Wall clock time and date at job start Sat Apr 11 2020 07:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35964 * 120.56350 * 2 1 4 4 C 1.40844 * 119.33527 * 180.02562 * 3 2 1 5 5 O 1.21856 * 119.75597 * 180.02562 * 4 3 2 6 6 O 1.34380 * 120.48717 * 359.72542 * 4 3 2 7 7 C 1.33722 * 121.20719 * 0.56335 * 6 4 3 8 8 C 1.50703 * 119.69118 * 179.71331 * 7 6 4 9 9 C 1.37591 * 120.61755 * 359.43400 * 7 6 4 10 10 C 1.47518 * 120.25709 * 180.29712 * 9 7 6 11 11 O 1.21606 * 119.99931 * 90.00083 * 10 9 7 12 12 N 1.34775 * 120.00378 * 270.00378 * 10 9 7 13 13 C 1.46595 * 119.75072 * 0.02562 * 12 10 9 14 14 C 1.53877 * 110.71377 * 132.26362 * 13 12 10 15 15 C 1.51976 * 107.29055 * 51.80549 * 14 13 12 16 16 H 1.09005 * 111.01730 * 57.33420 * 15 14 13 17 17 C 1.53702 * 115.00513 * 184.55426 * 15 14 13 18 18 C 1.55301 * 101.81554 * 153.46503 * 17 15 14 19 19 N 1.48159 * 107.03927 * 337.55285 * 18 17 15 20 20 C 1.36941 * 126.39546 * 175.00688 * 19 18 17 21 21 H 1.08001 * 119.99776 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99885 * 0.02562 * 20 19 18 23 23 N 1.31616 * 120.00095 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99619 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47160 * 90.00329 * 24 22 20 26 26 H 1.48504 * 109.46963 * 210.00227 * 24 22 20 27 27 H 1.48495 * 109.47326 * 330.00378 * 24 22 20 28 28 C 1.45502 * 107.20885 * 355.00251 * 19 18 17 29 29 H 1.09001 * 109.57115 * 273.36993 * 28 19 18 30 30 C 1.47795 * 119.75232 * 179.73018 * 12 10 9 31 31 H 1.09001 * 109.46850 * 269.97322 * 1 2 3 32 32 H 1.08999 * 109.47306 * 29.97881 * 1 2 3 33 33 H 1.09007 * 109.46832 * 149.97954 * 1 2 3 34 34 H 1.07996 * 120.33442 * 0.02562 * 3 2 1 35 35 H 1.09002 * 109.47152 * 269.72452 * 8 7 6 36 36 H 1.09001 * 109.46980 * 149.72552 * 8 7 6 37 37 H 1.09004 * 109.47113 * 29.72533 * 8 7 6 38 38 H 1.09007 * 109.22616 * 252.58479 * 13 12 10 39 39 H 1.09001 * 109.22804 * 11.98354 * 13 12 10 40 40 H 1.09002 * 109.89595 * 171.25383 * 14 13 12 41 41 H 1.09000 * 109.89121 * 292.28247 * 14 13 12 42 42 H 1.09003 * 110.96182 * 271.59063 * 17 15 14 43 43 H 1.09001 * 110.96111 * 35.29491 * 17 15 14 44 44 H 1.08994 * 109.92448 * 96.90096 * 18 17 15 45 45 H 1.09001 * 109.91497 * 218.00899 * 18 17 15 46 46 H 0.96999 * 120.00178 * 179.97438 * 23 22 20 47 47 H 1.08998 * 110.06886 * 350.46656 * 30 12 10 48 48 H 1.09002 * 110.06502 * 112.03691 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6065 1.1405 -0.0005 5 8 4.2338 2.1852 -0.0001 6 8 4.2633 -0.0318 0.0045 7 6 3.6041 -1.1953 -0.0011 8 6 4.3753 -2.4901 -0.0018 9 6 2.2285 -1.2214 -0.0006 10 6 1.5095 -2.5094 -0.0002 11 8 1.2135 -3.0403 1.0531 12 7 1.1805 -3.0980 -1.1672 13 6 1.5405 -2.4537 -2.4337 14 6 2.1961 -3.4641 -3.3914 15 6 1.2723 -4.6676 -3.4798 16 1 0.2778 -4.3733 -3.8152 17 6 1.8123 -5.8415 -4.3121 18 6 1.0771 -7.0502 -3.6717 19 7 0.6789 -6.6414 -2.3045 20 6 -0.0763 -7.3713 -1.4257 21 1 -0.3065 -6.9708 -0.4494 22 6 -0.5459 -8.6259 -1.7896 23 7 -0.2649 -9.1141 -2.9792 24 14 -1.5766 -9.6211 -0.5911 25 1 -3.0130 -9.3002 -0.7884 26 1 -1.3554 -11.0697 -0.8323 27 1 -1.1808 -9.2848 0.8000 28 6 1.2401 -5.3197 -2.0697 29 1 2.2571 -5.4170 -1.6899 30 6 0.4655 -4.3915 -1.1603 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8899 -0.5142 34 1 1.6731 2.1144 0.0004 35 1 4.5608 -2.8020 -1.0296 36 1 3.7967 -3.2578 0.5121 37 1 5.3261 -2.3470 0.5118 38 1 0.6415 -2.0492 -2.8990 39 1 2.2395 -1.6408 -2.2370 40 1 2.3167 -3.0160 -4.3777 41 1 3.1673 -3.7685 -3.0013 42 1 1.5413 -5.7321 -5.3623 43 1 2.8922 -5.9362 -4.1980 44 1 0.1922 -7.2995 -4.2573 45 1 1.7459 -7.9097 -3.6256 46 1 -0.5927 -9.9909 -3.2334 47 1 0.4375 -4.7980 -0.1493 48 1 -0.5478 -4.2606 -1.5402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042147100.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:55 Heat of formation + Delta-G solvation = -63.624001 kcal Electronic energy + Delta-G solvation = -31961.146309 eV Core-core repulsion = 27789.133401 eV Total energy + Delta-G solvation = -4172.012907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.33079 -41.55144 -39.87590 -39.03671 -37.08794 -36.85051 -34.65599 -33.93797 -32.88184 -31.13585 -30.19418 -29.88172 -28.90117 -26.53310 -25.97573 -24.81774 -23.55858 -23.10786 -21.86491 -21.77894 -20.77848 -19.44626 -19.03386 -18.43670 -18.18328 -17.77442 -17.35695 -16.79187 -16.30352 -16.19557 -15.76702 -15.63094 -15.22384 -15.14254 -14.97742 -14.73719 -14.55810 -14.48371 -14.30648 -14.17255 -13.81655 -13.71542 -13.54349 -13.46398 -13.41335 -13.11137 -13.04043 -12.79566 -12.74777 -12.51518 -12.12732 -11.99558 -11.78007 -11.61457 -11.52419 -11.50251 -11.34263 -11.09345 -11.00046 -10.70730 -9.78772 -9.51949 -8.88313 -7.84830 -5.19111 -0.72399 0.14558 1.00167 1.34746 1.45832 1.46324 1.54933 1.75656 2.03728 2.50374 2.95545 3.08334 3.34187 3.35477 3.50118 3.61008 3.79559 3.95068 3.98119 3.98615 4.16237 4.27343 4.29106 4.31788 4.38758 4.40568 4.53442 4.55608 4.58462 4.63703 4.70521 4.74781 4.83850 4.88623 4.90893 4.94611 5.03867 5.12081 5.13952 5.18184 5.25771 5.37442 5.51299 5.61710 5.69852 5.81596 5.88982 6.21064 6.24252 6.28495 6.93829 7.09995 7.79069 8.45416 9.26032 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.017983 B = 0.003061 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.690607 B = 9145.533288 C = 9751.436129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.068 3.932 3 C -0.273 4.273 4 C 0.494 3.506 5 O -0.514 6.514 6 O -0.257 6.257 7 C 0.198 3.802 8 C -0.124 4.124 9 C -0.262 4.262 10 C 0.583 3.417 11 O -0.570 6.570 12 N -0.587 5.587 13 C 0.103 3.897 14 C -0.111 4.111 15 C -0.096 4.096 16 H 0.076 0.924 17 C -0.122 4.122 18 C 0.181 3.819 19 N -0.612 5.612 20 C -0.233 4.233 21 H 0.078 0.922 22 C -0.061 4.061 23 N -0.948 5.948 24 Si 0.968 3.032 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.274 1.274 28 C 0.149 3.851 29 H 0.017 0.983 30 C 0.129 3.871 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.069 0.931 34 H 0.185 0.815 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.020 0.980 45 H -0.001 1.001 46 H 0.246 0.754 47 H 0.063 0.937 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.777 19.697 -0.894 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.066 3.934 3 C -0.293 4.293 4 C 0.350 3.650 5 O -0.407 6.407 6 O -0.166 6.166 7 C 0.148 3.852 8 C -0.180 4.180 9 C -0.267 4.267 10 C 0.370 3.630 11 O -0.449 6.449 12 N -0.319 5.319 13 C -0.018 4.018 14 C -0.149 4.149 15 C -0.116 4.116 16 H 0.094 0.906 17 C -0.160 4.160 18 C 0.056 3.944 19 N -0.337 5.337 20 C -0.362 4.362 21 H 0.096 0.904 22 C -0.255 4.255 23 N -0.597 5.597 24 Si 0.797 3.203 25 H -0.212 1.212 26 H -0.222 1.222 27 H -0.199 1.199 28 C 0.041 3.959 29 H 0.035 0.965 30 C 0.005 3.995 31 H 0.112 0.888 32 H 0.132 0.868 33 H 0.088 0.912 34 H 0.202 0.798 35 H 0.146 0.854 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.129 0.871 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.038 0.962 45 H 0.017 0.983 46 H 0.055 0.945 47 H 0.082 0.918 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.014 19.714 -0.342 20.613 hybrid contribution -0.871 -1.329 0.768 1.765 sum 5.143 18.385 0.425 19.095 Atomic orbital electron populations 1.21139 0.87647 1.05269 1.04642 1.20414 0.98398 0.89748 0.84822 1.22271 0.91157 1.01090 1.14736 1.19635 0.89182 0.80391 0.75841 1.90994 1.71684 1.27036 1.50989 1.83398 1.44900 1.14775 1.73503 1.23055 0.90247 0.85615 0.86235 1.21313 1.01892 0.87739 1.07008 1.19694 0.93052 0.94890 1.19031 1.17787 0.78253 0.83526 0.83421 1.90839 1.56015 1.65590 1.32464 1.48260 1.55841 1.21284 1.06506 1.22018 1.01597 0.95403 0.82780 1.21821 0.98155 0.94096 1.00837 1.22185 1.00013 0.94725 0.94652 0.90566 1.22597 0.99688 0.94393 0.99343 1.21342 0.95456 0.93335 0.84270 1.44415 1.60396 1.14999 1.13924 1.19313 1.23640 0.97733 0.95562 0.90388 1.25511 1.02573 0.98781 0.98609 1.70141 1.50769 1.18241 1.20587 0.85233 0.78716 0.77668 0.78701 1.21192 1.22191 1.19878 1.21028 0.94503 0.84999 0.95334 0.96542 1.21296 0.95245 0.82246 1.00675 0.88783 0.86788 0.91201 0.79800 0.85424 0.89345 0.86526 0.89432 0.88481 0.87142 0.90674 0.89917 0.90937 0.96194 0.98304 0.94477 0.91811 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.67 71.24 0.69 -1.02 16 2 C 0.07 1.12 5.93 -19.50 -0.12 1.00 16 3 C -0.27 -4.55 9.64 22.38 0.22 -4.34 16 4 C 0.49 11.16 7.93 68.46 0.54 11.70 16 5 O -0.51 -15.08 17.93 18.72 0.34 -14.74 16 6 O -0.26 -5.30 9.81 25.80 0.25 -5.05 16 7 C 0.20 3.57 6.73 25.53 0.17 3.74 16 8 C -0.12 -1.76 9.80 71.24 0.70 -1.07 16 9 C -0.26 -5.21 3.64 -20.09 -0.07 -5.28 16 10 C 0.58 15.02 4.09 86.69 0.35 15.37 16 11 O -0.57 -19.94 16.45 -4.05 -0.07 -20.01 16 12 N -0.59 -14.21 3.02 -823.51 -2.48 -16.70 16 13 C 0.10 1.68 6.23 86.66 0.54 2.22 16 14 C -0.11 -1.89 5.72 30.55 0.17 -1.72 16 15 C -0.10 -2.63 2.61 -10.08 -0.03 -2.66 16 16 H 0.08 2.16 8.14 -2.38 -0.02 2.15 16 17 C -0.12 -3.81 6.54 31.62 0.21 -3.61 16 18 C 0.18 8.36 5.45 86.85 0.47 8.83 16 19 N -0.61 -29.53 3.35 -670.19 -2.24 -31.77 16 20 C -0.23 -12.66 9.88 84.03 0.83 -11.83 16 21 H 0.08 4.14 7.41 -2.91 -0.02 4.12 16 22 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 23 N -0.95 -55.87 10.43 21.65 0.23 -55.65 16 24 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 28 C 0.15 5.41 2.74 45.44 0.12 5.53 16 29 H 0.02 0.65 7.93 -2.39 -0.02 0.63 16 30 C 0.13 4.27 5.66 85.57 0.48 4.76 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 0.83 8.09 -2.39 -0.02 0.81 16 33 H 0.07 1.09 7.18 -2.38 -0.02 1.07 16 34 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 35 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.66 6.99 -2.39 -0.02 1.65 16 37 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.10 1.21 6.05 -2.39 -0.01 1.20 16 40 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.24 7.99 -2.39 -0.02 1.22 16 42 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.07 2.05 8.12 -2.39 -0.02 2.04 16 44 H 0.02 1.04 7.21 -2.39 -0.02 1.03 16 45 H 0.00 -0.07 7.77 -2.39 -0.02 -0.09 16 46 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 47 H 0.06 2.52 6.75 -2.39 -0.02 2.50 16 48 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -75.24 382.60 4.78 -70.46 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 0.97 Total: 7.21 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 5.76 Total: 18.67 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -4.50 Total: -104.11 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: 0.52 Total: -39.80 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.24 4.78 -70.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042147100.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.838 kcal (2) G-P(sol) polarization free energy of solvation -75.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds