Wall clock time and date at job start Sat Apr 11 2020 07:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.45591 * 2 1 4 4 C 1.34774 * 120.00531 * 60.02655 * 3 2 1 5 5 O 1.21595 * 119.99857 * 359.97438 * 4 3 2 6 6 C 1.47543 * 120.00534 * 179.97438 * 4 3 2 7 7 C 1.39765 * 120.13743 * 359.97438 * 6 4 3 8 8 C 1.37755 * 119.95154 * 179.97438 * 7 6 4 9 9 C 1.38481 * 120.32869 * 0.07661 * 8 7 6 10 10 C 1.38594 * 120.41255 * 0.26033 * 9 8 7 11 11 C 1.38996 * 119.90387 * 359.36078 * 10 9 8 12 12 O 1.35811 * 120.86928 * 180.54877 * 11 10 9 13 13 C 1.43180 * 116.73895 * 342.97555 * 12 11 10 14 14 C 1.53463 * 108.24985 * 46.16418 * 13 12 11 15 15 O 1.36134 * 119.36849 * 179.97438 * 10 9 8 16 16 C 1.53043 * 109.44738 * 119.96190 * 2 1 3 17 17 C 1.53189 * 109.31034 * 181.38462 * 16 2 1 18 18 N 1.46933 * 108.77426 * 305.36417 * 17 16 2 19 19 C 1.36935 * 120.62783 * 233.63506 * 18 17 16 20 20 H 1.07997 * 120.00582 * 27.66671 * 19 18 17 21 21 C 1.38813 * 119.99700 * 207.66304 * 19 18 17 22 22 N 1.31618 * 119.99970 * 17.36478 * 21 19 18 23 23 Si 1.86807 * 120.00146 * 197.36176 * 21 19 18 24 24 H 1.48496 * 109.46782 * 60.00228 * 23 21 19 25 25 H 1.48499 * 109.47214 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46821 * 300.00356 * 23 21 19 27 27 C 1.46920 * 118.73791 * 53.61124 * 18 17 16 28 28 C 1.53032 * 109.46179 * 240.02731 * 2 1 3 29 29 H 1.09006 * 109.47060 * 60.00454 * 1 2 3 30 30 H 1.08996 * 109.46878 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47179 * 300.00451 * 1 2 3 32 32 H 0.97006 * 119.99692 * 240.01883 * 3 2 1 33 33 H 1.08006 * 120.02610 * 359.97208 * 7 6 4 34 34 H 1.08003 * 119.83398 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.79298 * 179.97438 * 9 8 7 36 36 H 1.09003 * 109.70458 * 165.85525 * 13 12 11 37 37 H 1.09001 * 109.70972 * 286.47110 * 13 12 11 38 38 H 1.08999 * 109.71111 * 60.01589 * 14 13 12 39 39 H 1.09003 * 109.70848 * 180.59982 * 14 13 12 40 40 H 1.09002 * 109.49442 * 301.33292 * 16 2 1 41 41 H 1.08994 * 109.49690 * 61.42701 * 16 2 1 42 42 H 1.09000 * 109.58378 * 185.57969 * 17 16 2 43 43 H 1.08993 * 109.70923 * 65.22208 * 17 16 2 44 44 H 0.97002 * 119.99678 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.58851 * 186.60445 * 27 18 17 46 46 H 1.09000 * 109.70382 * 66.24939 * 27 18 17 47 47 H 1.09004 * 109.49989 * 298.57766 * 28 2 1 48 48 H 1.08996 * 109.50122 * 58.64185 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6927 2.2111 1.0110 5 8 0.9938 1.8133 1.9230 6 6 2.1846 3.6021 1.0113 7 6 2.9886 4.0623 -0.0352 8 6 3.4453 5.3619 -0.0313 9 6 3.1133 6.2167 1.0063 10 6 2.3227 5.7735 2.0548 11 6 1.8480 4.4671 2.0605 12 8 1.0627 4.0155 3.0724 13 6 1.0590 4.7871 4.2785 14 6 0.9076 6.2670 3.9018 15 8 2.0096 6.6317 3.0641 16 6 2.0396 -0.7207 1.2503 17 6 3.5711 -0.6887 1.2646 18 7 4.0677 -1.2492 0.0004 19 6 4.9754 -2.2745 0.0007 20 1 5.0079 -2.9667 0.8290 21 6 5.8536 -2.4241 -1.0638 22 7 6.0603 -1.4225 -1.8922 23 14 6.7424 -4.0470 -1.3204 24 1 5.7467 -5.1301 -1.5219 25 1 7.6167 -3.9489 -2.5167 26 1 7.5707 -4.3520 -0.1261 27 6 3.5715 -0.6889 -1.2639 28 6 2.0399 -0.7208 -1.2499 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.5754 1.6988 -0.7277 33 1 3.2517 3.3995 -0.8464 34 1 4.0662 5.7157 -0.8412 35 1 3.4764 7.2338 1.0008 36 1 0.2237 4.4806 4.9083 37 1 1.9971 4.6379 4.8132 38 1 -0.0281 6.4152 3.3626 39 1 0.9126 6.8784 4.8042 40 1 1.6568 -0.2205 2.1399 41 1 1.6973 -1.7555 1.2385 42 1 3.9411 -1.2847 2.0989 43 1 3.9162 0.3399 1.3689 44 1 6.6743 -1.5270 -2.6359 45 1 3.9418 -1.2850 -2.0980 46 1 3.9145 0.3403 -1.3695 47 1 1.6977 -1.7557 -1.2382 48 1 1.6570 -0.2212 -2.1397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045456975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:58 Heat of formation + Delta-G solvation = -69.505629 kcal Electronic energy + Delta-G solvation = -31930.017227 eV Core-core repulsion = 27757.749273 eV Total energy + Delta-G solvation = -4172.267954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39065 -41.30374 -39.12461 -38.45084 -37.96604 -36.05643 -33.83538 -32.83980 -32.13328 -31.65659 -31.15784 -29.43452 -29.06485 -26.00538 -25.74647 -25.16302 -23.94508 -22.78659 -21.99508 -21.75610 -20.10775 -19.93064 -18.86309 -18.52487 -18.13568 -17.47974 -16.83088 -16.55110 -16.24334 -16.12871 -15.84885 -15.66148 -15.55292 -15.33536 -15.18397 -14.98053 -14.86154 -14.78891 -14.52396 -14.10113 -13.88743 -13.31822 -13.16468 -13.07754 -13.00089 -12.89000 -12.81027 -12.60835 -12.50963 -12.21714 -12.16761 -12.00841 -11.98835 -11.76445 -11.66299 -11.29717 -11.28912 -10.51987 -10.43622 -9.96705 -9.66414 -9.14222 -8.64581 -7.85948 -5.29627 -0.23068 0.25909 1.48401 1.49939 1.56921 1.87943 2.06906 2.21708 2.28032 2.52790 2.80238 3.23435 3.28538 3.57264 3.70728 3.79457 3.86211 3.92280 3.99065 4.06537 4.13921 4.16224 4.24430 4.34490 4.48342 4.54004 4.57362 4.63642 4.66591 4.75852 4.80930 4.89268 4.92498 4.97521 5.01206 5.04417 5.16307 5.23149 5.29247 5.34871 5.38465 5.49799 5.58247 5.65189 5.71818 5.79111 5.88282 6.35501 6.40901 6.69664 7.17720 7.36016 7.87272 8.40018 9.19803 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.003056 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.223353 B = 9159.929961 C = 9759.042152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.188 3.812 3 N -0.703 5.703 4 C 0.558 3.442 5 O -0.550 6.550 6 C -0.159 4.159 7 C -0.084 4.084 8 C -0.116 4.116 9 C -0.086 4.086 10 C 0.025 3.975 11 C 0.088 3.912 12 O -0.300 6.300 13 C 0.005 3.995 14 C 0.020 3.980 15 O -0.315 6.315 16 C -0.130 4.130 17 C 0.155 3.845 18 N -0.605 5.605 19 C -0.268 4.268 20 H 0.058 0.942 21 C -0.043 4.043 22 N -0.927 5.927 23 Si 0.964 3.036 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.179 3.821 28 C -0.131 4.131 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.403 0.597 33 H 0.145 0.855 34 H 0.172 0.828 35 H 0.164 0.836 36 H 0.146 0.854 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.159 0.841 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.003 0.997 44 H 0.251 0.749 45 H 0.059 0.941 46 H 0.008 0.992 47 H 0.069 0.931 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.177 17.798 5.357 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.103 3.897 3 N -0.356 5.356 4 C 0.346 3.654 5 O -0.430 6.430 6 C -0.163 4.163 7 C -0.103 4.103 8 C -0.134 4.134 9 C -0.105 4.105 10 C -0.020 4.020 11 C 0.040 3.960 12 O -0.214 6.214 13 C -0.070 4.070 14 C -0.054 4.054 15 O -0.230 6.230 16 C -0.170 4.170 17 C 0.029 3.971 18 N -0.328 5.328 19 C -0.398 4.398 20 H 0.076 0.924 21 C -0.239 4.239 22 N -0.573 5.573 23 Si 0.792 3.208 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.054 3.946 28 C -0.171 4.171 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.240 0.760 33 H 0.163 0.837 34 H 0.189 0.811 35 H 0.182 0.818 36 H 0.163 0.837 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.176 0.824 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.021 0.979 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.026 0.974 47 H 0.088 0.912 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.606 17.492 5.940 21.817 hybrid contribution 0.950 -0.879 -0.152 1.303 sum -10.656 16.613 5.789 20.569 Atomic orbital electron populations 1.22103 0.93601 1.02589 1.02448 1.20183 0.93847 0.80190 0.95508 1.45999 1.53083 1.11621 1.24874 1.18165 0.80056 0.85255 0.81934 1.90692 1.38822 1.77186 1.36263 1.19528 1.05288 0.93407 0.98054 1.21422 0.94786 0.97442 0.96615 1.21224 1.00640 0.92184 0.99378 1.20994 0.97126 1.02051 0.90314 1.18992 1.02732 0.87556 0.92703 1.19105 0.95107 0.91429 0.90364 1.86551 1.61188 1.51098 1.22527 1.24021 1.05790 0.91793 0.85351 1.23913 0.88538 0.96290 0.96683 1.86278 1.50742 1.45022 1.40961 1.22224 0.96471 0.99859 0.98445 1.20800 0.92835 0.94872 0.88586 1.44243 1.48265 1.39508 1.00801 1.19417 1.10509 1.03665 1.06219 0.92411 1.25676 0.98097 1.00257 0.99843 1.70139 1.38390 1.30463 1.18281 0.85403 0.78076 0.80337 0.76952 1.20535 1.21668 1.20684 1.20599 0.89566 0.95681 0.88799 1.22338 0.97973 1.00499 0.96261 0.91744 0.91122 0.92305 0.76010 0.83707 0.81091 0.81800 0.83671 0.90693 0.90072 0.82397 0.91407 0.91864 0.94282 0.97911 0.93964 0.92277 0.97357 0.91219 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 8.40 71.98 0.60 -3.91 16 2 C 0.19 6.47 0.66 3.63 0.00 6.47 16 3 N -0.70 -23.25 4.05 -425.91 -1.73 -24.98 16 4 C 0.56 19.64 7.18 86.70 0.62 20.27 16 5 O -0.55 -22.14 11.31 17.17 0.19 -21.94 16 6 C -0.16 -4.89 5.89 -20.01 -0.12 -5.01 16 7 C -0.08 -2.04 9.53 22.52 0.21 -1.83 16 8 C -0.12 -2.21 10.02 22.21 0.22 -1.99 16 9 C -0.09 -1.70 9.95 22.41 0.22 -1.48 16 10 C 0.03 0.62 6.49 22.54 0.15 0.76 16 11 C 0.09 2.60 6.51 22.90 0.15 2.75 16 12 O -0.30 -9.12 8.42 -64.44 -0.54 -9.66 16 13 C 0.01 0.10 7.26 72.14 0.52 0.62 16 14 C 0.02 0.30 7.26 72.14 0.52 0.82 16 15 O -0.31 -6.68 10.42 -82.81 -0.86 -7.54 16 16 C -0.13 -5.10 4.67 30.67 0.14 -4.96 16 17 C 0.15 7.07 6.25 86.36 0.54 7.61 16 18 N -0.60 -30.58 2.99 -699.11 -2.09 -32.67 16 19 C -0.27 -14.94 9.59 84.03 0.81 -14.13 16 20 H 0.06 3.21 7.89 -2.91 -0.02 3.19 16 21 C -0.04 -2.36 4.91 84.86 0.42 -1.95 16 22 N -0.93 -53.09 11.19 21.65 0.24 -52.85 16 23 Si 0.96 44.69 29.59 68.60 2.03 46.72 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 27 C 0.18 8.16 5.03 86.36 0.43 8.60 16 28 C -0.13 -4.67 4.96 30.67 0.15 -4.52 16 29 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 1.99 6.16 -2.39 -0.01 1.97 16 32 H 0.40 12.31 5.29 -92.70 -0.49 11.82 16 33 H 0.15 3.18 6.40 -2.91 -0.02 3.16 16 34 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 2.76 6.20 -2.39 -0.01 2.74 16 41 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.04 1.81 7.93 -2.39 -0.02 1.79 16 43 H 0.00 0.14 7.74 -2.39 -0.02 0.12 16 44 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 45 H 0.06 3.06 6.03 -2.39 -0.01 3.05 16 46 H 0.01 0.39 6.94 -2.39 -0.02 0.37 16 47 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -72.59 372.15 3.35 -69.25 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.50 Total: 25.53 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 5.61 Total: 8.15 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -3.58 Total: -110.50 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -1.21 Total: -39.15 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -72.59 3.35 -69.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045456975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.260 kcal (2) G-P(sol) polarization free energy of solvation -72.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds