Wall clock time and date at job start Sat Apr 11 2020 07:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35955 * 120.56791 * 2 1 4 4 C 1.40844 * 119.34222 * 179.97438 * 3 2 1 5 5 O 1.21855 * 119.76293 * 180.02562 * 4 3 2 6 6 O 1.34381 * 120.48087 * 359.72892 * 4 3 2 7 7 C 1.33723 * 121.20777 * 0.55168 * 6 4 3 8 8 C 1.50708 * 119.68852 * 179.71790 * 7 6 4 9 9 C 1.37588 * 120.62088 * 359.44515 * 7 6 4 10 10 C 1.47516 * 120.26081 * 180.29384 * 9 7 6 11 11 O 1.21603 * 120.00041 * 74.93097 * 10 9 7 12 12 N 1.34777 * 120.00143 * 254.94000 * 10 9 7 13 13 C 1.46947 * 120.44496 * 5.25669 * 12 10 9 14 14 C 1.53588 * 108.53151 * 125.75432 * 13 12 10 15 15 H 1.09003 * 110.59767 * 172.16164 * 14 13 12 16 16 C 1.53374 * 108.68978 * 294.36235 * 14 13 12 17 17 C 1.53009 * 109.26907 * 60.29147 * 16 14 13 18 18 C 1.53009 * 109.79297 * 60.57241 * 17 16 14 19 19 C 1.53370 * 109.25968 * 299.41900 * 18 17 16 20 20 H 1.09000 * 111.08868 * 177.83386 * 19 18 17 21 21 C 1.46949 * 120.44286 * 184.98350 * 12 10 9 22 22 N 1.47569 * 107.98153 * 56.37826 * 19 18 17 23 23 C 1.36937 * 121.61061 * 122.23950 * 22 19 18 24 24 H 1.08003 * 119.99668 * 25.75178 * 23 22 19 25 25 C 1.38812 * 120.00064 * 205.75076 * 23 22 19 26 26 N 1.31616 * 119.99881 * 18.76871 * 25 23 22 27 27 Si 1.86800 * 119.99847 * 198.77278 * 25 23 22 28 28 H 1.48498 * 109.47028 * 89.99793 * 27 25 23 29 29 H 1.48499 * 109.47193 * 209.99823 * 27 25 23 30 30 H 1.48496 * 109.47209 * 329.99727 * 27 25 23 31 31 H 1.08995 * 109.47591 * 272.01438 * 1 2 3 32 32 H 1.09002 * 109.47062 * 32.02283 * 1 2 3 33 33 H 1.09005 * 109.46561 * 152.01393 * 1 2 3 34 34 H 1.08004 * 120.33270 * 359.94874 * 3 2 1 35 35 H 1.09001 * 109.47064 * 272.09379 * 8 7 6 36 36 H 1.09004 * 109.46949 * 152.09668 * 8 7 6 37 37 H 1.08998 * 109.46958 * 32.09760 * 8 7 6 38 38 H 1.08998 * 109.62383 * 245.47032 * 13 12 10 39 39 H 1.09001 * 109.62260 * 5.85124 * 13 12 10 40 40 H 1.09001 * 109.50718 * 180.23209 * 16 14 13 41 41 H 1.08998 * 109.50169 * 300.35486 * 16 14 13 42 42 H 1.09001 * 109.41438 * 300.47494 * 17 16 14 43 43 H 1.09002 * 109.41613 * 180.67085 * 17 16 14 44 44 H 1.09002 * 109.50551 * 179.48525 * 18 17 16 45 45 H 1.09001 * 109.54163 * 59.37807 * 18 17 16 46 46 H 1.09001 * 109.62426 * 353.95265 * 21 12 10 47 47 H 1.09006 * 109.62560 * 114.51308 * 21 12 10 48 48 H 0.97001 * 119.99808 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1706 0.0000 4 6 3.6065 1.1405 0.0005 5 8 4.2339 2.1851 0.0010 6 8 4.2632 -0.0319 0.0065 7 6 3.6041 -1.1954 0.0011 8 6 4.3752 -2.4902 0.0017 9 6 2.2284 -1.2215 0.0006 10 6 1.5093 -2.5095 0.0012 11 8 1.4516 -3.1732 1.0184 12 7 0.9164 -2.9507 -1.1259 13 6 1.0764 -2.2157 -2.3882 14 6 1.5998 -3.1877 -3.4561 15 1 1.6002 -2.7146 -4.4381 16 6 3.0112 -3.6391 -3.0603 17 6 2.9540 -4.3445 -1.7037 18 6 2.0472 -5.5734 -1.7966 19 6 0.6320 -5.1296 -2.1871 20 1 -0.0312 -5.9874 -2.2990 21 6 0.1062 -4.1766 -1.1101 22 7 0.7238 -4.3754 -3.4521 23 6 0.0301 -4.7592 -4.5686 24 1 -0.8813 -5.3300 -4.4683 25 6 0.4981 -4.4146 -5.8292 26 7 1.7550 -4.0585 -5.9898 27 14 -0.6559 -4.4562 -7.2975 28 1 -1.3099 -3.1318 -7.4508 29 1 0.1168 -4.7718 -8.5257 30 1 -1.6921 -5.4981 -7.0833 31 1 -0.3634 0.0361 1.0269 32 1 -0.3633 0.8713 -0.5449 33 1 -0.3632 -0.9076 -0.4823 34 1 1.6731 2.1143 -0.0008 35 1 4.5979 -2.7809 -1.0250 36 1 3.7787 -3.2681 0.4783 37 1 5.3067 -2.3581 0.5521 38 1 0.1136 -1.8118 -2.7012 39 1 1.7877 -1.4015 -2.2501 40 1 3.3975 -4.3271 -3.8123 41 1 3.6652 -2.7698 -2.9913 42 1 2.5586 -3.6581 -0.9549 43 1 3.9578 -4.6558 -1.4146 44 1 2.0171 -6.0773 -0.8306 45 1 2.4356 -6.2569 -2.5517 46 1 0.1825 -4.6532 -0.1328 47 1 -0.9347 -3.9302 -1.3200 48 1 2.0821 -3.8181 -6.8708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039745871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:36 Heat of formation + Delta-G solvation = -20.547573 kcal Electronic energy + Delta-G solvation = -33684.704303 eV Core-core repulsion = 29514.559330 eV Total energy + Delta-G solvation = -4170.144973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.32332 -40.81241 -38.18065 -37.74932 -36.09787 -34.06946 -33.30748 -32.86990 -31.79110 -30.41808 -29.01074 -28.33468 -26.96437 -25.68261 -24.41251 -23.67894 -22.18834 -21.81652 -21.43514 -20.35336 -18.78867 -18.15571 -18.09480 -17.05470 -16.77007 -16.34750 -16.03313 -15.05585 -14.89406 -14.78426 -14.38535 -14.11946 -13.96362 -13.78098 -13.71083 -13.67704 -13.41988 -13.24072 -12.99469 -12.83364 -12.73630 -12.60527 -12.32970 -12.07918 -11.91961 -11.81612 -11.52411 -11.26920 -11.08691 -10.80644 -10.59578 -10.41544 -10.35592 -10.28065 -10.18854 -10.15643 -9.89792 -9.56237 -9.48133 -8.64376 -8.47686 -8.07779 -6.78864 -5.94542 -3.36506 0.27756 1.22578 2.09366 2.58412 3.00019 3.23750 3.28195 3.36691 3.37287 3.98174 4.11128 4.34547 4.45014 4.60580 4.87844 5.02284 5.05271 5.19956 5.23964 5.24410 5.30773 5.49171 5.51778 5.57193 5.58398 5.64868 5.70014 5.74925 5.78459 5.82588 5.91786 5.94173 6.01198 6.10518 6.24088 6.28998 6.33590 6.41296 6.57464 6.69665 6.85921 6.91120 6.95087 6.96130 7.33439 7.35636 7.39607 7.59890 7.67682 8.21132 8.23272 9.00810 9.63183 10.22807 11.12174 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014086 B = 0.004229 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.275238 B = 6619.604875 C = 7040.376236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 C -0.283 4.283 4 C 0.499 3.501 5 O -0.478 6.478 6 O -0.256 6.256 7 C 0.195 3.805 8 C -0.133 4.133 9 C -0.256 4.256 10 C 0.578 3.422 11 O -0.543 6.543 12 N -0.577 5.577 13 C 0.085 3.915 14 C 0.176 3.824 15 H 0.123 0.877 16 C -0.116 4.116 17 C -0.147 4.147 18 C -0.123 4.123 19 C 0.151 3.849 20 H 0.080 0.920 21 C 0.099 3.901 22 N -0.578 5.578 23 C -0.250 4.250 24 H 0.070 0.930 25 C 0.004 3.996 26 N -0.897 5.897 27 Si 0.902 3.098 28 H -0.288 1.288 29 H -0.292 1.292 30 H -0.280 1.280 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.162 0.838 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.080 0.920 43 H 0.036 0.964 44 H 0.044 0.956 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 4.217 10.583 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 C -0.302 4.302 4 C 0.352 3.648 5 O -0.369 6.369 6 O -0.164 6.164 7 C 0.145 3.855 8 C -0.189 4.189 9 C -0.261 4.261 10 C 0.366 3.634 11 O -0.422 6.422 12 N -0.308 5.308 13 C -0.039 4.039 14 C 0.068 3.932 15 H 0.140 0.860 16 C -0.155 4.155 17 C -0.184 4.184 18 C -0.162 4.162 19 C 0.043 3.957 20 H 0.098 0.902 21 C -0.024 4.024 22 N -0.298 5.298 23 C -0.379 4.379 24 H 0.087 0.913 25 C -0.194 4.194 26 N -0.541 5.541 27 Si 0.732 3.268 28 H -0.215 1.215 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.180 0.820 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.336 4.401 10.899 11.759 hybrid contribution -0.594 0.140 -0.993 1.166 sum -0.258 4.541 9.906 10.900 Atomic orbital electron populations 1.21114 0.89136 1.04822 1.03945 1.20293 0.97492 0.90655 0.85562 1.22189 0.92617 1.00181 1.15257 1.19268 0.88436 0.80747 0.76337 1.90994 1.70932 1.25809 1.49122 1.83403 1.44650 1.14604 1.73759 1.22801 0.90457 0.85408 0.86870 1.21653 1.01430 0.89669 1.06115 1.19819 0.92766 0.95728 1.17738 1.17276 0.78884 0.83716 0.83489 1.90799 1.61512 1.57362 1.32546 1.48211 1.48315 1.25884 1.08425 1.22747 1.01197 0.95492 0.84423 1.21210 0.87960 0.86912 0.97100 0.86011 1.21862 0.98302 0.98986 0.96367 1.22440 0.97747 0.98640 0.99610 1.21924 0.97444 0.97432 0.99382 1.21151 0.94672 0.93070 0.86769 0.90161 1.22244 0.93793 0.85272 1.01105 1.44433 1.52598 1.25736 1.07071 1.19176 1.02175 1.32903 0.83654 0.91269 1.24957 0.95340 1.01747 0.97396 1.69948 1.12322 1.49476 1.22400 0.86290 0.80247 0.77907 0.82316 1.21473 1.21823 1.20499 0.89194 0.89616 0.89831 0.82003 0.86887 0.86985 0.88779 0.91490 0.91520 0.90539 0.94790 0.90261 0.94563 0.93757 0.92247 0.89702 0.91575 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 9.70 36.01 0.35 -0.97 16 2 C 0.06 0.74 5.50 -104.06 -0.57 0.17 16 3 C -0.28 -3.43 9.65 -39.42 -0.38 -3.82 16 4 C 0.50 7.36 7.93 31.72 0.25 7.61 16 5 O -0.48 -8.35 17.93 -19.60 -0.35 -8.71 16 6 O -0.26 -3.61 9.81 -17.63 -0.17 -3.78 16 7 C 0.19 2.55 7.03 -34.54 -0.24 2.31 16 8 C -0.13 -1.51 8.16 36.01 0.29 -1.21 16 9 C -0.26 -3.48 3.76 -104.97 -0.39 -3.88 16 10 C 0.58 8.70 2.61 -12.48 -0.03 8.67 16 11 O -0.54 -9.38 15.70 5.28 0.08 -9.30 16 12 N -0.58 -8.83 1.13 -173.76 -0.20 -9.02 16 13 C 0.09 1.38 5.09 -3.49 -0.02 1.36 16 14 C 0.18 3.46 2.68 -66.85 -0.18 3.28 16 15 H 0.12 2.81 5.74 -51.93 -0.30 2.52 16 16 C -0.12 -2.14 5.49 -26.53 -0.15 -2.29 16 17 C -0.15 -2.39 3.34 -26.72 -0.09 -2.48 16 18 C -0.12 -2.12 5.57 -26.53 -0.15 -2.27 16 19 C 0.15 2.72 3.62 -67.09 -0.24 2.48 16 20 H 0.08 1.43 8.01 -51.93 -0.42 1.02 16 21 C 0.10 1.57 5.85 -3.74 -0.02 1.55 16 22 N -0.58 -12.19 2.54 -155.70 -0.40 -12.59 16 23 C -0.25 -6.01 9.72 -15.06 -0.15 -6.16 16 24 H 0.07 1.66 7.90 -52.48 -0.41 1.24 16 25 C 0.00 0.11 4.99 -17.43 -0.09 0.02 16 26 N -0.90 -23.04 11.01 55.49 0.61 -22.43 16 27 Si 0.90 19.96 29.59 -169.99 -5.03 14.93 16 28 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 30 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.08 0.93 6.07 -51.93 -0.31 0.62 16 34 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 35 H 0.11 1.29 5.50 -51.93 -0.29 1.00 16 36 H 0.11 1.39 5.52 -51.93 -0.29 1.11 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.07 1.00 6.11 -51.93 -0.32 0.68 16 40 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 41 H 0.03 0.57 7.47 -51.93 -0.39 0.18 16 42 H 0.08 1.22 1.03 -52.45 -0.05 1.17 16 43 H 0.04 0.54 7.25 -51.93 -0.38 0.16 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.08 1.31 6.97 -51.93 -0.36 0.95 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -28.25 358.74 -8.30 -36.56 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.45 Total: 4.55 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -1.81 Total: 4.39 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.02 Total: -44.04 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.44 Total: -21.78 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.25 -8.30 -36.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039745871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.008 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds