Wall clock time and date at job start Sat Apr 11 2020 07:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35960 * 120.56824 * 2 1 4 4 C 1.40842 * 119.33630 * 179.97438 * 3 2 1 5 5 O 1.21866 * 119.75137 * 180.02562 * 4 3 2 6 6 O 1.34375 * 120.49189 * 0.02562 * 4 3 2 7 7 C 1.33726 * 121.20120 * 359.67184 * 6 4 3 8 8 C 1.50702 * 119.68742 * 180.32651 * 7 6 4 9 9 C 1.37586 * 120.62475 * 0.61556 * 7 6 4 10 10 C 1.47520 * 120.26432 * 179.68902 * 9 7 6 11 11 O 1.21597 * 119.99927 * 269.72782 * 10 9 7 12 12 N 1.34776 * 120.00041 * 89.72050 * 10 9 7 13 13 C 1.47559 * 125.67426 * 359.70005 * 12 10 9 14 14 C 1.55183 * 105.00840 * 156.40371 * 13 12 10 15 15 C 1.53648 * 101.41742 * 35.49186 * 14 13 12 16 16 C 1.53653 * 111.41769 * 87.26032 * 15 14 13 17 17 C 1.55182 * 101.42038 * 155.02480 * 16 15 14 18 18 N 1.47562 * 105.00837 * 324.50985 * 17 16 15 19 19 C 1.36933 * 125.68056 * 203.82897 * 18 17 16 20 20 H 1.07994 * 120.00815 * 180.02562 * 19 18 17 21 21 C 1.38821 * 119.99633 * 0.04222 * 19 18 17 22 22 N 1.31617 * 119.99933 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00163 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47194 * 89.99460 * 23 21 19 25 25 H 1.48500 * 109.46974 * 209.99947 * 23 21 19 26 26 H 1.48502 * 109.46943 * 329.99724 * 23 21 19 27 27 C 1.47415 * 108.65087 * 23.86000 * 18 17 16 28 28 C 1.47406 * 125.67372 * 180.02562 * 12 10 9 29 29 H 1.09001 * 109.47566 * 270.01906 * 1 2 3 30 30 H 1.09002 * 109.47504 * 30.02398 * 1 2 3 31 31 H 1.09006 * 109.47438 * 150.02183 * 1 2 3 32 32 H 1.08005 * 120.32851 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47227 * 270.28346 * 8 7 6 34 34 H 1.08998 * 109.47046 * 30.28498 * 8 7 6 35 35 H 1.09001 * 109.47307 * 150.28662 * 8 7 6 36 36 H 1.09002 * 110.33255 * 275.28457 * 13 12 10 37 37 H 1.08998 * 110.33484 * 37.51804 * 13 12 10 38 38 H 1.09008 * 111.03000 * 277.45974 * 14 13 12 39 39 H 1.09000 * 111.07092 * 153.54543 * 14 13 12 40 40 H 1.08994 * 111.03646 * 273.06249 * 16 15 14 41 41 H 1.09005 * 111.03186 * 36.99367 * 16 15 14 42 42 H 1.08997 * 110.33452 * 205.63027 * 17 16 15 43 43 H 1.08997 * 110.42000 * 83.43594 * 17 16 15 44 44 H 0.96998 * 119.99752 * 180.02562 * 22 21 19 45 45 H 1.08988 * 109.98600 * 238.53510 * 27 18 17 46 46 H 1.08998 * 110.01551 * 117.24799 * 27 18 17 47 47 H 1.08999 * 109.98157 * 301.19508 * 28 12 10 48 48 H 1.09003 * 109.98425 * 62.45841 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1706 0.0000 4 6 3.6065 1.1404 0.0005 5 8 4.2339 2.1851 0.0010 6 8 4.2633 -0.0319 0.0006 7 6 3.6040 -1.1954 0.0066 8 6 4.3751 -2.4902 0.0138 9 6 2.2284 -1.2215 0.0003 10 6 1.5093 -2.5095 0.0001 11 8 1.2134 -3.0405 -1.0531 12 7 1.1803 -3.0978 1.1672 13 6 1.4816 -2.5701 2.5118 14 6 0.4270 -3.2223 3.4450 15 6 0.2791 -4.6140 2.8111 16 6 1.3179 -5.5985 3.3702 17 6 0.6076 -6.9588 3.1391 18 7 -0.8248 -6.6850 3.3643 19 6 -1.7680 -7.6106 3.7231 20 1 -2.7952 -7.3082 3.8640 21 6 -1.4038 -8.9376 3.9060 22 7 -0.1521 -9.3062 3.7342 23 14 -2.6906 -10.2005 4.3948 24 1 -3.2920 -10.7927 3.1730 25 1 -2.0519 -11.2713 5.2013 26 1 -3.7510 -9.5411 5.1986 27 6 -1.0716 -5.2494 3.1381 28 6 0.4656 -4.3788 1.3127 29 1 -0.3634 0.0003 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6731 2.1143 -0.0004 33 1 4.5658 -2.8053 -1.0121 34 1 5.3233 -2.3455 0.5316 35 1 3.7940 -3.2563 0.5271 36 1 2.4873 -2.8601 2.8159 37 1 1.3792 -1.4850 2.5246 38 1 -0.5154 -2.6754 3.4127 39 1 0.7997 -3.2953 4.4668 40 1 2.2506 -5.5438 2.8089 41 1 1.4913 -5.4231 4.4320 42 1 0.9681 -7.7002 3.8520 43 1 0.7712 -7.3047 2.1185 44 1 0.1023 -10.2335 3.8617 45 1 -1.4882 -4.7968 4.0378 46 1 -1.7582 -5.1161 2.3021 47 1 -0.5055 -4.3215 0.8210 48 1 1.0557 -5.1860 0.8787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041459031.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:39 Heat of formation + Delta-G solvation = -44.130358 kcal Electronic energy + Delta-G solvation = -31330.905504 eV Core-core repulsion = 27159.737904 eV Total energy + Delta-G solvation = -4171.167599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.47198 -40.50721 -38.79783 -38.08123 -36.26155 -35.81194 -33.30455 -32.66712 -30.70298 -29.34307 -29.21075 -28.75686 -28.14057 -25.87754 -24.70698 -23.88411 -22.63142 -22.40713 -20.65258 -20.34580 -19.02007 -18.71271 -17.87575 -17.32102 -16.98707 -16.76735 -16.31096 -15.83147 -15.07873 -14.88138 -14.54811 -14.43601 -14.24091 -14.10954 -13.96001 -13.86919 -13.79801 -13.37097 -13.05814 -13.00757 -12.74441 -12.71151 -12.60087 -12.24176 -12.11711 -12.05063 -11.83175 -11.45655 -11.32711 -11.00833 -10.90884 -10.84078 -10.66642 -10.37203 -10.21637 -10.10124 -10.01865 -9.82827 -9.58055 -8.79287 -8.76710 -8.69667 -6.90268 -5.71184 -3.12705 0.00299 0.96577 1.82217 2.27621 2.68081 2.87240 3.36537 3.41750 3.43380 3.69182 3.83354 4.11897 4.30905 4.43317 4.51738 4.61050 4.71527 4.76399 4.84288 4.91338 5.01977 5.09726 5.15561 5.19987 5.24176 5.28705 5.35114 5.43632 5.45649 5.66179 5.68143 5.70637 5.78811 5.81647 5.88848 6.00117 6.07194 6.10471 6.23899 6.44864 6.48242 6.64228 6.69261 6.72021 7.10947 7.29770 7.43173 7.56273 7.78661 7.87679 8.29200 9.15938 9.76589 10.40828 11.32928 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.025601 B = 0.002443 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.462735 B =11459.070306 C =11738.977298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.060 3.940 3 C -0.279 4.279 4 C 0.499 3.501 5 O -0.474 6.474 6 O -0.255 6.255 7 C 0.189 3.811 8 C -0.121 4.121 9 C -0.253 4.253 10 C 0.591 3.409 11 O -0.525 6.525 12 N -0.606 5.606 13 C 0.099 3.901 14 C -0.116 4.116 15 C -0.081 4.081 16 C -0.131 4.131 17 C 0.152 3.848 18 N -0.604 5.604 19 C -0.223 4.223 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.152 3.848 28 C 0.128 3.872 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.164 0.836 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.012 0.988 44 H 0.252 0.748 45 H 0.030 0.970 46 H 0.024 0.976 47 H 0.073 0.927 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.353 17.762 -3.946 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.059 3.941 3 C -0.298 4.298 4 C 0.351 3.649 5 O -0.364 6.364 6 O -0.164 6.164 7 C 0.139 3.861 8 C -0.177 4.177 9 C -0.257 4.257 10 C 0.377 3.623 11 O -0.401 6.401 12 N -0.340 5.340 13 C -0.024 4.024 14 C -0.155 4.155 15 C -0.082 4.082 16 C -0.170 4.170 17 C 0.028 3.972 18 N -0.330 5.330 19 C -0.351 4.351 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.025 3.975 28 C 0.006 3.994 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.181 0.819 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.123 0.877 43 H 0.030 0.970 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.042 0.958 47 H 0.091 0.909 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.691 17.794 -4.536 19.544 hybrid contribution -0.848 -0.517 0.165 1.007 sum 5.843 17.277 -4.371 18.755 Atomic orbital electron populations 1.21081 0.88960 1.04751 1.04090 1.20282 0.97564 0.90511 0.85772 1.22232 0.92580 1.00243 1.14774 1.19282 0.88428 0.80724 0.76418 1.91017 1.70884 1.25724 1.48802 1.83409 1.44598 1.14583 1.73810 1.22793 0.90323 0.85571 0.87378 1.21172 1.01451 0.89173 1.05858 1.19794 0.92661 0.95432 1.17843 1.17080 0.79171 0.83103 0.82944 1.90864 1.54420 1.64395 1.30429 1.48726 1.56545 1.23366 1.05340 1.22460 0.99631 0.98465 0.81827 1.22653 0.98566 0.95446 0.98794 1.21549 0.99037 0.94747 0.92877 1.22920 0.96242 0.97955 0.99833 1.21994 0.82830 0.92464 0.99949 1.44617 1.05459 1.02020 1.80914 1.19061 0.89473 0.87830 1.38781 0.90486 1.24781 0.96650 0.97083 1.02073 1.69788 1.15091 1.16251 1.55925 0.86080 0.80233 0.81202 0.78024 1.21618 1.21653 1.20702 1.21082 0.92201 0.86583 0.97601 1.21955 0.97080 0.83917 0.96403 0.88963 0.89637 0.89939 0.81856 0.87441 0.88302 0.87987 0.91006 0.91053 0.90546 0.89374 0.92315 0.91620 0.87653 0.96972 0.93704 0.95218 0.95813 0.90855 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 9.67 36.00 0.35 -0.64 16 2 C 0.06 0.55 5.93 -104.05 -0.62 -0.07 16 3 C -0.28 -2.60 9.64 -39.41 -0.38 -2.98 16 4 C 0.50 5.90 7.93 31.72 0.25 6.15 16 5 O -0.47 -7.05 17.93 -19.61 -0.35 -7.40 16 6 O -0.26 -2.76 9.81 -17.62 -0.17 -2.94 16 7 C 0.19 1.78 7.03 -34.54 -0.24 1.54 16 8 C -0.12 -0.86 9.80 36.01 0.35 -0.51 16 9 C -0.25 -2.61 4.53 -104.96 -0.48 -3.09 16 10 C 0.59 7.34 4.26 -12.48 -0.05 7.29 16 11 O -0.52 -8.52 17.44 5.28 0.09 -8.43 16 12 N -0.61 -7.08 3.31 -172.08 -0.57 -7.65 16 13 C 0.10 0.92 6.62 -2.31 -0.02 0.90 16 14 C -0.12 -1.24 5.93 -25.24 -0.15 -1.39 16 15 C -0.08 -1.18 0.61 -154.02 -0.09 -1.27 16 16 C -0.13 -2.12 5.85 -25.24 -0.15 -2.27 16 17 C 0.15 3.41 5.85 -2.31 -0.01 3.40 16 18 N -0.60 -14.44 3.41 -170.41 -0.58 -15.02 16 19 C -0.22 -5.95 10.28 -15.06 -0.15 -6.11 16 20 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -25.95 10.10 55.49 0.56 -25.39 16 23 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.15 2.83 6.51 -3.64 -0.02 2.80 16 28 C 0.13 1.83 6.02 -3.64 -0.02 1.80 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.08 0.77 7.18 -51.93 -0.37 0.39 16 32 H 0.16 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.79 6.99 -51.93 -0.36 0.42 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.55 7.70 -51.93 -0.40 0.15 16 38 H 0.08 0.76 8.09 -51.92 -0.42 0.34 16 39 H 0.09 0.88 7.78 -51.93 -0.40 0.47 16 40 H 0.06 0.85 7.94 -51.93 -0.41 0.43 16 41 H 0.07 1.04 7.82 -51.93 -0.41 0.63 16 42 H 0.11 2.71 5.89 -51.93 -0.31 2.40 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.03 0.55 7.86 -51.94 -0.41 0.14 16 46 H 0.02 0.45 7.42 -51.93 -0.39 0.07 16 47 H 0.07 1.13 7.44 -51.93 -0.39 0.74 16 48 H 0.08 1.21 7.78 -51.93 -0.40 0.81 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -32.78 387.69 -8.91 -41.69 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -7.17 Total: -2.34 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.53 Total: 5.19 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.59 Total: -48.06 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.43 Total: -18.77 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.78 -8.91 -41.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041459031.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.445 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds