Wall clock time and date at job start Sat Apr 11 2020 07:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35963 * 120.56712 * 2 1 4 4 C 1.40844 * 119.33567 * 179.97438 * 3 2 1 5 5 O 1.21857 * 119.75326 * 180.02562 * 4 3 2 6 6 O 1.34377 * 120.48965 * 359.97438 * 4 3 2 7 7 C 1.33718 * 121.20943 * 0.02562 * 6 4 3 8 8 C 1.50699 * 119.69323 * 179.97438 * 7 6 4 9 9 C 1.37590 * 120.61865 * 359.97438 * 7 6 4 10 10 C 1.47525 * 120.25990 * 180.27580 * 9 7 6 11 11 O 1.21601 * 120.00018 * 269.72207 * 10 9 7 12 12 N 1.34776 * 119.99957 * 89.72125 * 10 9 7 13 13 C 1.47152 * 121.21462 * 359.72388 * 12 10 9 14 14 C 1.53332 * 107.71874 * 122.68703 * 13 12 10 15 15 C 1.53094 * 110.49690 * 57.57211 * 14 13 12 16 16 H 1.09002 * 113.06156 * 70.86695 * 15 14 13 17 17 C 1.56032 * 106.39626 * 195.29244 * 15 14 13 18 18 C 1.54503 * 102.61151 * 78.38156 * 17 15 14 19 19 N 1.47434 * 107.15019 * 22.84075 * 18 17 15 20 20 C 1.36933 * 126.06306 * 181.58576 * 19 18 17 21 21 H 1.08001 * 120.00408 * 174.20763 * 20 19 18 22 22 C 1.38815 * 120.00072 * 354.21299 * 20 19 18 23 23 N 1.31620 * 119.99669 * 6.72192 * 22 20 19 24 24 Si 1.86797 * 120.00144 * 186.71860 * 22 20 19 25 25 H 1.48502 * 109.47043 * 94.98572 * 24 22 20 26 26 H 1.48500 * 109.47387 * 214.98615 * 24 22 20 27 27 H 1.48497 * 109.47424 * 334.98756 * 24 22 20 28 28 C 1.46473 * 107.87894 * 1.63077 * 19 18 17 29 29 H 1.08996 * 108.42153 * 89.22934 * 28 19 18 30 30 C 1.46751 * 121.21214 * 180.02562 * 12 10 9 31 31 H 1.08999 * 109.47129 * 270.02432 * 1 2 3 32 32 H 1.08994 * 109.47340 * 30.03088 * 1 2 3 33 33 H 1.09003 * 109.46682 * 150.02726 * 1 2 3 34 34 H 1.08003 * 120.32887 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.46858 * 270.00050 * 8 7 6 36 36 H 1.09002 * 109.47042 * 29.99933 * 8 7 6 37 37 H 1.09004 * 109.47223 * 150.00078 * 8 7 6 38 38 H 1.09000 * 109.75935 * 242.33913 * 13 12 10 39 39 H 1.09002 * 109.76119 * 3.09400 * 13 12 10 40 40 H 1.09004 * 109.39737 * 297.24937 * 14 13 12 41 41 H 1.09001 * 109.16226 * 177.74685 * 14 13 12 42 42 H 1.09002 * 110.78046 * 320.10320 * 17 15 14 43 43 H 1.08990 * 110.78072 * 196.66029 * 17 15 14 44 44 H 1.09004 * 109.90322 * 263.46526 * 18 17 15 45 45 H 1.08991 * 109.90515 * 142.22326 * 18 17 15 46 46 H 0.97003 * 120.00092 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.22912 * 352.83335 * 30 12 10 48 48 H 1.08999 * 109.22714 * 112.20241 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6065 1.1404 0.0005 5 8 4.2339 2.1851 0.0010 6 8 4.2633 -0.0319 0.0016 7 6 3.6042 -1.1954 0.0016 8 6 4.3752 -2.4902 0.0022 9 6 2.2285 -1.2215 0.0011 10 6 1.5094 -2.5095 0.0073 11 8 1.2090 -3.0432 -1.0433 12 7 1.1853 -3.0948 1.1773 13 6 1.5409 -2.4756 2.4640 14 6 0.2456 -2.2772 3.2601 15 6 -0.4761 -3.6137 3.4516 16 1 0.0361 -4.2799 4.1459 17 6 -1.9293 -3.2689 3.9030 18 6 -2.6089 -2.8677 2.5747 19 7 -1.8373 -3.4933 1.4853 20 6 -2.0857 -3.3649 0.1448 21 1 -1.4017 -3.7908 -0.5744 22 6 -3.2165 -2.6872 -0.2898 23 7 -3.9788 -2.0553 0.5773 24 14 -3.6562 -2.6720 -2.1052 25 1 -4.6308 -3.7563 -2.3876 26 1 -4.2584 -1.3611 -2.4578 27 1 -2.4292 -2.8864 -2.9137 28 6 -0.7587 -4.2775 2.0910 29 1 -1.1299 -5.2845 2.2812 30 6 0.4707 -4.3760 1.2145 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8896 -0.5143 33 1 -0.3633 -0.8903 -0.5134 34 1 1.6731 2.1144 -0.0004 35 1 4.5615 -2.8025 -1.0253 36 1 5.3256 -2.3468 0.5164 37 1 3.7963 -3.2576 0.5160 38 1 2.2178 -3.1300 3.0132 39 1 2.0197 -1.5121 2.2894 40 1 -0.4078 -1.5896 2.7230 41 1 0.4865 -1.8557 4.2360 42 1 -1.9287 -2.4346 4.6045 43 1 -2.4163 -4.1414 4.3384 44 1 -2.5953 -1.7834 2.4637 45 1 -3.6360 -3.2319 2.5586 46 1 -4.7688 -1.5814 0.2736 47 1 0.1696 -4.6486 0.2030 48 1 1.1335 -5.1453 1.6106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042147098.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:49 Heat of formation + Delta-G solvation = -44.431280 kcal Electronic energy + Delta-G solvation = -33304.252267 eV Core-core repulsion = 29133.071618 eV Total energy + Delta-G solvation = -4171.180648 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.16560 -40.14547 -38.40355 -37.75946 -35.85775 -35.09940 -32.96272 -32.86620 -31.25724 -29.46087 -28.68620 -28.47246 -27.87731 -24.93907 -24.54344 -23.62383 -22.67190 -21.94821 -20.68957 -20.05840 -18.68704 -18.34059 -17.66071 -17.03951 -16.64361 -16.60724 -15.94239 -15.15605 -14.91665 -14.71676 -14.35111 -14.17282 -14.04709 -13.86920 -13.76341 -13.43232 -13.25574 -13.21486 -12.92121 -12.87734 -12.62478 -12.46642 -12.24612 -12.06662 -11.74024 -11.66772 -11.49860 -11.38133 -11.03709 -10.87891 -10.77260 -10.39446 -10.31982 -10.17613 -9.94951 -9.94659 -9.75958 -9.59033 -9.56206 -8.59515 -8.42200 -8.31648 -6.84233 -5.73436 -3.04550 0.34383 1.31807 2.13492 2.74027 3.08042 3.27860 3.40390 3.47875 3.52243 4.01470 4.22991 4.49415 4.51910 4.72955 4.94662 4.95807 4.98929 5.07935 5.08320 5.22777 5.39793 5.41909 5.46759 5.53119 5.58872 5.61572 5.65641 5.70286 5.81898 5.86817 5.87484 5.94008 6.03752 6.14573 6.19779 6.21954 6.33711 6.36532 6.52152 6.56321 6.63727 6.82584 6.94479 7.00063 7.41086 7.52268 7.59410 7.64526 7.83900 8.21783 8.39053 9.21115 9.82006 10.47167 11.38815 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.011266 B = 0.004946 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.811972 B = 5659.848776 C = 6548.009803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.069 3.931 3 C -0.288 4.288 4 C 0.500 3.500 5 O -0.482 6.482 6 O -0.258 6.258 7 C 0.170 3.830 8 C -0.114 4.114 9 C -0.240 4.240 10 C 0.584 3.416 11 O -0.519 6.519 12 N -0.584 5.584 13 C 0.109 3.891 14 C -0.121 4.121 15 C -0.102 4.102 16 H 0.076 0.924 17 C -0.144 4.144 18 C 0.178 3.822 19 N -0.587 5.587 20 C -0.217 4.217 21 H 0.083 0.917 22 C -0.003 4.003 23 N -0.921 5.921 24 Si 0.895 3.105 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.277 1.277 28 C 0.154 3.846 29 H 0.028 0.972 30 C 0.112 3.888 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.162 0.838 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.041 0.959 45 H 0.043 0.957 46 H 0.250 0.750 47 H 0.098 0.902 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.188 -1.481 6.521 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.068 3.932 3 C -0.307 4.307 4 C 0.353 3.647 5 O -0.373 6.373 6 O -0.167 6.167 7 C 0.120 3.880 8 C -0.170 4.170 9 C -0.244 4.244 10 C 0.370 3.630 11 O -0.395 6.395 12 N -0.317 5.317 13 C -0.014 4.014 14 C -0.160 4.160 15 C -0.122 4.122 16 H 0.094 0.906 17 C -0.183 4.183 18 C 0.054 3.946 19 N -0.313 5.313 20 C -0.345 4.345 21 H 0.100 0.900 22 C -0.199 4.199 23 N -0.568 5.568 24 Si 0.726 3.274 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.203 1.203 28 C 0.046 3.954 29 H 0.045 0.955 30 C -0.010 4.010 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.180 0.820 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.116 0.884 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.345 -1.146 5.788 14.591 hybrid contribution -0.710 0.299 -0.868 1.161 sum 12.635 -0.847 4.919 13.585 Atomic orbital electron populations 1.21116 0.87566 1.05399 1.04656 1.20527 0.98298 0.90304 0.84086 1.22234 0.92396 1.00401 1.15661 1.19286 0.88427 0.80627 0.76352 1.90987 1.70952 1.25768 1.49579 1.83352 1.44674 1.14608 1.74111 1.22697 0.90336 0.85462 0.89483 1.21076 1.01029 0.89415 1.05518 1.19991 0.92524 0.96133 1.15781 1.17311 0.78851 0.82871 0.83935 1.90838 1.53770 1.63902 1.30980 1.47807 1.55868 1.23087 1.04900 1.21777 0.97386 0.97813 0.84409 1.21917 0.96170 0.98593 0.99275 1.22387 0.96264 0.96044 0.97471 0.90579 1.23168 0.95325 1.00071 0.99711 1.21221 0.93975 0.96907 0.82510 1.44272 1.29662 1.55234 1.02106 1.19038 1.04770 1.29941 0.80720 0.89972 1.24684 0.97654 1.00412 0.97172 1.69961 1.17328 1.37662 1.31879 0.86319 0.78509 0.76990 0.85575 1.21754 1.21940 1.20253 1.20688 0.88911 0.95055 0.90773 0.95458 1.21498 0.92982 0.82927 1.03638 0.88726 0.90343 0.88430 0.82025 0.87839 0.88761 0.88234 0.91397 0.90929 0.90002 0.91999 0.92327 0.92701 0.94034 0.93874 0.93975 0.88403 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.67 36.00 0.35 -1.76 16 2 C 0.07 1.01 5.89 -104.05 -0.61 0.40 16 3 C -0.29 -3.99 9.64 -39.41 -0.38 -4.37 16 4 C 0.50 7.57 7.93 31.72 0.25 7.82 16 5 O -0.48 -8.58 17.93 -19.60 -0.35 -8.93 16 6 O -0.26 -3.50 9.81 -17.60 -0.17 -3.67 16 7 C 0.17 2.07 7.02 -34.55 -0.24 1.82 16 8 C -0.11 -0.99 9.80 36.01 0.35 -0.63 16 9 C -0.24 -3.45 3.65 -104.96 -0.38 -3.83 16 10 C 0.58 9.61 4.13 -12.47 -0.05 9.56 16 11 O -0.52 -10.62 16.56 5.28 0.09 -10.54 16 12 N -0.58 -8.63 2.93 -175.00 -0.51 -9.14 16 13 C 0.11 1.30 6.38 -3.51 -0.02 1.28 16 14 C -0.12 -1.62 5.06 -26.51 -0.13 -1.75 16 15 C -0.10 -1.46 3.68 -88.43 -0.33 -1.79 16 16 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 17 C -0.14 -2.35 6.33 -24.32 -0.15 -2.50 16 18 C 0.18 3.86 4.62 -2.74 -0.01 3.85 16 19 N -0.59 -13.02 3.20 -164.39 -0.53 -13.55 16 20 C -0.22 -5.50 9.71 -15.06 -0.15 -5.65 16 21 H 0.08 2.17 6.48 -52.49 -0.34 1.83 16 22 C 0.00 -0.08 5.48 -17.43 -0.10 -0.18 16 23 N -0.92 -25.40 10.43 55.49 0.58 -24.82 16 24 Si 0.90 21.94 29.56 -169.99 -5.02 16.92 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 C 0.15 2.70 2.97 -68.28 -0.20 2.50 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 C 0.11 1.79 5.68 -4.76 -0.03 1.77 16 31 H 0.09 1.52 7.86 -51.93 -0.41 1.11 16 32 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 33 H 0.10 1.95 7.18 -51.93 -0.37 1.58 16 34 H 0.16 2.00 8.06 -52.48 -0.42 1.58 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.86 6.99 -51.93 -0.36 0.50 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.82 6.35 -51.93 -0.33 0.49 16 40 H 0.08 1.37 6.57 -51.93 -0.34 1.02 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.87 7.97 -51.93 -0.41 0.45 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 1.00 7.20 -51.93 -0.37 0.63 16 45 H 0.04 1.08 7.45 -51.93 -0.39 0.69 16 46 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 47 H 0.10 1.88 5.52 -51.93 -0.29 1.59 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -31.44 378.50 -9.03 -40.47 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.98 Total: 1.02 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -1.84 Total: 6.54 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.46 Total: -47.51 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.44 Total: -23.15 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.44 -9.03 -40.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042147098.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.959 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds