Wall clock time and date at job start Sat Apr 11 2020 07:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35964 * 120.56350 * 2 1 4 4 C 1.40844 * 119.33527 * 180.02562 * 3 2 1 5 5 O 1.21856 * 119.75597 * 180.02562 * 4 3 2 6 6 O 1.34380 * 120.48717 * 359.72542 * 4 3 2 7 7 C 1.33722 * 121.20719 * 0.56335 * 6 4 3 8 8 C 1.50703 * 119.69118 * 179.71331 * 7 6 4 9 9 C 1.37591 * 120.61755 * 359.43400 * 7 6 4 10 10 C 1.47518 * 120.25709 * 180.29712 * 9 7 6 11 11 O 1.21606 * 119.99931 * 90.00083 * 10 9 7 12 12 N 1.34775 * 120.00378 * 270.00378 * 10 9 7 13 13 C 1.46595 * 119.75072 * 0.02562 * 12 10 9 14 14 C 1.53877 * 110.71377 * 132.26362 * 13 12 10 15 15 C 1.51976 * 107.29055 * 51.80549 * 14 13 12 16 16 H 1.09005 * 111.01730 * 57.33420 * 15 14 13 17 17 C 1.53702 * 115.00513 * 184.55426 * 15 14 13 18 18 C 1.55301 * 101.81554 * 153.46503 * 17 15 14 19 19 N 1.48159 * 107.03927 * 337.55285 * 18 17 15 20 20 C 1.36941 * 126.39546 * 175.00688 * 19 18 17 21 21 H 1.08001 * 119.99776 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99885 * 0.02562 * 20 19 18 23 23 N 1.31616 * 120.00095 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99619 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47160 * 90.00329 * 24 22 20 26 26 H 1.48504 * 109.46963 * 210.00227 * 24 22 20 27 27 H 1.48495 * 109.47326 * 330.00378 * 24 22 20 28 28 C 1.45502 * 107.20885 * 355.00251 * 19 18 17 29 29 H 1.09001 * 109.57115 * 273.36993 * 28 19 18 30 30 C 1.47795 * 119.75232 * 179.73018 * 12 10 9 31 31 H 1.09001 * 109.46850 * 269.97322 * 1 2 3 32 32 H 1.08999 * 109.47306 * 29.97881 * 1 2 3 33 33 H 1.09007 * 109.46832 * 149.97954 * 1 2 3 34 34 H 1.07996 * 120.33442 * 0.02562 * 3 2 1 35 35 H 1.09002 * 109.47152 * 269.72452 * 8 7 6 36 36 H 1.09001 * 109.46980 * 149.72552 * 8 7 6 37 37 H 1.09004 * 109.47113 * 29.72533 * 8 7 6 38 38 H 1.09007 * 109.22616 * 252.58479 * 13 12 10 39 39 H 1.09001 * 109.22804 * 11.98354 * 13 12 10 40 40 H 1.09002 * 109.89595 * 171.25383 * 14 13 12 41 41 H 1.09000 * 109.89121 * 292.28247 * 14 13 12 42 42 H 1.09003 * 110.96182 * 271.59063 * 17 15 14 43 43 H 1.09001 * 110.96111 * 35.29491 * 17 15 14 44 44 H 1.08994 * 109.92448 * 96.90096 * 18 17 15 45 45 H 1.09001 * 109.91497 * 218.00899 * 18 17 15 46 46 H 0.96999 * 120.00178 * 179.97438 * 23 22 20 47 47 H 1.08998 * 110.06886 * 350.46656 * 30 12 10 48 48 H 1.09002 * 110.06502 * 112.03691 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6065 1.1405 -0.0005 5 8 4.2338 2.1852 -0.0001 6 8 4.2633 -0.0318 0.0045 7 6 3.6041 -1.1953 -0.0011 8 6 4.3753 -2.4901 -0.0018 9 6 2.2285 -1.2214 -0.0006 10 6 1.5095 -2.5094 -0.0002 11 8 1.2135 -3.0403 1.0531 12 7 1.1805 -3.0980 -1.1672 13 6 1.5405 -2.4537 -2.4337 14 6 2.1961 -3.4641 -3.3914 15 6 1.2723 -4.6676 -3.4798 16 1 0.2778 -4.3733 -3.8152 17 6 1.8123 -5.8415 -4.3121 18 6 1.0771 -7.0502 -3.6717 19 7 0.6789 -6.6414 -2.3045 20 6 -0.0763 -7.3713 -1.4257 21 1 -0.3065 -6.9708 -0.4494 22 6 -0.5459 -8.6259 -1.7896 23 7 -0.2649 -9.1141 -2.9792 24 14 -1.5766 -9.6211 -0.5911 25 1 -3.0130 -9.3002 -0.7884 26 1 -1.3554 -11.0697 -0.8323 27 1 -1.1808 -9.2848 0.8000 28 6 1.2401 -5.3197 -2.0697 29 1 2.2571 -5.4170 -1.6899 30 6 0.4655 -4.3915 -1.1603 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8899 -0.5142 34 1 1.6731 2.1144 0.0004 35 1 4.5608 -2.8020 -1.0296 36 1 3.7967 -3.2578 0.5121 37 1 5.3261 -2.3470 0.5118 38 1 0.6415 -2.0492 -2.8990 39 1 2.2395 -1.6408 -2.2370 40 1 2.3167 -3.0160 -4.3777 41 1 3.1673 -3.7685 -3.0013 42 1 1.5413 -5.7321 -5.3623 43 1 2.8922 -5.9362 -4.1980 44 1 0.1922 -7.2995 -4.2573 45 1 1.7459 -7.9097 -3.6256 46 1 -0.5927 -9.9909 -3.2334 47 1 0.4375 -4.7980 -0.1493 48 1 -0.5478 -4.2606 -1.5402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042147100.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:55 Heat of formation + Delta-G solvation = -45.088831 kcal Electronic energy + Delta-G solvation = -31960.342563 eV Core-core repulsion = 27789.133401 eV Total energy + Delta-G solvation = -4171.209162 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.43343 -40.39614 -38.57776 -38.01530 -36.21891 -35.50238 -33.14718 -32.97069 -31.37438 -29.82308 -29.15582 -28.66945 -27.97407 -25.03568 -24.66376 -23.62426 -22.38139 -22.33683 -20.73712 -20.11363 -19.52244 -18.59351 -17.91848 -17.27380 -16.89548 -16.58270 -16.25127 -15.26614 -15.10282 -14.89178 -14.49580 -14.40567 -14.14716 -14.05631 -13.92150 -13.85915 -13.64739 -13.51667 -13.16919 -13.04594 -12.77639 -12.67728 -12.60806 -12.35660 -12.09083 -11.99546 -11.62710 -11.42567 -11.05860 -10.92816 -10.82237 -10.78072 -10.59246 -10.22541 -10.06090 -10.01848 -9.95941 -9.73313 -9.58921 -8.70400 -8.68239 -8.61885 -6.93523 -5.78565 -3.12934 0.06855 1.03730 1.89611 2.39922 2.77613 2.96208 3.36990 3.43364 3.44670 3.76719 3.90014 4.21175 4.39359 4.44464 4.68043 4.74448 4.83376 4.87248 4.96310 5.00955 5.09423 5.17345 5.27316 5.30546 5.34553 5.37411 5.52690 5.54407 5.57098 5.66775 5.72711 5.76716 5.78998 5.89989 5.96490 6.00143 6.05462 6.24913 6.34686 6.45674 6.56852 6.63829 6.76194 6.93018 7.17035 7.31442 7.48101 7.53192 7.74688 8.02288 8.16157 9.11902 9.74999 10.40769 11.33583 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.017983 B = 0.003061 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.690607 B = 9145.533288 C = 9751.436129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.061 3.939 3 C -0.280 4.280 4 C 0.499 3.501 5 O -0.476 6.476 6 O -0.255 6.255 7 C 0.187 3.813 8 C -0.123 4.123 9 C -0.253 4.253 10 C 0.575 3.425 11 O -0.525 6.525 12 N -0.594 5.594 13 C 0.108 3.892 14 C -0.120 4.120 15 C -0.112 4.112 16 H 0.078 0.922 17 C -0.138 4.138 18 C 0.177 3.823 19 N -0.591 5.591 20 C -0.231 4.231 21 H 0.080 0.920 22 C -0.004 4.004 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.158 3.842 29 H 0.024 0.976 30 C 0.115 3.885 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.163 0.837 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.038 0.962 46 H 0.253 0.747 47 H 0.095 0.905 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.219 17.010 -0.134 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.059 3.941 3 C -0.300 4.300 4 C 0.351 3.649 5 O -0.366 6.366 6 O -0.164 6.164 7 C 0.137 3.863 8 C -0.178 4.178 9 C -0.258 4.258 10 C 0.360 3.640 11 O -0.401 6.401 12 N -0.327 5.327 13 C -0.015 4.015 14 C -0.158 4.158 15 C -0.132 4.132 16 H 0.096 0.904 17 C -0.176 4.176 18 C 0.053 3.947 19 N -0.316 5.316 20 C -0.359 4.359 21 H 0.098 0.902 22 C -0.201 4.201 23 N -0.567 5.567 24 Si 0.740 3.260 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.205 1.205 28 C 0.049 3.951 29 H 0.041 0.959 30 C -0.007 4.007 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.181 0.819 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.113 0.887 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.442 16.985 0.431 17.840 hybrid contribution -0.737 -0.456 0.492 0.997 sum 4.704 16.528 0.923 17.209 Atomic orbital electron populations 1.21069 0.88995 1.04358 1.04326 1.20294 0.97552 0.90543 0.85706 1.22219 0.92586 1.00211 1.14946 1.19279 0.88428 0.80741 0.76428 1.91009 1.70899 1.25762 1.48930 1.83409 1.44626 1.14589 1.73792 1.22822 0.90363 0.85524 0.87547 1.21205 1.01610 0.89346 1.05672 1.19866 0.92737 0.95739 1.17423 1.17559 0.79038 0.83202 0.84182 1.90854 1.54211 1.64262 1.30791 1.48311 1.56535 1.22711 1.05142 1.21737 1.00087 0.95267 0.84453 1.21817 0.99160 0.96131 0.98709 1.22270 0.98868 0.93809 0.98274 0.90361 1.22732 0.99548 0.96917 0.98437 1.21540 0.97130 0.91585 0.84430 1.44160 1.60702 1.12868 1.13868 1.19027 1.24326 0.97474 0.95106 0.90244 1.24782 1.00758 0.97512 0.97034 1.69935 1.49358 1.18347 1.19090 0.86154 0.80104 0.79487 0.80268 1.21548 1.21670 1.20548 1.20854 0.95371 0.86569 0.92332 0.95913 1.21741 0.95217 0.80758 1.03002 0.88856 0.89686 0.90154 0.81917 0.87566 0.87545 0.88378 0.91297 0.90861 0.90675 0.91383 0.92200 0.92530 0.92630 0.94376 0.93691 0.88711 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 9.67 36.01 0.35 -0.70 16 2 C 0.06 0.59 5.93 -104.06 -0.62 -0.03 16 3 C -0.28 -2.74 9.64 -39.41 -0.38 -3.12 16 4 C 0.50 6.15 7.93 31.72 0.25 6.40 16 5 O -0.48 -7.29 17.93 -19.60 -0.35 -7.64 16 6 O -0.26 -2.93 9.81 -17.62 -0.17 -3.10 16 7 C 0.19 1.92 6.73 -34.54 -0.23 1.69 16 8 C -0.12 -1.02 9.80 36.01 0.35 -0.67 16 9 C -0.25 -2.81 3.64 -104.97 -0.38 -3.19 16 10 C 0.57 7.78 4.09 -12.48 -0.05 7.73 16 11 O -0.52 -9.14 16.45 5.27 0.09 -9.05 16 12 N -0.59 -7.74 3.02 -174.27 -0.53 -8.26 16 13 C 0.11 1.09 6.23 -3.53 -0.02 1.07 16 14 C -0.12 -1.30 5.72 -26.80 -0.15 -1.45 16 15 C -0.11 -1.68 2.61 -89.51 -0.23 -1.91 16 16 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 17 C -0.14 -2.28 6.54 -25.15 -0.16 -2.45 16 18 C 0.18 3.99 5.45 -1.91 -0.01 3.97 16 19 N -0.59 -13.88 3.35 -163.18 -0.55 -14.43 16 20 C -0.23 -6.07 9.88 -15.06 -0.15 -6.22 16 21 H 0.08 2.04 7.41 -52.49 -0.39 1.65 16 22 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 23 N -0.92 -25.98 10.43 55.49 0.58 -25.40 16 24 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 C 0.16 2.89 2.74 -68.07 -0.19 2.71 16 29 H 0.02 0.45 7.93 -51.93 -0.41 0.04 16 30 C 0.11 1.91 5.66 -4.20 -0.02 1.89 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.08 0.73 7.18 -51.93 -0.37 0.35 16 34 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 1.06 6.99 -51.93 -0.36 0.70 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.07 0.64 6.05 -51.93 -0.31 0.32 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.73 7.99 -51.93 -0.41 0.31 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.88 8.12 -51.93 -0.42 0.45 16 44 H 0.06 1.40 7.21 -51.93 -0.37 1.02 16 45 H 0.04 0.96 7.77 -51.93 -0.40 0.55 16 46 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.09 1.81 6.75 -51.93 -0.35 1.46 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -32.26 382.60 -9.11 -41.37 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.18 Total: -1.27 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -1.75 Total: 5.50 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.49 Total: -48.09 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.44 Total: -19.79 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.26 -9.11 -41.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042147100.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.719 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds