Wall clock time and date at job start Sat Apr 11 2020 07:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35967 * 120.56527 * 2 1 4 4 C 1.40842 * 119.33521 * 179.97438 * 3 2 1 5 5 O 1.21859 * 119.75475 * 180.02562 * 4 3 2 6 6 O 1.34380 * 120.49134 * 359.97438 * 4 3 2 7 7 C 1.33726 * 121.20293 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.68891 * 180.02562 * 7 6 4 9 9 C 1.37593 * 120.62105 * 0.28353 * 7 6 4 10 10 C 1.47521 * 120.25747 * 179.70259 * 9 7 6 11 11 O 1.21592 * 120.00122 * 89.99424 * 10 9 7 12 12 N 1.34778 * 119.99849 * 269.99612 * 10 9 7 13 13 C 1.46595 * 119.68280 * 359.73098 * 12 10 9 14 14 C 1.54380 * 110.35206 * 132.09942 * 13 12 10 15 15 C 1.51516 * 107.26305 * 51.31391 * 14 13 12 16 16 H 1.08994 * 108.81812 * 53.30315 * 15 14 13 17 17 C 1.55370 * 107.78304 * 294.99640 * 15 14 13 18 18 H 1.08993 * 112.27347 * 309.15990 * 17 15 14 19 19 C 1.53746 * 100.22282 * 190.94018 * 17 15 14 20 20 C 1.55289 * 101.84087 * 39.09227 * 19 17 15 21 21 N 1.45467 * 117.33935 * 177.96347 * 15 14 13 22 22 C 1.36942 * 126.40609 * 329.35325 * 21 15 14 23 23 H 1.07999 * 119.99838 * 359.96765 * 22 21 15 24 24 C 1.38809 * 120.00234 * 179.97438 * 22 21 15 25 25 N 1.31621 * 120.00055 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00300 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.46756 * 359.97438 * 26 24 22 28 28 H 1.48491 * 109.47258 * 119.99703 * 26 24 22 29 29 H 1.48501 * 109.47231 * 240.00274 * 26 24 22 30 30 C 1.47717 * 119.68473 * 179.97438 * 12 10 9 31 31 H 1.08994 * 109.47456 * 89.99851 * 1 2 3 32 32 H 1.09004 * 109.46691 * 210.00001 * 1 2 3 33 33 H 1.09003 * 109.47203 * 329.99506 * 1 2 3 34 34 H 1.07999 * 120.33159 * 0.02562 * 3 2 1 35 35 H 1.09002 * 109.47152 * 0.02562 * 8 7 6 36 36 H 1.09001 * 109.46980 * 240.00342 * 8 7 6 37 37 H 1.09004 * 109.47113 * 120.00323 * 8 7 6 38 38 H 1.08996 * 109.25338 * 252.46439 * 13 12 10 39 39 H 1.08995 * 109.25862 * 11.89976 * 13 12 10 40 40 H 1.09001 * 110.03855 * 291.81186 * 14 13 12 41 41 H 1.08993 * 109.80063 * 170.68576 * 14 13 12 42 42 H 1.08996 * 110.94996 * 157.23153 * 19 17 15 43 43 H 1.09000 * 110.95450 * 280.95648 * 19 17 15 44 44 H 1.09001 * 109.91602 * 96.86801 * 20 19 17 45 45 H 1.08997 * 109.91827 * 218.17062 * 20 19 17 46 46 H 0.97005 * 120.00407 * 180.02562 * 25 24 22 47 47 H 1.09003 * 110.07189 * 351.26756 * 30 12 10 48 48 H 1.08998 * 110.06871 * 112.84581 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6065 1.1405 0.0005 5 8 4.2338 2.1852 0.0010 6 8 4.2633 -0.0318 0.0016 7 6 3.6041 -1.1953 0.0016 8 6 4.3752 -2.4901 0.0034 9 6 2.2285 -1.2214 -0.0053 10 6 1.5094 -2.5095 -0.0118 11 8 1.2079 -3.0428 1.0385 12 7 1.1867 -3.0951 -1.1820 13 6 1.5484 -2.4431 -2.4442 14 6 2.2168 -3.4553 -3.3991 15 6 1.3073 -4.6644 -3.4811 16 1 0.3049 -4.3326 -3.7514 17 6 1.2656 -5.3231 -2.0746 18 1 2.2627 -5.4986 -1.6709 19 6 0.5594 -6.6460 -2.4136 20 6 1.1970 -7.0057 -3.7831 21 7 1.7106 -5.7449 -4.3676 22 6 2.4306 -5.6202 -5.5258 23 1 2.7544 -4.6449 -5.8579 24 6 2.7440 -6.7472 -6.2730 25 7 2.3489 -7.9358 -5.8686 26 14 3.7255 -6.5770 -7.8532 27 1 4.0446 -5.1454 -8.0859 28 1 4.9861 -7.3534 -7.7391 29 1 2.9253 -7.0965 -8.9913 30 6 0.4672 -4.3852 -1.1805 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.6731 2.1144 0.0004 35 1 5.4441 -2.2764 0.0049 36 1 4.1207 -3.0657 -0.8866 37 1 4.1186 -3.0646 0.8935 38 1 0.6493 -2.0422 -2.9121 39 1 2.2419 -1.6270 -2.2414 40 1 3.1909 -3.7500 -3.0087 41 1 2.3318 -3.0102 -4.3873 42 1 0.7818 -7.4088 -1.6676 43 1 -0.5164 -6.4997 -2.5109 44 1 2.0171 -7.7088 -3.6375 45 1 0.4440 -7.4402 -4.4406 46 1 2.5683 -8.7235 -6.3905 47 1 0.4186 -4.7853 -0.1677 48 1 -0.5382 -4.2532 -1.5803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036766594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:32 Heat of formation + Delta-G solvation = -46.446622 kcal Electronic energy + Delta-G solvation = -31896.911388 eV Core-core repulsion = 27725.643348 eV Total energy + Delta-G solvation = -4171.268040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.42984 -40.44416 -38.57730 -38.01886 -36.23770 -35.51481 -33.23305 -32.64461 -31.70746 -29.90307 -29.18673 -28.57097 -27.83505 -25.21360 -24.61293 -23.44561 -22.53666 -22.35180 -20.73228 -20.13007 -19.55376 -18.59310 -17.94834 -17.26918 -16.89797 -16.50746 -16.25228 -15.43980 -15.15740 -14.97260 -14.47999 -14.41663 -14.13553 -14.05745 -13.94756 -13.86344 -13.69222 -13.50276 -13.11223 -13.00809 -12.74433 -12.67611 -12.61328 -12.54448 -12.10868 -11.79123 -11.60147 -11.53683 -10.98572 -10.89212 -10.88780 -10.77986 -10.59098 -10.28663 -10.16737 -10.03726 -9.93537 -9.72512 -9.60046 -8.75283 -8.70796 -8.65400 -6.92930 -5.79894 -3.13630 0.07477 1.03341 1.89656 2.32529 2.74848 2.93263 3.33824 3.39488 3.42013 3.76998 3.88750 4.18785 4.36777 4.42127 4.67419 4.84856 4.85867 4.90484 5.01563 5.03793 5.12315 5.12793 5.19836 5.29261 5.33012 5.40009 5.46337 5.47141 5.55338 5.66095 5.70877 5.75517 5.76876 5.88059 6.00653 6.04446 6.09956 6.20847 6.34378 6.47524 6.51565 6.68533 6.77269 6.92769 7.17708 7.22224 7.47034 7.52682 7.73026 7.91814 8.15607 9.10815 9.74475 10.41512 11.32470 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.003201 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.967466 B = 8744.770529 C = 9782.138752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.060 3.940 3 C -0.279 4.279 4 C 0.498 3.502 5 O -0.475 6.475 6 O -0.254 6.254 7 C 0.192 3.808 8 C -0.125 4.125 9 C -0.258 4.258 10 C 0.578 3.422 11 O -0.532 6.532 12 N -0.594 5.594 13 C 0.110 3.890 14 C -0.129 4.129 15 C 0.169 3.831 16 H 0.020 0.980 17 C -0.124 4.124 18 H 0.080 0.920 19 C -0.136 4.136 20 C 0.177 3.823 21 N -0.594 5.594 22 C -0.228 4.228 23 H 0.079 0.921 24 C -0.006 4.006 25 N -0.920 5.920 26 Si 0.909 3.091 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.290 1.290 30 C 0.125 3.875 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.038 0.962 46 H 0.252 0.748 47 H 0.092 0.908 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 11.956 12.047 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 C -0.299 4.299 4 C 0.351 3.649 5 O -0.365 6.365 6 O -0.163 6.163 7 C 0.142 3.858 8 C -0.181 4.181 9 C -0.262 4.262 10 C 0.364 3.636 11 O -0.410 6.410 12 N -0.326 5.326 13 C -0.014 4.014 14 C -0.169 4.169 15 C 0.060 3.940 16 H 0.038 0.962 17 C -0.144 4.144 18 H 0.099 0.901 19 C -0.175 4.175 20 C 0.053 3.947 21 N -0.319 5.319 22 C -0.356 4.356 23 H 0.097 0.903 24 C -0.203 4.203 25 N -0.567 5.567 26 Si 0.739 3.261 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.217 1.217 30 C 0.004 3.996 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.181 0.819 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.111 0.889 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.173 12.041 12.379 17.558 hybrid contribution 0.380 0.169 -1.019 1.101 sum -2.792 12.210 11.360 16.910 Atomic orbital electron populations 1.21065 0.89061 1.04601 1.04042 1.20261 0.97493 0.90532 0.85890 1.22220 0.92589 1.00224 1.14845 1.19286 0.88442 0.80758 0.76431 1.91012 1.70893 1.25771 1.48803 1.83435 1.44602 1.14605 1.73670 1.22836 0.90351 0.85585 0.87071 1.21229 1.01553 0.89344 1.05931 1.19779 0.92756 0.95670 1.18032 1.17567 0.78826 0.83171 0.84022 1.90811 1.54645 1.64324 1.31191 1.48335 1.56227 1.22576 1.05506 1.21910 1.00105 0.95398 0.83955 1.21988 0.99670 0.96430 0.98769 1.20615 0.95278 0.89122 0.88968 0.96239 1.22633 0.99604 0.95602 0.96602 0.90134 1.22719 0.99077 0.95660 1.00011 1.21536 0.96878 0.88304 0.88008 1.44209 1.63362 1.01099 1.23216 1.19020 1.26327 0.93375 0.96884 0.90333 1.24788 1.00962 0.95388 0.99129 1.69943 1.50152 0.97351 1.39258 0.86097 0.79481 0.77307 0.83174 1.20514 1.21757 1.21748 1.21714 0.94725 0.81399 1.01770 0.88996 0.90020 0.89723 0.81909 0.88499 0.87321 0.87387 0.91224 0.90751 0.91341 0.90342 0.91976 0.92287 0.92675 0.94337 0.93746 0.88948 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 9.67 36.00 0.35 -0.62 16 2 C 0.06 0.57 5.93 -104.06 -0.62 -0.05 16 3 C -0.28 -2.77 9.64 -39.41 -0.38 -3.15 16 4 C 0.50 6.32 7.93 31.72 0.25 6.57 16 5 O -0.47 -7.48 17.93 -19.60 -0.35 -7.83 16 6 O -0.25 -3.03 9.80 -17.63 -0.17 -3.20 16 7 C 0.19 2.00 6.74 -34.54 -0.23 1.76 16 8 C -0.12 -1.06 9.20 36.01 0.33 -0.73 16 9 C -0.26 -2.78 3.62 -104.97 -0.38 -3.16 16 10 C 0.58 7.07 4.68 -12.48 -0.06 7.01 16 11 O -0.53 -8.05 16.46 5.28 0.09 -7.97 16 12 N -0.59 -7.04 2.99 -173.48 -0.52 -7.56 16 13 C 0.11 1.23 6.25 -3.27 -0.02 1.21 16 14 C -0.13 -1.89 5.50 -26.76 -0.15 -2.04 16 15 C 0.17 2.98 2.57 -67.98 -0.17 2.81 16 16 H 0.02 0.37 7.92 -51.93 -0.41 -0.04 16 17 C -0.12 -1.91 2.85 -89.38 -0.26 -2.16 16 18 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 19 C -0.14 -2.26 6.54 -25.13 -0.16 -2.43 16 20 C 0.18 3.96 5.45 -1.92 -0.01 3.95 16 21 N -0.59 -13.72 3.35 -163.09 -0.55 -14.27 16 22 C -0.23 -5.85 9.88 -15.06 -0.15 -6.00 16 23 H 0.08 1.94 7.21 -52.49 -0.38 1.56 16 24 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 25 N -0.92 -25.81 10.44 55.49 0.58 -25.23 16 26 Si 0.91 21.14 29.55 -169.99 -5.02 16.12 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 30 C 0.13 1.60 5.95 -3.78 -0.02 1.57 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.71 7.19 -51.93 -0.37 0.34 16 33 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.16 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.10 0.68 8.13 -51.93 -0.42 0.25 16 36 H 0.11 0.96 8.12 -51.93 -0.42 0.54 16 37 H 0.11 0.90 8.13 -51.93 -0.42 0.48 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.75 6.05 -51.93 -0.31 0.43 16 40 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 41 H 0.08 1.20 7.62 -51.93 -0.40 0.80 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 44 H 0.06 1.39 7.21 -51.93 -0.37 1.01 16 45 H 0.04 0.96 7.77 -51.93 -0.40 0.56 16 46 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 47 H 0.09 1.21 6.99 -51.93 -0.36 0.84 16 48 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 LS Contribution 383.43 15.07 5.78 5.78 Total: -1.00 -31.84 383.43 -9.16 -41.00 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.21 Total: -1.13 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -1.78 Total: 4.28 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.49 Total: -47.05 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.44 Total: -19.00 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.84 -9.16 -41.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036766594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.451 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds