Wall clock time and date at job start Sat Apr 11 2020 07:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.45591 * 2 1 4 4 C 1.34774 * 120.00531 * 60.02655 * 3 2 1 5 5 O 1.21595 * 119.99857 * 359.97438 * 4 3 2 6 6 C 1.47543 * 120.00534 * 179.97438 * 4 3 2 7 7 C 1.39765 * 120.13743 * 359.97438 * 6 4 3 8 8 C 1.37755 * 119.95154 * 179.97438 * 7 6 4 9 9 C 1.38481 * 120.32869 * 0.07661 * 8 7 6 10 10 C 1.38594 * 120.41255 * 0.26033 * 9 8 7 11 11 C 1.38996 * 119.90387 * 359.36078 * 10 9 8 12 12 O 1.35811 * 120.86928 * 180.54877 * 11 10 9 13 13 C 1.43180 * 116.73895 * 342.97555 * 12 11 10 14 14 C 1.53463 * 108.24985 * 46.16418 * 13 12 11 15 15 O 1.36134 * 119.36849 * 179.97438 * 10 9 8 16 16 C 1.53043 * 109.44738 * 119.96190 * 2 1 3 17 17 C 1.53189 * 109.31034 * 181.38462 * 16 2 1 18 18 N 1.46933 * 108.77426 * 305.36417 * 17 16 2 19 19 C 1.36935 * 120.62783 * 233.63506 * 18 17 16 20 20 H 1.07997 * 120.00582 * 27.66671 * 19 18 17 21 21 C 1.38813 * 119.99700 * 207.66304 * 19 18 17 22 22 N 1.31618 * 119.99970 * 17.36478 * 21 19 18 23 23 Si 1.86807 * 120.00146 * 197.36176 * 21 19 18 24 24 H 1.48496 * 109.46782 * 60.00228 * 23 21 19 25 25 H 1.48499 * 109.47214 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46821 * 300.00356 * 23 21 19 27 27 C 1.46920 * 118.73791 * 53.61124 * 18 17 16 28 28 C 1.53032 * 109.46179 * 240.02731 * 2 1 3 29 29 H 1.09006 * 109.47060 * 60.00454 * 1 2 3 30 30 H 1.08996 * 109.46878 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47179 * 300.00451 * 1 2 3 32 32 H 0.97006 * 119.99692 * 240.01883 * 3 2 1 33 33 H 1.08006 * 120.02610 * 359.97208 * 7 6 4 34 34 H 1.08003 * 119.83398 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.79298 * 179.97438 * 9 8 7 36 36 H 1.09003 * 109.70458 * 165.85525 * 13 12 11 37 37 H 1.09001 * 109.70972 * 286.47110 * 13 12 11 38 38 H 1.08999 * 109.71111 * 60.01589 * 14 13 12 39 39 H 1.09003 * 109.70848 * 180.59982 * 14 13 12 40 40 H 1.09002 * 109.49442 * 301.33292 * 16 2 1 41 41 H 1.08994 * 109.49690 * 61.42701 * 16 2 1 42 42 H 1.09000 * 109.58378 * 185.57969 * 17 16 2 43 43 H 1.08993 * 109.70923 * 65.22208 * 17 16 2 44 44 H 0.97002 * 119.99678 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.58851 * 186.60445 * 27 18 17 46 46 H 1.09000 * 109.70382 * 66.24939 * 27 18 17 47 47 H 1.09004 * 109.49989 * 298.57766 * 28 2 1 48 48 H 1.08996 * 109.50122 * 58.64185 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6927 2.2111 1.0110 5 8 0.9938 1.8133 1.9230 6 6 2.1846 3.6021 1.0113 7 6 2.9886 4.0623 -0.0352 8 6 3.4453 5.3619 -0.0313 9 6 3.1133 6.2167 1.0063 10 6 2.3227 5.7735 2.0548 11 6 1.8480 4.4671 2.0605 12 8 1.0627 4.0155 3.0724 13 6 1.0590 4.7871 4.2785 14 6 0.9076 6.2670 3.9018 15 8 2.0096 6.6317 3.0641 16 6 2.0396 -0.7207 1.2503 17 6 3.5711 -0.6887 1.2646 18 7 4.0677 -1.2492 0.0004 19 6 4.9754 -2.2745 0.0007 20 1 5.0079 -2.9667 0.8290 21 6 5.8536 -2.4241 -1.0638 22 7 6.0603 -1.4225 -1.8922 23 14 6.7424 -4.0470 -1.3204 24 1 5.7467 -5.1301 -1.5219 25 1 7.6167 -3.9489 -2.5167 26 1 7.5707 -4.3520 -0.1261 27 6 3.5715 -0.6889 -1.2639 28 6 2.0399 -0.7208 -1.2499 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.5754 1.6988 -0.7277 33 1 3.2517 3.3995 -0.8464 34 1 4.0662 5.7157 -0.8412 35 1 3.4764 7.2338 1.0008 36 1 0.2237 4.4806 4.9083 37 1 1.9971 4.6379 4.8132 38 1 -0.0281 6.4152 3.3626 39 1 0.9126 6.8784 4.8042 40 1 1.6568 -0.2205 2.1399 41 1 1.6973 -1.7555 1.2385 42 1 3.9411 -1.2847 2.0989 43 1 3.9162 0.3399 1.3689 44 1 6.6743 -1.5270 -2.6359 45 1 3.9418 -1.2850 -2.0980 46 1 3.9145 0.3403 -1.3695 47 1 1.6977 -1.7557 -1.2382 48 1 1.6570 -0.2212 -2.1397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045456975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:58 Heat of formation + Delta-G solvation = -50.057458 kcal Electronic energy + Delta-G solvation = -31929.173891 eV Core-core repulsion = 27757.749273 eV Total energy + Delta-G solvation = -4171.424618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.46245 -39.96652 -37.90358 -37.47101 -36.75572 -34.33085 -32.33568 -31.33196 -31.17370 -30.14266 -29.77179 -28.56589 -27.36663 -24.97143 -24.25801 -23.90685 -22.24423 -21.30432 -21.11690 -20.33236 -18.94233 -18.60218 -17.63771 -17.39642 -16.71075 -16.38280 -15.62584 -15.21081 -14.89207 -14.83485 -14.73687 -14.57932 -14.33587 -13.95974 -13.86768 -13.73385 -13.37216 -13.20745 -13.06770 -12.99486 -12.34977 -12.27853 -12.00274 -11.72213 -11.57572 -11.34748 -11.27960 -11.23027 -11.13477 -10.88691 -10.80049 -10.67732 -10.35237 -10.24199 -9.83477 -9.69753 -9.57425 -9.03302 -8.79357 -8.51149 -8.40887 -8.20864 -6.63423 -5.77614 -3.18094 0.77602 1.18468 2.80314 3.05826 3.10238 3.39709 3.45064 3.46980 3.48413 3.88311 4.02201 4.46443 4.52082 4.57995 4.66916 4.84772 4.93870 4.97375 5.16140 5.24358 5.32621 5.34722 5.40445 5.48314 5.57010 5.61803 5.67591 5.90067 5.92073 6.06771 6.11625 6.24533 6.25712 6.35813 6.38862 6.43226 6.48679 6.57344 6.71595 6.77470 6.78305 6.89204 7.02737 7.15756 7.25782 7.32751 7.60569 7.81124 8.00094 8.47084 8.66462 9.23761 9.87441 10.44725 11.31018 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.003056 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.223353 B = 9159.929961 C = 9759.042152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.186 3.814 3 N -0.706 5.706 4 C 0.560 3.440 5 O -0.521 6.521 6 C -0.129 4.129 7 C -0.079 4.079 8 C -0.124 4.124 9 C -0.092 4.092 10 C 0.033 3.967 11 C 0.107 3.893 12 O -0.268 6.268 13 C 0.015 3.985 14 C 0.020 3.980 15 O -0.308 6.308 16 C -0.142 4.142 17 C 0.151 3.849 18 N -0.591 5.591 19 C -0.249 4.249 20 H 0.064 0.936 21 C 0.001 3.999 22 N -0.904 5.904 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.173 3.827 28 C -0.146 4.146 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.398 0.602 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.015 0.985 44 H 0.253 0.747 45 H 0.089 0.911 46 H 0.015 0.985 47 H 0.071 0.929 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.727 16.444 5.784 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.101 3.899 3 N -0.358 5.358 4 C 0.347 3.653 5 O -0.398 6.398 6 C -0.133 4.133 7 C -0.098 4.098 8 C -0.142 4.142 9 C -0.111 4.111 10 C -0.012 4.012 11 C 0.059 3.941 12 O -0.180 6.180 13 C -0.061 4.061 14 C -0.056 4.056 15 O -0.222 6.222 16 C -0.182 4.182 17 C 0.024 3.976 18 N -0.313 5.313 19 C -0.379 4.379 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.549 5.549 23 Si 0.732 3.268 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.047 3.953 28 C -0.186 4.186 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.234 0.766 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.033 0.967 44 H 0.063 0.937 45 H 0.107 0.893 46 H 0.033 0.967 47 H 0.090 0.910 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.143 16.123 6.363 20.606 hybrid contribution 0.784 -0.547 -0.375 1.027 sum -10.358 15.576 5.987 19.641 Atomic orbital electron populations 1.22224 0.95459 1.01774 1.02363 1.20253 0.92567 0.79935 0.97152 1.46061 1.53031 1.12087 1.24657 1.17803 0.80660 0.84361 0.82520 1.90724 1.37410 1.76394 1.35257 1.19524 1.03199 0.94264 0.96290 1.21240 0.95186 0.96258 0.97098 1.20842 1.01365 0.93272 0.98763 1.20566 0.98548 1.00797 0.91216 1.18776 1.02547 0.88011 0.91817 1.18882 0.94478 0.90529 0.90207 1.86618 1.60922 1.49268 1.21218 1.23706 1.04888 0.90908 0.86623 1.23645 0.89260 0.96906 0.95754 1.86297 1.49675 1.45261 1.41014 1.22386 0.98902 0.99558 0.97369 1.20827 0.90923 0.96093 0.89710 1.44030 1.48239 1.39622 0.99446 1.19167 1.09744 1.02922 1.06072 0.91809 1.24997 0.97237 0.97418 1.00015 1.70009 1.37866 1.29012 1.18043 0.86381 0.79233 0.83955 0.77281 1.21095 1.21690 1.20971 1.20727 0.86840 0.97007 0.90772 1.22529 1.01429 1.00021 0.94599 0.93409 0.92317 0.90850 0.76621 0.84427 0.84379 0.84586 0.85963 0.90405 0.90510 0.86113 0.90828 0.91910 0.93241 0.96687 0.93687 0.89271 0.96736 0.91012 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 8.40 37.16 0.31 -2.22 16 2 C 0.19 3.25 0.66 -131.78 -0.09 3.16 16 3 N -0.71 -11.69 4.05 -48.59 -0.20 -11.89 16 4 C 0.56 9.69 7.18 -12.47 -0.09 9.60 16 5 O -0.52 -10.19 11.31 -16.87 -0.19 -10.38 16 6 C -0.13 -1.96 5.89 -104.84 -0.62 -2.58 16 7 C -0.08 -0.99 9.53 -39.19 -0.37 -1.37 16 8 C -0.12 -1.32 10.02 -39.67 -0.40 -1.72 16 9 C -0.09 -1.01 9.95 -39.36 -0.39 -1.41 16 10 C 0.03 0.43 6.49 -39.17 -0.25 0.17 16 11 C 0.11 1.58 6.51 -38.61 -0.25 1.33 16 12 O -0.27 -3.98 8.42 -47.38 -0.40 -4.38 16 13 C 0.01 0.14 7.26 37.40 0.27 0.41 16 14 C 0.02 0.16 7.26 37.40 0.27 0.44 16 15 O -0.31 -3.51 10.42 -32.99 -0.34 -3.86 16 16 C -0.14 -2.76 4.67 -26.61 -0.12 -2.88 16 17 C 0.15 3.35 6.25 -3.71 -0.02 3.33 16 18 N -0.59 -14.68 2.99 -172.32 -0.52 -15.20 16 19 C -0.25 -6.85 9.59 -15.06 -0.14 -6.99 16 20 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 21 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 22 N -0.90 -25.63 11.19 55.49 0.62 -25.01 16 23 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.17 3.91 5.03 -3.71 -0.02 3.89 16 28 C -0.15 -2.67 4.96 -26.61 -0.13 -2.81 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.26 6.16 -51.93 -0.32 0.94 16 32 H 0.40 6.12 5.29 -40.82 -0.22 5.90 16 33 H 0.14 1.56 6.40 -52.48 -0.34 1.23 16 34 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 35 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.47 6.20 -51.93 -0.32 1.14 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 43 H 0.02 0.35 7.74 -51.93 -0.40 -0.05 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.09 2.28 6.03 -51.93 -0.31 1.97 16 46 H 0.01 0.33 6.94 -51.93 -0.36 -0.03 16 47 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 48 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -32.92 372.15 -9.46 -42.38 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.88 Total: 5.82 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.13 Total: 0.32 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.09 Total: -52.10 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.93 Total: -18.62 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.92 -9.46 -42.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045456975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.678 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds