Wall clock time and date at job start Sat Apr 11 2020 07:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35967 * 120.56527 * 2 1 4 4 C 1.40842 * 119.33521 * 179.97438 * 3 2 1 5 5 O 1.21859 * 119.75475 * 180.02562 * 4 3 2 6 6 O 1.34380 * 120.49134 * 359.97438 * 4 3 2 7 7 C 1.33726 * 121.20293 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.68891 * 180.02562 * 7 6 4 9 9 C 1.37593 * 120.62105 * 0.28353 * 7 6 4 10 10 C 1.47521 * 120.25747 * 179.70259 * 9 7 6 11 11 O 1.21592 * 120.00122 * 89.99424 * 10 9 7 12 12 N 1.34778 * 119.99849 * 269.99612 * 10 9 7 13 13 C 1.46595 * 119.68280 * 359.73098 * 12 10 9 14 14 C 1.54380 * 110.35206 * 132.09942 * 13 12 10 15 15 C 1.51516 * 107.26305 * 51.31391 * 14 13 12 16 16 H 1.08994 * 108.81812 * 53.30315 * 15 14 13 17 17 C 1.55370 * 107.78304 * 294.99640 * 15 14 13 18 18 H 1.08993 * 112.27347 * 309.15990 * 17 15 14 19 19 C 1.53746 * 100.22282 * 190.94018 * 17 15 14 20 20 C 1.55289 * 101.84087 * 39.09227 * 19 17 15 21 21 N 1.45467 * 117.33935 * 177.96347 * 15 14 13 22 22 C 1.36942 * 126.40609 * 329.35325 * 21 15 14 23 23 H 1.07999 * 119.99838 * 359.96765 * 22 21 15 24 24 C 1.38809 * 120.00234 * 179.97438 * 22 21 15 25 25 N 1.31621 * 120.00055 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00300 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.46756 * 359.97438 * 26 24 22 28 28 H 1.48491 * 109.47258 * 119.99703 * 26 24 22 29 29 H 1.48501 * 109.47231 * 240.00274 * 26 24 22 30 30 C 1.47717 * 119.68473 * 179.97438 * 12 10 9 31 31 H 1.08994 * 109.47456 * 89.99851 * 1 2 3 32 32 H 1.09004 * 109.46691 * 210.00001 * 1 2 3 33 33 H 1.09003 * 109.47203 * 329.99506 * 1 2 3 34 34 H 1.07999 * 120.33159 * 0.02562 * 3 2 1 35 35 H 1.09002 * 109.47152 * 0.02562 * 8 7 6 36 36 H 1.09001 * 109.46980 * 240.00342 * 8 7 6 37 37 H 1.09004 * 109.47113 * 120.00323 * 8 7 6 38 38 H 1.08996 * 109.25338 * 252.46439 * 13 12 10 39 39 H 1.08995 * 109.25862 * 11.89976 * 13 12 10 40 40 H 1.09001 * 110.03855 * 291.81186 * 14 13 12 41 41 H 1.08993 * 109.80063 * 170.68576 * 14 13 12 42 42 H 1.08996 * 110.94996 * 157.23153 * 19 17 15 43 43 H 1.09000 * 110.95450 * 280.95648 * 19 17 15 44 44 H 1.09001 * 109.91602 * 96.86801 * 20 19 17 45 45 H 1.08997 * 109.91827 * 218.17062 * 20 19 17 46 46 H 0.97005 * 120.00407 * 180.02562 * 25 24 22 47 47 H 1.09003 * 110.07189 * 351.26756 * 30 12 10 48 48 H 1.08998 * 110.06871 * 112.84581 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6065 1.1405 0.0005 5 8 4.2338 2.1852 0.0010 6 8 4.2633 -0.0318 0.0016 7 6 3.6041 -1.1953 0.0016 8 6 4.3752 -2.4901 0.0034 9 6 2.2285 -1.2214 -0.0053 10 6 1.5094 -2.5095 -0.0118 11 8 1.2079 -3.0428 1.0385 12 7 1.1867 -3.0951 -1.1820 13 6 1.5484 -2.4431 -2.4442 14 6 2.2168 -3.4553 -3.3991 15 6 1.3073 -4.6644 -3.4811 16 1 0.3049 -4.3326 -3.7514 17 6 1.2656 -5.3231 -2.0746 18 1 2.2627 -5.4986 -1.6709 19 6 0.5594 -6.6460 -2.4136 20 6 1.1970 -7.0057 -3.7831 21 7 1.7106 -5.7449 -4.3676 22 6 2.4306 -5.6202 -5.5258 23 1 2.7544 -4.6449 -5.8579 24 6 2.7440 -6.7472 -6.2730 25 7 2.3489 -7.9358 -5.8686 26 14 3.7255 -6.5770 -7.8532 27 1 4.0446 -5.1454 -8.0859 28 1 4.9861 -7.3534 -7.7391 29 1 2.9253 -7.0965 -8.9913 30 6 0.4672 -4.3852 -1.1805 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.6731 2.1144 0.0004 35 1 5.4441 -2.2764 0.0049 36 1 4.1207 -3.0657 -0.8866 37 1 4.1186 -3.0646 0.8935 38 1 0.6493 -2.0422 -2.9121 39 1 2.2419 -1.6270 -2.2414 40 1 3.1909 -3.7500 -3.0087 41 1 2.3318 -3.0102 -4.3873 42 1 0.7818 -7.4088 -1.6676 43 1 -0.5164 -6.4997 -2.5109 44 1 2.0171 -7.7088 -3.6375 45 1 0.4440 -7.4402 -4.4406 46 1 2.5683 -8.7235 -6.3905 47 1 0.4186 -4.7853 -0.1677 48 1 -0.5382 -4.2532 -1.5803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036766594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:31 Heat of formation + Delta-G solvation = -64.012164 kcal Electronic energy + Delta-G solvation = -31897.673087 eV Core-core repulsion = 27725.643348 eV Total energy + Delta-G solvation = -4172.029739 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.32455 -41.53155 -39.85617 -39.04363 -37.05936 -36.81511 -34.56383 -33.85174 -33.01528 -31.39783 -29.94923 -29.79781 -28.83637 -26.70250 -25.81652 -24.64821 -23.77936 -23.10487 -21.95790 -21.64653 -20.78285 -19.45219 -19.07424 -18.24295 -18.19779 -17.74035 -17.32170 -16.94057 -16.31234 -16.15294 -15.84701 -15.60795 -15.21326 -15.12594 -14.90647 -14.69599 -14.62179 -14.49246 -14.23991 -14.11436 -13.89945 -13.75944 -13.48391 -13.41739 -13.29536 -13.11182 -13.05951 -12.79855 -12.70733 -12.46625 -12.12452 -11.95588 -11.79097 -11.60384 -11.55316 -11.51759 -11.45649 -11.09667 -10.91841 -10.69091 -9.78266 -9.51409 -8.83705 -7.81279 -5.14827 -0.71925 0.15078 1.01126 1.37118 1.47479 1.48428 1.57406 1.79868 2.04809 2.52069 2.96611 3.09056 3.34882 3.38395 3.49210 3.62583 3.81457 3.88846 3.97674 4.04174 4.17053 4.19852 4.24245 4.34480 4.35429 4.43186 4.51610 4.56517 4.63681 4.69231 4.71823 4.75324 4.79549 4.84647 4.90316 4.93921 5.04013 5.07530 5.13559 5.15786 5.25165 5.44662 5.55915 5.58946 5.70816 5.81711 5.89618 6.22105 6.24265 6.28064 6.94082 7.12782 7.83446 8.51205 9.30528 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.003201 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.967466 B = 8744.770529 C = 9782.138752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.069 3.931 3 C -0.278 4.278 4 C 0.491 3.509 5 O -0.518 6.518 6 O -0.261 6.261 7 C 0.193 3.807 8 C -0.125 4.125 9 C -0.265 4.265 10 C 0.589 3.411 11 O -0.559 6.559 12 N -0.591 5.591 13 C 0.120 3.880 14 C -0.124 4.124 15 C 0.158 3.842 16 H 0.024 0.976 17 C -0.108 4.108 18 H 0.070 0.930 19 C -0.121 4.121 20 C 0.181 3.819 21 N -0.615 5.615 22 C -0.224 4.224 23 H 0.088 0.912 24 C -0.068 4.068 25 N -0.953 5.953 26 Si 0.968 3.032 27 H -0.263 1.263 28 H -0.297 1.297 29 H -0.298 1.298 30 C 0.135 3.865 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.184 0.816 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.016 0.984 45 H 0.001 0.999 46 H 0.243 0.757 47 H 0.095 0.905 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.660 14.036 12.935 19.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.068 3.932 3 C -0.297 4.297 4 C 0.347 3.653 5 O -0.411 6.411 6 O -0.170 6.170 7 C 0.143 3.857 8 C -0.181 4.181 9 C -0.269 4.269 10 C 0.376 3.624 11 O -0.438 6.438 12 N -0.322 5.322 13 C -0.003 4.003 14 C -0.163 4.163 15 C 0.051 3.949 16 H 0.042 0.958 17 C -0.128 4.128 18 H 0.088 0.912 19 C -0.160 4.160 20 C 0.057 3.943 21 N -0.340 5.340 22 C -0.354 4.354 23 H 0.105 0.895 24 C -0.261 4.261 25 N -0.603 5.603 26 Si 0.798 3.202 27 H -0.187 1.187 28 H -0.225 1.225 29 H -0.225 1.225 30 C 0.013 3.987 31 H 0.128 0.872 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.201 0.799 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.034 0.966 45 H 0.019 0.981 46 H 0.053 0.947 47 H 0.113 0.887 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.246 14.155 13.281 19.869 hybrid contribution 0.694 -0.523 -1.275 1.543 sum -3.552 13.632 12.006 18.510 Atomic orbital electron populations 1.21157 0.87126 1.05101 1.05259 1.20473 0.98705 0.89607 0.84454 1.22272 0.91003 1.01341 1.15085 1.19712 0.89354 0.80365 0.75864 1.90989 1.71778 1.27157 1.51173 1.83407 1.45159 1.14957 1.73465 1.23115 0.90584 0.85510 0.86451 1.21310 1.02425 0.88387 1.05932 1.19788 0.92888 0.95582 1.18688 1.17582 0.78135 0.83210 0.83457 1.90811 1.55732 1.65145 1.32136 1.48288 1.55956 1.22256 1.05725 1.21878 1.01135 0.94433 0.82866 1.21905 0.99028 0.95820 0.99541 1.20868 0.95830 0.89172 0.89017 0.95813 1.22468 0.99491 0.95128 0.95757 0.91171 1.22576 0.99832 0.96886 0.96700 1.21298 0.94781 0.87812 0.90447 1.44489 1.62999 1.02969 1.23525 1.19417 1.25004 0.93488 0.97450 0.89455 1.25547 1.02899 0.95398 1.02264 1.70161 1.52044 0.97761 1.40312 0.85147 0.77618 0.77806 0.79645 1.18736 1.22470 1.22500 1.21596 0.94916 0.81004 1.01167 0.87221 0.91134 0.87618 0.79895 0.87046 0.87390 0.87043 0.89155 0.89072 0.92057 0.90924 0.90381 0.90322 0.96580 0.98061 0.94727 0.88663 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 9.67 71.24 0.69 -0.71 16 2 C 0.07 1.09 5.93 -19.50 -0.12 0.97 16 3 C -0.28 -4.79 9.64 22.38 0.22 -4.57 16 4 C 0.49 11.85 7.93 68.46 0.54 12.39 16 5 O -0.52 -16.14 17.93 18.71 0.34 -15.80 16 6 O -0.26 -5.86 9.80 25.78 0.25 -5.61 16 7 C 0.19 3.62 6.74 25.53 0.17 3.80 16 8 C -0.13 -1.89 9.20 71.24 0.66 -1.24 16 9 C -0.27 -4.98 3.62 -20.09 -0.07 -5.05 16 10 C 0.59 12.65 4.68 86.69 0.41 13.06 16 11 O -0.56 -15.47 16.46 -4.01 -0.07 -15.53 16 12 N -0.59 -12.03 2.99 -821.04 -2.46 -14.49 16 13 C 0.12 2.26 6.25 86.83 0.54 2.80 16 14 C -0.12 -3.35 5.50 30.58 0.17 -3.19 16 15 C 0.16 5.34 2.57 45.51 0.12 5.45 16 16 H 0.02 0.82 7.92 -2.39 -0.02 0.80 16 17 C -0.11 -3.12 2.85 -9.99 -0.03 -3.15 16 18 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 19 C -0.12 -3.90 6.54 31.63 0.21 -3.69 16 20 C 0.18 8.37 5.45 86.85 0.47 8.84 16 21 N -0.62 -28.58 3.35 -669.91 -2.24 -30.83 16 22 C -0.22 -11.59 9.88 84.03 0.83 -10.76 16 23 H 0.09 4.24 7.21 -2.91 -0.02 4.22 16 24 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 25 N -0.95 -55.74 10.44 21.65 0.23 -55.51 16 26 Si 0.97 44.18 29.55 68.60 2.03 46.21 16 27 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 28 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 29 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 30 C 0.13 2.99 5.95 85.88 0.51 3.50 16 31 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.97 7.19 -2.38 -0.02 0.96 16 33 H 0.11 0.72 8.09 -2.39 -0.02 0.70 16 34 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 35 H 0.11 1.35 8.13 -2.39 -0.02 1.33 16 36 H 0.11 1.69 8.12 -2.39 -0.02 1.67 16 37 H 0.11 1.65 8.13 -2.38 -0.02 1.64 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.48 6.05 -2.39 -0.01 1.47 16 40 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 41 H 0.07 2.07 7.62 -2.39 -0.02 2.05 16 42 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 43 H 0.08 2.24 8.11 -2.39 -0.02 2.22 16 44 H 0.02 0.85 7.21 -2.39 -0.02 0.83 16 45 H 0.00 0.06 7.77 -2.39 -0.02 0.04 16 46 H 0.24 14.00 8.31 -92.70 -0.77 13.23 16 47 H 0.10 2.17 6.99 -2.39 -0.02 2.15 16 48 H 0.09 1.76 8.08 -2.39 -0.02 1.74 16 Total: -1.00 -71.95 383.43 4.82 -67.13 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.97 Total: 9.24 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 5.78 Total: 15.19 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -4.48 Total: -100.83 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: 0.52 Total: -36.94 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -71.95 4.82 -67.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036766594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.115 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds