 1.51789 * 111.96940 * 301.47763 * 15 14 13 18 18 H 1.09004 * 107.16099 * 142.96873 * 17 15 14 19 19 C 1.54126 * 105.57000 * 256.09546 * 17 15 14 20 20 C 1.54221 * 103.28792 * 334.26485 * 19 17 15 21 21 N 1.46882 * 106.56170 * 27.30293 * 20 19 17 22 22 C 1.36939 * 125.45388 * 161.39165 * 21 20 19 23 23 H 1.08000 * 119.99788 * 179.97438 * 22 21 20 24 24 C 1.38810 * 120.00269 * 359.97252 * 22 21 20 25 25 N 1.31623 * 119.99689 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00348 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47110 * 60.00146 * 26 24 22 28 28 H 1.48498 * 109.47517 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47018 * 300.00494 * 26 24 22 30 30 C 1.44366 * 118.26282 * 180.02562 * 12 10 9 31 31 H 1.09006 * 109.47407 * 270.27670 * 1 2 3 32 32 H 1.08997 * 109.47728 * 30.28115 * 1 2 3 33 33 H 1.09002 * 109.46994 * 150.28335 * 1 2 3 34 34 H 1.07999 * 120.33363 * 359.97396 * 3 2 1 35 35 H 1.08995 * 109.47527 * 269.97664 * 8 7 6 36 36 H 1.09006 * 109.47242 * 29.97893 * 8 7 6 37 37 H 1.09001 * 109.47396 * 149.97577 * 8 7 6 38 38 H 1.08993 * 109.71731 * 29.29110 * 13 12 10 39 39 H 1.08999 * 109.75081 * 268.65599 * 13 12 10 40 40 H 1.08997 * 109.61984 * 302.19872 * 14 13 12 41 41 H 1.09004 * 109.61130 * 181.66814 * 14 13 12 42 42 H 1.09002 * 110.68575 * 215.81079 * 19 17 15 43 43 H 1.09001 * 110.65480 * 92.70412 * 19 17 15 44 44 H 1.09002 * 110.04871 * 268.01168 * 20 19 17 45 45 H 1.09005 * 110.04397 * 146.59328 * 20 19 17 46 46 H 0.97007 * 119.99440 * 179.97438 * 25 24 22 47 47 H 1.09006 * 107.88146 * 296.78766 * 30 12 10 48 48 H 1.08994 * 107.89228 * 52.84586 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6065 1.1405 -0.0058 5 8 4.2338 2.1851 -0.0107 6 8 4.2632 -0.0318 -0.0056 7 6 3.6040 -1.1953 -0.0004 8 6 4.3751 -2.4901 0.0002 9 6 2.2285 -1.2214 0.0054 10 6 1.5093 -2.5095 0.0117 11 8 1.2174 -3.0376 1.0673 12 7 1.1760 -3.1009 -1.1526 13 6 1.5448 -2.4334 -2.3970 14 6 1.8014 -3.5076 -3.4580 15 6 0.5086 -4.2916 -3.6808 16 1 -0.2610 -3.6254 -4.0708 17 6 0.0095 -4.9391 -2.4019 18 1 -1.0788 -4.8786 -2.4142 19 6 0.3637 -6.4337 -2.5294 20 6 0.4165 -6.6566 -4.0545 21 7 0.7740 -5.3644 -4.6543 22 6 1.2737 -5.1858 -5.9167 23 1 1.5067 -4.1920 -6.2696 24 6 1.4806 -6.2819 -6.7429 25 7 1.1961 -7.4930 -6.3129 26 14 2.1614 -6.0383 -8.4652 27 1 3.4969 -5.3939 -8.3829 28 1 2.2888 -7.3558 -9.1382 29 1 1.2406 -5.1712 -9.2434 30 6 0.4723 -4.3604 -1.1026 31 1 -0.3634 0.0050 1.0277 32 1 -0.3634 0.8874 -0.5182 33 1 -0.3633 -0.8925 -0.5094 34 1 1.6731 2.1144 -0.0004 35 1 4.5572 -2.8051 -1.0272 36 1 5.3277 -2.3455 0.5102 37 1 3.7984 -3.2562 0.5184 38 1 2.4488 -1.8440 -2.2443 39 1 0.7321 -1.7833 -2.7211 40 1 2.5841 -4.1832 -3.1129 41 1 2.1079 -3.0346 -4.3909 42 1 -0.4110 -7.0529 -2.0770 43 1 1.3340 -6.6388 -2.0771 44 1 -0.5583 -6.9807 -4.4187 45 1 1.1729 -7.4032 -4.2969 46 1 1.3403 -8.2590 -6.8904 47 1 1.1263 -5.0905 -0.6257 48 1 -0.4008 -4.2310 -0.4633 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036766593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:28 Heat of formation + Delta-G solvation = -62.915663 kcal Electronic energy + Delta-G solvation = -31832.877538 eV Core-core repulsion = 27660.895347 eV Total energy + Delta-G solvation = -4171.982191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.33611 -41.66705 -39.90501 -39.04968 -37.07873 -36.91428 -34.70992 -33.87398 -33.22991 -31.45612 -30.01954 -29.84545 -28.93295 -26.85604 -25.84909 -24.72829 -24.11140 -23.10329 -22.21737 -21.81059 -19.58057 -19.25656 -19.12838 -18.90104 -18.18631 -17.82650 -17.32689 -16.88566 -16.79517 -16.35344 -16.05809 -15.57558 -15.22367 -14.99916 -14.92832 -14.57134 -14.49945 -14.45191 -14.38217 -14.13407 -13.84412 -13.75969 -13.47548 -13.42527 -13.35835 -13.08905 -13.00364 -12.79120 -12.58864 -12.55899 -12.40121 -12.03048 -11.83078 -11.61809 -11.55966 -11.50225 -11.30641 -11.18371 -11.05605 -10.65405 -9.70105 -9.51078 -8.84324 -7.75332 -5.15613 -0.71768 0.15405 1.01497 1.32868 1.49484 1.50781 1.56959 1.80852 2.05696 2.51820 2.96363 3.08648 3.33816 3.37086 3.55368 3.63840 3.72757 3.80167 3.94476 3.98206 4.04666 4.17027 4.24457 4.34295 4.40052 4.45385 4.50562 4.55830 4.60929 4.63835 4.71693 4.74958 4.76564 4.86566 4.92525 4.92807 5.03895 5.10381 5.14180 5.16127 5.34880 5.50252 5.53045 5.57606 5.70687 5.87085 5.89131 6.17938 6.27690 6.32790 6.92782 7.16110 7.84874 8.46785 9.29031 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.003116 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.048018 B = 8982.984317 C = 9894.251396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.069 3.931 3 C -0.278 4.278 4 C 0.493 3.507 5 O -0.517 6.517 6 O -0.260 6.260 7 C 0.194 3.806 8 C -0.124 4.124 9 C -0.265 4.265 10 C 0.583 3.417 11 O -0.556 6.556 12 N -0.581 5.581 13 C 0.116 3.884 14 C -0.125 4.125 15 C 0.166 3.834 16 H 0.031 0.969 17 C -0.089 4.089 18 H 0.074 0.926 19 C -0.121 4.121 20 C 0.163 3.837 21 N -0.615 5.615 22 C -0.226 4.226 23 H 0.085 0.915 24 C -0.067 4.067 25 N -0.951 5.951 26 Si 0.971 3.029 27 H -0.276 1.276 28 H -0.300 1.300 29 H -0.280 1.280 30 C 0.147 3.853 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.183 0.817 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.065 0.935 44 H -0.017 1.017 45 H 0.056 0.944 46 H 0.244 0.756 47 H 0.063 0.937 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 12.201 14.202 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.067 3.933 3 C -0.297 4.297 4 C 0.348 3.652 5 O -0.410 6.410 6 O -0.169 6.169 7 C 0.144 3.856 8 C -0.180 4.180 9 C -0.269 4.269 10 C 0.370 3.630 11 O -0.435 6.435 12 N -0.312 5.312 13 C -0.006 4.006 14 C -0.165 4.165 15 C 0.060 3.940 16 H 0.049 0.951 17 C -0.109 4.109 18 H 0.093 0.907 19 C -0.160 4.160 20 C 0.038 3.962 21 N -0.340 5.340 22 C -0.355 4.355 23 H 0.103 0.897 24 C -0.259 4.259 25 N -0.601 5.601 26 Si 0.800 3.200 27 H -0.202 1.202 28 H -0.226 1.226 29 H -0.207 1.207 30 C 0.024 3.976 31 H 0.118 0.882 32 H 0.128 0.872 33 H 0.091 0.909 34 H 0.200 0.800 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.001 0.999 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.081 0.919 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.028 12.264 14.520 19.006 hybrid contribution 0.141 -0.315 -1.354 1.397 sum 0.113 11.949 13.166 17.780 Atomic orbital electron populations 1.21151 0.87351 1.05263 1.04888 1.20450 0.98583 0.89737 0.84526 1.22267 0.91105 1.01269 1.15032 1.19670 0.89270 0.80391 0.75848 1.90988 1.71737 1.27140 1.51132 1.83392 1.45066 1.14903 1.73505 1.23147 0.90496 0.85640 0.86306 1.21321 1.02083 0.87869 1.06681 1.19767 0.92989 0.95315 1.18836 1.17579 0.78740 0.83342 0.83295 1.90820 1.55590 1.65486 1.31639 1.47263 1.55721 1.21902 1.06286 1.21676 1.01586 0.94720 0.82629 1.22076 0.98923 0.97208 0.98269 1.20482 0.94915 0.90113 0.88502 0.95096 1.20763 1.01300 0.95828 0.92980 0.90712 1.22703 1.01579 0.94853 0.96825 1.21238 0.96895 0.89019 0.89049 1.44764 1.74943 1.02280 1.11980 1.19325 1.33690 0.93363 0.89133 0.89704 1.25538 1.02984 0.95342 1.02045 1.70123 1.55565 0.97954 1.36428 0.85255 0.78529 0.76058 0.80123 1.20228 1.22619 1.20651 1.19972 0.97132 0.84363 0.96125 0.88178 0.87248 0.90897 0.79952 0.86237 0.86582 0.88246 0.89310 0.89878 0.92380 0.91143 0.89763 0.91631 0.99882 0.92579 0.94655 0.91888 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.67 71.24 0.69 -0.86 16 2 C 0.07 1.12 5.93 -19.50 -0.12 1.00 16 3 C -0.28 -4.86 9.65 22.38 0.22 -4.65 16 4 C 0.49 11.78 7.93 68.46 0.54 12.32 16 5 O -0.52 -15.98 17.93 18.74 0.34 -15.64 16 6 O -0.26 -5.67 9.81 25.78 0.25 -5.41 16 7 C 0.19 3.51 6.47 25.53 0.17 3.68 16 8 C -0.12 -1.68 9.80 71.24 0.70 -0.99 16 9 C -0.26 -5.02 3.80 -20.09 -0.08 -5.09 16 10 C 0.58 12.81 4.02 86.69 0.35 13.16 16 11 O -0.56 -15.59 16.85 -4.02 -0.07 -15.65 16 12 N -0.58 -12.51 3.14 -838.49 -2.63 -15.14 16 13 C 0.12 2.38 5.97 86.53 0.52 2.89 16 14 C -0.12 -3.58 5.21 30.59 0.16 -3.42 16 15 C 0.17 5.71 3.20 44.39 0.14 5.85 16 16 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 17 C -0.09 -2.55 2.74 -11.91 -0.03 -2.59 16 18 H 0.07 2.04 8.11 -2.38 -0.02 2.02 16 19 C -0.12 -3.97 6.39 31.39 0.20 -3.77 16 20 C 0.16 7.51 5.67 86.72 0.49 8.00 16 21 N -0.62 -28.48 3.14 -675.37 -2.12 -30.60 16 22 C -0.23 -11.61 9.67 84.03 0.81 -10.80 16 23 H 0.09 4.11 7.49 -2.91 -0.02 4.09 16 24 C -0.07 -3.59 5.48 84.86 0.47 -3.12 16 25 N -0.95 -54.76 10.17 21.65 0.22 -54.54 16 26 Si 0.97 43.75 29.55 68.60 2.03 45.78 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 28 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 29 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 30 C 0.15 3.49 5.19 85.68 0.45 3.93 16 31 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.11 0.80 8.09 -2.39 -0.02 0.78 16 33 H 0.07 1.00 7.18 -2.39 -0.02 0.98 16 34 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 35 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.12 1.17 8.14 -2.38 -0.02 1.16 16 37 H 0.10 1.52 6.99 -2.39 -0.02 1.50 16 38 H 0.09 1.55 6.27 -2.39 -0.01 1.53 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 2.15 7.63 -2.39 -0.02 2.13 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.07 2.08 7.69 -2.39 -0.02 2.06 16 44 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 45 H 0.06 3.00 6.19 -2.38 -0.01 2.98 16 46 H 0.24 13.86 8.31 -92.70 -0.77 13.09 16 47 H 0.06 1.55 7.33 -2.38 -0.02 1.53 16 48 H 0.08 1.69 7.95 -2.39 -0.02 1.67 16 Total: -1.00 -70.01 381.13 4.66 -65.35 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.97 Total: 10.30 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 5.67 Total: 15.57 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -4.53 Total: -100.28 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: 0.52 Total: -36.71 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -70.01 4.66 -65.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036766593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.431 kcal (2) G-P(sol) polarization free energy of solvation -70.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds