Wall clock time and date at job start Sat Apr 11 2020 07:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35960 * 120.56824 * 2 1 4 4 C 1.40842 * 119.33630 * 179.97438 * 3 2 1 5 5 O 1.21866 * 119.75137 * 180.02562 * 4 3 2 6 6 O 1.34375 * 120.49189 * 0.02562 * 4 3 2 7 7 C 1.33726 * 121.20120 * 359.67184 * 6 4 3 8 8 C 1.50702 * 119.68742 * 180.32651 * 7 6 4 9 9 C 1.37586 * 120.62475 * 0.61556 * 7 6 4 10 10 C 1.47520 * 120.26432 * 179.68902 * 9 7 6 11 11 O 1.21597 * 119.99927 * 269.72782 * 10 9 7 12 12 N 1.34776 * 120.00041 * 89.72050 * 10 9 7 13 13 C 1.47559 * 125.67426 * 359.70005 * 12 10 9 14 14 C 1.55183 * 105.00840 * 156.40371 * 13 12 10 15 15 C 1.53648 * 101.41742 * 35.49186 * 14 13 12 16 16 C 1.53653 * 111.41769 * 87.26032 * 15 14 13 17 17 C 1.55182 * 101.42038 * 155.02480 * 16 15 14 18 18 N 1.47562 * 105.00837 * 324.50985 * 17 16 15 19 19 C 1.36933 * 125.68056 * 203.82897 * 18 17 16 20 20 H 1.07994 * 120.00815 * 180.02562 * 19 18 17 21 21 C 1.38821 * 119.99633 * 0.04222 * 19 18 17 22 22 N 1.31617 * 119.99933 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00163 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47194 * 89.99460 * 23 21 19 25 25 H 1.48500 * 109.46974 * 209.99947 * 23 21 19 26 26 H 1.48502 * 109.46943 * 329.99724 * 23 21 19 27 27 C 1.47415 * 108.65087 * 23.86000 * 18 17 16 28 28 C 1.47406 * 125.67372 * 180.02562 * 12 10 9 29 29 H 1.09001 * 109.47566 * 270.01906 * 1 2 3 30 30 H 1.09002 * 109.47504 * 30.02398 * 1 2 3 31 31 H 1.09006 * 109.47438 * 150.02183 * 1 2 3 32 32 H 1.08005 * 120.32851 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47227 * 270.28346 * 8 7 6 34 34 H 1.08998 * 109.47046 * 30.28498 * 8 7 6 35 35 H 1.09001 * 109.47307 * 150.28662 * 8 7 6 36 36 H 1.09002 * 110.33255 * 275.28457 * 13 12 10 37 37 H 1.08998 * 110.33484 * 37.51804 * 13 12 10 38 38 H 1.09008 * 111.03000 * 277.45974 * 14 13 12 39 39 H 1.09000 * 111.07092 * 153.54543 * 14 13 12 40 40 H 1.08994 * 111.03646 * 273.06249 * 16 15 14 41 41 H 1.09005 * 111.03186 * 36.99367 * 16 15 14 42 42 H 1.08997 * 110.33452 * 205.63027 * 17 16 15 43 43 H 1.08997 * 110.42000 * 83.43594 * 17 16 15 44 44 H 0.96998 * 119.99752 * 180.02562 * 22 21 19 45 45 H 1.08988 * 109.98600 * 238.53510 * 27 18 17 46 46 H 1.08998 * 110.01551 * 117.24799 * 27 18 17 47 47 H 1.08999 * 109.98157 * 301.19508 * 28 12 10 48 48 H 1.09003 * 109.98425 * 62.45841 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1706 0.0000 4 6 3.6065 1.1404 0.0005 5 8 4.2339 2.1851 0.0010 6 8 4.2633 -0.0319 0.0006 7 6 3.6040 -1.1954 0.0066 8 6 4.3751 -2.4902 0.0138 9 6 2.2284 -1.2215 0.0003 10 6 1.5093 -2.5095 0.0001 11 8 1.2134 -3.0405 -1.0531 12 7 1.1803 -3.0978 1.1672 13 6 1.4816 -2.5701 2.5118 14 6 0.4270 -3.2223 3.4450 15 6 0.2791 -4.6140 2.8111 16 6 1.3179 -5.5985 3.3702 17 6 0.6076 -6.9588 3.1391 18 7 -0.8248 -6.6850 3.3643 19 6 -1.7680 -7.6106 3.7231 20 1 -2.7952 -7.3082 3.8640 21 6 -1.4038 -8.9376 3.9060 22 7 -0.1521 -9.3062 3.7342 23 14 -2.6906 -10.2005 4.3948 24 1 -3.2920 -10.7927 3.1730 25 1 -2.0519 -11.2713 5.2013 26 1 -3.7510 -9.5411 5.1986 27 6 -1.0716 -5.2494 3.1381 28 6 0.4656 -4.3788 1.3127 29 1 -0.3634 0.0003 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6731 2.1143 -0.0004 33 1 4.5658 -2.8053 -1.0121 34 1 5.3233 -2.3455 0.5316 35 1 3.7940 -3.2563 0.5271 36 1 2.4873 -2.8601 2.8159 37 1 1.3792 -1.4850 2.5246 38 1 -0.5154 -2.6754 3.4127 39 1 0.7997 -3.2953 4.4668 40 1 2.2506 -5.5438 2.8089 41 1 1.4913 -5.4231 4.4320 42 1 0.9681 -7.7002 3.8520 43 1 0.7712 -7.3047 2.1185 44 1 0.1023 -10.2335 3.8617 45 1 -1.4882 -4.7968 4.0378 46 1 -1.7582 -5.1161 2.3021 47 1 -0.5055 -4.3215 0.8210 48 1 1.0557 -5.1860 0.8787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041459031.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:38 Heat of formation + Delta-G solvation = -62.960531 kcal Electronic energy + Delta-G solvation = -31331.722041 eV Core-core repulsion = 27159.737904 eV Total energy + Delta-G solvation = -4171.984137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.30615 -41.58065 -39.97573 -39.04272 -37.22450 -37.05239 -34.54763 -33.86703 -32.12085 -30.67914 -30.02003 -29.84030 -29.10914 -27.32019 -25.98752 -25.02684 -23.71479 -23.11626 -22.17987 -21.51411 -20.23097 -19.50881 -19.01077 -18.58704 -18.16382 -17.77750 -17.30258 -16.83920 -16.78219 -16.11792 -15.70990 -15.59316 -15.30481 -15.12477 -14.84433 -14.61509 -14.60444 -14.45494 -14.16300 -13.91722 -13.81606 -13.66651 -13.48738 -13.42969 -13.42222 -13.13835 -12.89570 -12.85011 -12.80258 -12.64522 -12.44377 -11.99943 -11.82734 -11.66869 -11.54665 -11.48680 -11.43196 -11.18766 -11.11680 -10.71337 -9.79877 -9.55279 -8.85169 -7.75376 -5.18516 -0.72950 0.13617 0.99958 1.31876 1.47909 1.49026 1.57500 1.75372 2.03281 2.51169 2.95550 3.07844 3.29377 3.36227 3.53291 3.56894 3.66128 3.71298 3.80821 3.95850 4.15563 4.22022 4.31258 4.33132 4.38445 4.41767 4.54110 4.57287 4.62822 4.67239 4.69854 4.75647 4.80329 4.89344 4.91876 4.97550 5.02600 5.04776 5.08635 5.11819 5.21746 5.31253 5.38598 5.49934 5.68276 5.86483 5.88018 6.25686 6.34420 6.35128 6.89283 7.13884 7.81640 8.44775 9.26323 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.025601 B = 0.002443 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.462735 B =11459.070306 C =11738.977298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.068 3.932 3 C -0.276 4.276 4 C 0.494 3.506 5 O -0.515 6.515 6 O -0.258 6.258 7 C 0.200 3.800 8 C -0.123 4.123 9 C -0.263 4.263 10 C 0.599 3.401 11 O -0.569 6.569 12 N -0.599 5.599 13 C 0.099 3.901 14 C -0.106 4.106 15 C -0.070 4.070 16 C -0.111 4.111 17 C 0.153 3.847 18 N -0.627 5.627 19 C -0.235 4.235 20 H 0.080 0.920 21 C -0.067 4.067 22 N -0.948 5.948 23 Si 0.976 3.024 24 H -0.291 1.291 25 H -0.294 1.294 26 H -0.268 1.268 27 C 0.147 3.853 28 C 0.134 3.866 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.184 0.816 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.069 0.931 43 H -0.020 1.020 44 H 0.246 0.754 45 H 0.041 0.959 46 H 0.018 0.982 47 H 0.058 0.942 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.322 20.001 -2.920 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.067 3.933 3 C -0.295 4.295 4 C 0.349 3.651 5 O -0.408 6.408 6 O -0.167 6.167 7 C 0.150 3.850 8 C -0.178 4.178 9 C -0.267 4.267 10 C 0.387 3.613 11 O -0.448 6.448 12 N -0.331 5.331 13 C -0.023 4.023 14 C -0.144 4.144 15 C -0.071 4.071 16 C -0.149 4.149 17 C 0.029 3.971 18 N -0.353 5.353 19 C -0.364 4.364 20 H 0.098 0.902 21 C -0.260 4.260 22 N -0.598 5.598 23 Si 0.804 3.196 24 H -0.218 1.218 25 H -0.220 1.220 26 H -0.193 1.193 27 C 0.022 3.978 28 C 0.012 3.988 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.201 0.799 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.087 0.913 43 H -0.002 1.002 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.036 0.964 47 H 0.076 0.924 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.650 20.067 -3.484 21.425 hybrid contribution -0.868 -1.274 -0.200 1.555 sum 5.782 18.793 -3.684 20.004 Atomic orbital electron populations 1.21148 0.87598 1.04746 1.05270 1.20419 0.98420 0.89778 0.84707 1.22262 0.91169 1.01128 1.14933 1.19636 0.89185 0.80406 0.75823 1.90998 1.71702 1.27084 1.51013 1.83396 1.44933 1.14830 1.73506 1.23120 0.90303 0.85681 0.85933 1.21309 1.02229 0.87697 1.06565 1.19671 0.93000 0.94723 1.19344 1.17255 0.78450 0.83295 0.82286 1.90849 1.56234 1.65667 1.32080 1.48677 1.55783 1.22253 1.06430 1.22688 1.00085 0.99860 0.79640 1.22661 0.99901 0.92269 0.99611 1.21368 0.95832 0.96593 0.93308 1.22727 0.96831 0.94284 1.01090 1.21770 0.83184 0.95287 0.96906 1.44935 1.05709 1.03938 1.80703 1.19434 0.90318 0.88774 1.37867 0.90205 1.25574 0.98466 0.98980 1.02964 1.70051 1.16644 1.15943 1.57207 0.85115 0.78258 0.78739 0.77454 1.21847 1.22049 1.19309 1.21282 0.94650 0.84173 0.97722 1.21660 0.96334 0.84777 0.96027 0.87060 0.87588 0.91971 0.79919 0.86785 0.85990 0.88312 0.89138 0.88472 0.89263 0.87633 0.90119 0.90368 0.91269 1.00238 0.94474 0.94079 0.96378 0.92377 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.67 71.24 0.69 -0.88 16 2 C 0.07 1.06 5.93 -19.50 -0.12 0.94 16 3 C -0.28 -4.43 9.64 22.38 0.22 -4.22 16 4 C 0.49 10.88 7.93 68.46 0.54 11.43 16 5 O -0.51 -14.92 17.93 18.69 0.34 -14.58 16 6 O -0.26 -5.10 9.81 25.82 0.25 -4.85 16 7 C 0.20 3.30 7.03 25.53 0.18 3.48 16 8 C -0.12 -1.45 9.80 71.24 0.70 -0.75 16 9 C -0.26 -4.83 4.53 -20.09 -0.09 -4.92 16 10 C 0.60 13.96 4.26 86.69 0.37 14.33 16 11 O -0.57 -18.35 17.44 -4.02 -0.07 -18.42 16 12 N -0.60 -12.66 3.31 -816.61 -2.70 -15.36 16 13 C 0.10 1.41 6.62 86.93 0.58 1.98 16 14 C -0.11 -1.83 5.93 31.56 0.19 -1.64 16 15 C -0.07 -1.91 0.61 -51.87 -0.03 -1.94 16 16 C -0.11 -3.44 5.85 31.56 0.18 -3.26 16 17 C 0.15 7.07 5.85 86.92 0.51 7.58 16 18 N -0.63 -30.44 3.41 -693.05 -2.36 -32.80 16 19 C -0.23 -12.73 10.28 84.04 0.86 -11.87 16 20 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 21 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 22 N -0.95 -55.35 10.10 21.65 0.22 -55.13 16 23 Si 0.98 44.84 29.55 68.60 2.03 46.86 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 C 0.15 5.37 6.51 86.14 0.56 5.93 16 28 C 0.13 3.75 6.02 86.14 0.52 4.26 16 29 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.11 0.84 8.09 -2.39 -0.02 0.82 16 31 H 0.06 1.04 7.18 -2.38 -0.02 1.03 16 32 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 1.29 6.99 -2.39 -0.02 1.27 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.10 0.99 7.70 -2.39 -0.02 0.97 16 38 H 0.09 1.38 8.09 -2.38 -0.02 1.36 16 39 H 0.11 1.56 7.78 -2.39 -0.02 1.54 16 40 H 0.08 2.16 7.94 -2.39 -0.02 2.14 16 41 H 0.08 2.27 7.82 -2.38 -0.02 2.25 16 42 H 0.07 3.71 5.89 -2.39 -0.01 3.69 16 43 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 44 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 45 H 0.04 1.43 7.86 -2.39 -0.02 1.41 16 46 H 0.02 0.69 7.42 -2.39 -0.02 0.67 16 47 H 0.06 1.80 7.44 -2.39 -0.02 1.78 16 48 H 0.06 1.79 7.78 -2.39 -0.02 1.77 16 Total: -1.00 -75.31 387.69 4.99 -70.32 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 0.97 Total: 6.76 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 6.32 Total: 17.20 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -4.85 Total: -103.30 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: 0.52 Total: -37.85 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -75.31 4.99 -70.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041459031.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.361 kcal (2) G-P(sol) polarization free energy of solvation -75.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds