Wall clock time and date at job start Sat Apr 11 2020 07:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35961 * 120.57078 * 2 1 4 4 C 1.40840 * 119.33992 * 180.27432 * 3 2 1 5 5 O 1.21851 * 119.75889 * 179.71104 * 4 3 2 6 6 O 1.34381 * 120.48400 * 359.73151 * 4 3 2 7 7 C 1.33725 * 121.21187 * 0.02562 * 6 4 3 8 8 C 1.50689 * 119.69211 * 179.97438 * 7 6 4 9 9 C 1.37594 * 120.61667 * 0.02562 * 7 6 4 10 10 C 1.47519 * 120.25901 * 179.97438 * 9 7 6 11 11 O 1.21592 * 119.99891 * 89.99856 * 10 9 7 12 12 N 1.34780 * 119.99358 * 269.99901 * 10 9 7 13 13 C 1.46595 * 119.75887 * 0.02562 * 12 10 9 14 14 C 1.53889 * 110.70541 * 227.72645 * 13 12 10 15 15 C 1.51977 * 107.29445 * 308.18379 * 14 13 12 16 16 H 1.09003 * 111.01194 * 303.47537 * 15 14 13 17 17 C 1.53700 * 115.00565 * 175.44319 * 15 14 13 18 18 C 1.55297 * 101.81516 * 206.53024 * 17 15 14 19 19 N 1.48155 * 107.04248 * 22.44298 * 18 17 15 20 20 C 1.36940 * 126.40512 * 185.00284 * 19 18 17 21 21 H 1.07992 * 120.00542 * 180.02562 * 20 19 18 22 22 C 1.38816 * 119.99193 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00405 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99654 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46946 * 59.99902 * 24 22 20 26 26 H 1.48502 * 109.47014 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47127 * 299.99490 * 24 22 20 28 28 C 1.45509 * 107.20398 * 5.00542 * 19 18 17 29 29 H 1.09000 * 108.98766 * 86.35233 * 28 19 18 30 30 C 1.47796 * 119.74929 * 179.97438 * 12 10 9 31 31 H 1.09003 * 109.47381 * 270.24145 * 1 2 3 32 32 H 1.08999 * 109.46501 * 30.24055 * 1 2 3 33 33 H 1.09002 * 109.47122 * 150.23802 * 1 2 3 34 34 H 1.08002 * 120.32847 * 0.02562 * 3 2 1 35 35 H 1.09006 * 109.47521 * 270.02040 * 8 7 6 36 36 H 1.09004 * 109.47267 * 30.02473 * 8 7 6 37 37 H 1.09007 * 109.47312 * 150.01991 * 8 7 6 38 38 H 1.08997 * 109.22820 * 348.03728 * 13 12 10 39 39 H 1.08998 * 109.23316 * 107.41007 * 13 12 10 40 40 H 1.09001 * 109.88982 * 67.62895 * 14 13 12 41 41 H 1.08998 * 109.89040 * 188.65818 * 14 13 12 42 42 H 1.09004 * 110.95546 * 324.66115 * 17 15 14 43 43 H 1.09001 * 110.96018 * 88.39927 * 17 15 14 44 44 H 1.08995 * 109.91976 * 263.09597 * 18 17 15 45 45 H 1.08998 * 110.09066 * 141.88309 * 18 17 15 46 46 H 0.97000 * 120.00129 * 180.02562 * 23 22 20 47 47 H 1.08997 * 110.06665 * 247.98515 * 30 12 10 48 48 H 1.09004 * 110.06305 * 9.55432 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1706 0.0000 4 6 3.6066 1.1404 -0.0059 5 8 4.2340 2.1850 -0.0113 6 8 4.2633 -0.0320 -0.0060 7 6 3.6041 -1.1955 -0.0011 8 6 4.3751 -2.4902 -0.0020 9 6 2.2284 -1.2215 0.0037 10 6 1.5093 -2.5095 0.0085 11 8 1.2166 -3.0384 1.0635 12 7 1.1768 -3.0999 -1.1566 13 6 1.5329 -2.4577 -2.4254 14 6 0.3256 -2.4308 -3.3793 15 6 -0.2151 -3.8486 -3.4638 16 1 0.5597 -4.5438 -3.7870 17 6 -1.5005 -4.0055 -4.2917 18 6 -2.1421 -5.2645 -3.6474 19 7 -1.5807 -5.3873 -2.2819 20 6 -1.8031 -6.4118 -1.4009 21 1 -1.3389 -6.3961 -0.4259 22 6 -2.6253 -7.4707 -1.7611 23 7 -3.1916 -7.4897 -2.9492 24 14 -2.9282 -8.8686 -0.5597 25 1 -3.5539 -8.3327 0.6758 26 1 -3.8355 -9.8670 -1.1805 27 1 -1.6365 -9.5173 -0.2192 28 6 -0.7489 -4.2159 -2.0515 29 1 -1.3737 -3.4055 -1.6759 30 6 0.4568 -4.3906 -1.1455 31 1 -0.3634 0.0043 1.0277 32 1 -0.3632 0.8878 -0.5176 33 1 -0.3633 -0.8921 -0.5101 34 1 1.6733 2.1143 0.0004 35 1 4.5570 -2.8042 -1.0299 36 1 5.3277 -2.3463 0.5079 37 1 3.7983 -3.2570 0.5153 38 1 1.8598 -1.4362 -2.2313 39 1 2.3470 -3.0120 -2.8923 40 1 -0.4422 -1.7639 -2.9870 41 1 0.6406 -2.0933 -4.3667 42 1 -2.1473 -3.1358 -4.1762 43 1 -1.2686 -4.1804 -5.3424 44 1 -1.8922 -6.1494 -4.2326 45 1 -3.2245 -5.1478 -3.5948 46 1 -3.7664 -8.2294 -3.2007 47 1 1.1013 -5.1817 -1.5287 48 1 0.1320 -4.6289 -0.1326 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042147097.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:46 Heat of formation + Delta-G solvation = -45.052650 kcal Electronic energy + Delta-G solvation = -31955.684124 eV Core-core repulsion = 27784.476531 eV Total energy + Delta-G solvation = -4171.207593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.43199 -40.39284 -38.57039 -38.01008 -36.21718 -35.49454 -33.19192 -32.92981 -31.36464 -29.77037 -29.13271 -28.67065 -27.99276 -25.02921 -24.66236 -23.63362 -22.38742 -22.31342 -20.73509 -20.11009 -19.49283 -18.61985 -17.90289 -17.27051 -16.90907 -16.57250 -16.25254 -15.25037 -15.11885 -14.85538 -14.46752 -14.43307 -14.25253 -14.04401 -13.89697 -13.80037 -13.65612 -13.43562 -13.14434 -13.10505 -12.75674 -12.70851 -12.60868 -12.34985 -12.09134 -11.96790 -11.62736 -11.42715 -11.05088 -10.92277 -10.81843 -10.75016 -10.58767 -10.23781 -10.07595 -10.01870 -9.94786 -9.72163 -9.58375 -8.69208 -8.68229 -8.62666 -6.92698 -5.77810 -3.12152 0.07014 1.03920 1.89346 2.38901 2.77889 2.96746 3.38150 3.43104 3.43806 3.75942 3.91182 4.21515 4.40266 4.45031 4.68626 4.75405 4.82379 4.85257 4.93177 5.01008 5.09671 5.24279 5.28540 5.29483 5.36224 5.37633 5.49464 5.53138 5.57516 5.67380 5.75055 5.80089 5.81186 5.91368 5.96580 6.00969 6.06496 6.24799 6.35161 6.46272 6.57087 6.64379 6.75777 6.93916 7.17000 7.31268 7.48496 7.53675 7.75020 8.02075 8.16990 9.12530 9.75661 10.41629 11.34246 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.003057 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.212145 B = 9156.758994 C = 9767.998204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 C -0.280 4.280 4 C 0.499 3.501 5 O -0.476 6.476 6 O -0.256 6.256 7 C 0.183 3.817 8 C -0.121 4.121 9 C -0.251 4.251 10 C 0.574 3.426 11 O -0.525 6.525 12 N -0.594 5.594 13 C 0.107 3.893 14 C -0.119 4.119 15 C -0.112 4.112 16 H 0.078 0.922 17 C -0.137 4.137 18 C 0.177 3.823 19 N -0.592 5.592 20 C -0.232 4.232 21 H 0.079 0.921 22 C -0.004 4.004 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.157 3.843 29 H 0.024 0.976 30 C 0.115 3.885 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.164 0.836 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.038 0.962 46 H 0.253 0.747 47 H 0.075 0.925 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.541 13.458 -0.223 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 C -0.299 4.299 4 C 0.352 3.648 5 O -0.366 6.366 6 O -0.165 6.165 7 C 0.134 3.866 8 C -0.177 4.177 9 C -0.255 4.255 10 C 0.360 3.640 11 O -0.401 6.401 12 N -0.327 5.327 13 C -0.016 4.016 14 C -0.158 4.158 15 C -0.132 4.132 16 H 0.096 0.904 17 C -0.176 4.176 18 C 0.053 3.947 19 N -0.317 5.317 20 C -0.360 4.360 21 H 0.097 0.903 22 C -0.201 4.201 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.048 3.952 29 H 0.041 0.959 30 C -0.007 4.007 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.181 0.819 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.734 13.444 0.330 17.847 hybrid contribution -0.441 -0.614 0.521 0.918 sum 11.293 12.830 0.851 17.113 Atomic orbital electron populations 1.21101 0.88850 1.04592 1.04419 1.20319 0.97645 0.90511 0.85547 1.22231 0.92553 1.00262 1.14857 1.19276 0.88423 0.80715 0.76418 1.91008 1.70888 1.25756 1.48948 1.83398 1.44632 1.14595 1.73878 1.22770 0.90317 0.85529 0.88031 1.21165 1.01548 0.89452 1.05489 1.19888 0.92726 0.95788 1.17114 1.17562 0.79120 0.83114 0.84207 1.90850 1.54235 1.64416 1.30599 1.48323 1.56399 1.22873 1.05140 1.21745 0.97905 0.97523 0.84416 1.21804 0.97103 0.98166 0.98687 1.22274 0.97616 0.95028 0.98309 0.90357 1.22714 0.96092 1.00303 0.98448 1.21548 0.95905 0.92809 0.84458 1.44171 1.52735 1.20791 1.13986 1.18979 1.24735 0.97161 0.95101 0.90308 1.24784 0.99584 0.98681 0.97027 1.69928 1.35267 1.32380 1.19200 0.86230 0.77766 0.81855 0.80119 1.21083 1.21615 1.21065 1.20996 0.90425 0.91422 0.92389 0.95874 1.21850 0.93670 0.82140 1.03008 0.88803 0.89625 0.89940 0.81873 0.87717 0.88451 0.87672 0.90750 0.91335 0.91358 0.90695 0.92526 0.92182 0.92631 0.94367 0.93644 0.90698 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.67 36.01 0.35 -0.85 16 2 C 0.06 0.62 5.66 -104.05 -0.59 0.03 16 3 C -0.28 -2.81 9.65 -39.41 -0.38 -3.19 16 4 C 0.50 6.15 7.93 31.72 0.25 6.40 16 5 O -0.48 -7.28 17.93 -19.60 -0.35 -7.63 16 6 O -0.26 -2.87 9.81 -17.63 -0.17 -3.04 16 7 C 0.18 1.80 7.03 -34.55 -0.24 1.56 16 8 C -0.12 -0.88 9.79 36.00 0.35 -0.52 16 9 C -0.25 -2.78 3.61 -104.96 -0.38 -3.16 16 10 C 0.57 7.76 4.09 -12.48 -0.05 7.71 16 11 O -0.52 -9.12 16.45 5.28 0.09 -9.04 16 12 N -0.59 -7.73 3.01 -173.95 -0.52 -8.25 16 13 C 0.11 1.09 6.23 -3.53 -0.02 1.06 16 14 C -0.12 -1.32 5.72 -26.79 -0.15 -1.47 16 15 C -0.11 -1.69 2.62 -89.52 -0.23 -1.93 16 16 H 0.08 1.22 8.13 -51.93 -0.42 0.79 16 17 C -0.14 -2.29 6.54 -25.15 -0.16 -2.45 16 18 C 0.18 4.00 5.45 -1.91 -0.01 3.99 16 19 N -0.59 -13.97 3.35 -162.88 -0.55 -14.52 16 20 C -0.23 -6.11 9.88 -15.06 -0.15 -6.26 16 21 H 0.08 2.02 7.41 -52.49 -0.39 1.63 16 22 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 23 N -0.92 -26.05 10.43 55.49 0.58 -25.47 16 24 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.16 2.90 2.75 -67.80 -0.19 2.72 16 29 H 0.02 0.47 7.94 -51.93 -0.41 0.06 16 30 C 0.12 1.92 5.69 -3.93 -0.02 1.89 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.08 0.88 7.18 -51.93 -0.37 0.50 16 34 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.90 6.99 -51.93 -0.36 0.54 16 38 H 0.07 0.65 6.07 -51.93 -0.32 0.34 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.77 7.99 -51.93 -0.41 0.36 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 1.40 7.21 -51.93 -0.37 1.03 16 45 H 0.04 0.96 7.76 -51.93 -0.40 0.56 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.09 1.81 6.76 -51.93 -0.35 1.46 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -32.39 382.67 -9.09 -41.48 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.18 Total: -1.16 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -1.73 Total: 5.33 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.49 Total: -48.24 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.44 Total: -19.71 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.39 -9.09 -41.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042147097.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.576 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds