Wall clock time and date at job start Sat Apr 11 2020 07:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46113 * 2 1 4 4 C 1.34775 * 119.99847 * 60.03291 * 3 2 1 5 5 O 1.21283 * 120.00080 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00515 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.73896 * 54.38330 * 6 4 3 8 8 C 1.53472 * 109.70812 * 293.78330 * 6 4 3 9 9 O 1.43458 * 108.00938 * 180.27293 * 8 6 4 10 10 C 1.36102 * 116.59236 * 46.71768 * 9 8 6 11 11 C 1.38705 * 119.40548 * 162.21942 * 10 9 8 12 12 C 1.38192 * 120.06609 * 179.60606 * 11 10 9 13 13 C 1.38255 * 120.11914 * 0.05944 * 12 11 10 14 14 C 1.38191 * 120.10676 * 0.02562 * 13 12 11 15 15 C 1.38704 * 120.06949 * 0.25293 * 14 13 12 16 16 O 1.36104 * 119.39593 * 179.48036 * 15 14 13 17 17 C 1.53036 * 109.45076 * 119.97258 * 2 1 3 18 18 C 1.53189 * 109.31442 * 181.37919 * 17 2 1 19 19 N 1.46931 * 108.77289 * 305.36122 * 18 17 2 20 20 C 1.36936 * 120.63211 * 233.58808 * 19 18 17 21 21 H 1.07997 * 120.00448 * 152.30682 * 20 19 18 22 22 C 1.38814 * 119.99682 * 332.30738 * 20 19 18 23 23 N 1.31619 * 120.00526 * 342.59999 * 22 20 19 24 24 Si 1.86810 * 119.99897 * 162.60194 * 22 20 19 25 25 H 1.48500 * 109.47058 * 94.34443 * 24 22 20 26 26 H 1.48499 * 109.47058 * 214.35184 * 24 22 20 27 27 H 1.48500 * 109.46711 * 334.34810 * 24 22 20 28 28 C 1.46930 * 118.73744 * 53.61130 * 19 18 17 29 29 C 1.53050 * 109.46005 * 240.03132 * 2 1 3 30 30 H 1.09003 * 109.46770 * 59.99497 * 1 2 3 31 31 H 1.09000 * 109.47305 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46860 * 299.99429 * 1 2 3 33 33 H 0.96997 * 120.00631 * 240.02766 * 3 2 1 34 34 H 1.09000 * 109.70277 * 300.29710 * 8 6 4 35 35 H 1.08997 * 109.70958 * 60.90958 * 8 6 4 36 36 H 1.08007 * 119.96484 * 359.62481 * 11 10 9 37 37 H 1.08006 * 119.94192 * 180.02562 * 12 11 10 38 38 H 1.07998 * 119.94144 * 180.02562 * 13 12 11 39 39 H 1.08002 * 119.96647 * 179.97438 * 14 13 12 40 40 H 1.09001 * 109.49596 * 301.32382 * 17 2 1 41 41 H 1.08999 * 109.49936 * 61.42463 * 17 2 1 42 42 H 1.08998 * 109.58834 * 185.58007 * 18 17 2 43 43 H 1.09003 * 109.59164 * 65.14757 * 18 17 2 44 44 H 0.96996 * 120.00428 * 179.97438 * 23 22 20 45 45 H 1.09002 * 109.58156 * 186.60578 * 28 19 18 46 46 H 1.08996 * 109.58728 * 66.17870 * 28 19 18 47 47 H 1.09000 * 109.49235 * 298.58608 * 29 2 1 48 48 H 1.09000 * 109.49363 * 58.64009 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6929 2.2109 1.0112 5 8 0.9958 1.8140 1.9208 6 6 2.1954 3.6316 1.0116 7 1 1.9186 4.1203 0.0774 8 6 3.7221 3.6406 1.1677 9 8 4.1597 5.0068 1.1700 10 6 3.4652 5.8677 1.9631 11 6 4.0327 7.0858 2.3065 12 6 3.3364 7.9736 3.1044 13 6 2.0731 7.6500 3.5635 14 6 1.5026 6.4373 3.2265 15 6 2.1984 5.5392 2.4309 16 8 1.6279 4.3443 2.1161 17 6 2.0396 -0.7209 1.2500 18 6 3.5711 -0.6890 1.2644 19 7 4.0676 -1.2494 0.0001 20 6 4.9759 -2.2741 0.0001 21 1 5.0088 -2.9667 -0.8279 22 6 5.8544 -2.4228 1.0646 23 7 6.0612 -1.4205 1.8923 24 14 6.7434 -4.0455 1.3223 25 1 8.0772 -3.9879 0.6720 26 1 6.9120 -4.2920 2.7769 27 1 5.9475 -5.1465 0.7226 28 6 3.5713 -0.6889 -1.2642 29 6 2.0399 -0.7208 -1.2501 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.5754 1.6989 -0.7276 34 1 3.9985 3.1570 2.1046 35 1 4.1802 3.1122 0.3317 36 1 5.0197 7.3408 1.9497 37 1 3.7800 8.9218 3.3702 38 1 1.5313 8.3462 4.1865 39 1 0.5158 6.1867 3.5868 40 1 1.6571 -0.2208 2.1398 41 1 1.6974 -1.7557 1.2382 42 1 3.9412 -1.2851 2.0985 43 1 3.9143 0.3404 1.3675 44 1 6.6748 -1.5246 2.6363 45 1 3.9416 -1.2850 -2.0983 46 1 3.9145 0.3405 -1.3672 47 1 1.6975 -1.7556 -1.2384 48 1 1.6569 -0.2210 -2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045634968.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:02 Heat of formation + Delta-G solvation = -50.407776 kcal Electronic energy + Delta-G solvation = -31821.995286 eV Core-core repulsion = 27650.555477 eV Total energy + Delta-G solvation = -4171.439809 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.53578 -40.09522 -37.99270 -37.49278 -36.95012 -34.49688 -32.64765 -31.45554 -30.78525 -30.48444 -29.96841 -28.52317 -27.49698 -25.40338 -24.14750 -22.99661 -22.41328 -22.10050 -21.03243 -20.30362 -19.00200 -18.66309 -17.94913 -17.49259 -16.81930 -16.39494 -15.62650 -15.29462 -14.92938 -14.89379 -14.82146 -14.55016 -14.22797 -13.97970 -13.89286 -13.87606 -13.51884 -13.40733 -13.31753 -13.08108 -12.42223 -12.26642 -12.07054 -11.94159 -11.67892 -11.50334 -11.47262 -11.27150 -11.15800 -10.99689 -10.74565 -10.67173 -10.43457 -10.32223 -10.02220 -9.80539 -9.65380 -9.20577 -8.80901 -8.75574 -8.50186 -8.20623 -6.72528 -5.83163 -3.25652 1.14290 1.15814 2.50050 2.58643 2.98695 3.34644 3.42732 3.44481 3.54580 3.62060 4.06680 4.45660 4.46342 4.58032 4.62965 4.82231 4.98599 5.10887 5.17563 5.22954 5.27115 5.29133 5.33738 5.43583 5.45825 5.52873 5.68536 5.87619 5.92009 5.97705 6.03940 6.05291 6.11378 6.26747 6.29692 6.35955 6.44402 6.46447 6.59382 6.64431 6.68799 6.77492 6.83162 6.95858 7.26423 7.33357 7.61778 7.67435 7.76075 8.31687 8.40182 9.16611 9.80021 10.35803 11.24927 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.003175 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.740019 B = 8817.589346 C =10058.556983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.186 3.814 3 N -0.704 5.704 4 C 0.528 3.472 5 O -0.508 6.508 6 C 0.035 3.965 7 H 0.106 0.894 8 C 0.035 3.965 9 O -0.301 6.301 10 C 0.048 3.952 11 C -0.114 4.114 12 C -0.120 4.120 13 C -0.118 4.118 14 C -0.113 4.113 15 C 0.055 3.945 16 O -0.278 6.278 17 C -0.153 4.153 18 C 0.178 3.822 19 N -0.590 5.590 20 C -0.255 4.255 21 H 0.065 0.935 22 C 0.004 3.996 23 N -0.900 5.900 24 Si 0.900 3.100 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.145 3.855 29 C -0.137 4.137 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.398 0.602 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.014 0.986 44 H 0.254 0.746 45 H 0.057 0.943 46 H 0.013 0.987 47 H 0.077 0.923 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 15.859 -2.745 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.102 3.898 3 N -0.357 5.357 4 C 0.311 3.689 5 O -0.382 6.382 6 C -0.026 4.026 7 H 0.123 0.877 8 C -0.041 4.041 9 O -0.215 6.215 10 C 0.003 3.997 11 C -0.132 4.132 12 C -0.138 4.138 13 C -0.136 4.136 14 C -0.132 4.132 15 C 0.009 3.991 16 O -0.192 6.192 17 C -0.193 4.193 18 C 0.052 3.948 19 N -0.313 5.313 20 C -0.385 4.385 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.544 5.544 24 Si 0.730 3.270 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.204 1.204 28 C 0.018 3.982 29 C -0.177 4.177 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.233 0.767 34 H 0.110 0.890 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.032 0.968 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.030 0.970 47 H 0.096 0.904 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.043 15.474 -1.968 18.031 hybrid contribution 0.845 -0.805 -0.273 1.199 sum -8.199 14.669 -2.241 16.954 Atomic orbital electron populations 1.22243 0.95196 1.02142 1.02415 1.20345 0.92721 0.79233 0.97529 1.45989 1.53120 1.12297 1.24256 1.19416 0.81319 0.85236 0.82973 1.90687 1.36673 1.75859 1.34976 1.22976 0.95085 0.93653 0.90884 0.87657 1.23670 0.92249 0.81569 1.06588 1.86418 1.54627 1.18460 1.62011 1.19006 0.90382 0.92890 0.97411 1.20470 1.00748 0.92227 0.99773 1.20908 0.95020 0.99543 0.98307 1.20901 0.95810 0.96058 1.00808 1.20458 1.00496 0.92380 0.99819 1.19037 0.91485 0.87573 1.00977 1.86399 1.54930 1.29659 1.48172 1.22611 1.00892 0.99331 0.96474 1.20689 0.87160 0.96808 0.90127 1.44071 1.48275 1.39652 0.99322 1.19154 1.09947 1.03063 1.06310 0.91723 1.25023 0.97212 0.97395 0.99836 1.70022 1.37505 1.29051 1.17867 0.86319 0.79559 0.83865 0.77243 1.21478 1.21551 1.20440 1.20869 0.90391 0.96164 0.90733 1.22351 0.99728 1.00655 0.94974 0.93345 0.91974 0.90788 0.76689 0.89027 0.85094 0.84753 0.85147 0.85116 0.84719 0.91048 0.91903 0.89643 0.96805 0.93630 0.92471 0.96958 0.90445 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.40 37.16 0.31 -2.03 16 2 C 0.19 2.96 0.66 -131.77 -0.09 2.87 16 3 N -0.70 -10.15 4.08 -47.57 -0.19 -10.35 16 4 C 0.53 8.32 6.61 -10.99 -0.07 8.25 16 5 O -0.51 -9.77 12.74 -14.15 -0.18 -9.95 16 6 C 0.03 0.48 3.43 -27.64 -0.09 0.38 16 7 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 8 C 0.04 0.48 6.54 37.40 0.24 0.73 16 9 O -0.30 -4.25 10.43 -32.86 -0.34 -4.59 16 10 C 0.05 0.66 6.49 -39.14 -0.25 0.40 16 11 C -0.11 -1.27 9.96 -39.43 -0.39 -1.67 16 12 C -0.12 -1.11 10.04 -39.59 -0.40 -1.51 16 13 C -0.12 -1.11 10.04 -39.59 -0.40 -1.51 16 14 C -0.11 -1.32 9.96 -39.43 -0.39 -1.71 16 15 C 0.05 0.77 6.49 -39.14 -0.25 0.51 16 16 O -0.28 -4.36 9.62 -47.03 -0.45 -4.82 16 17 C -0.15 -2.99 4.67 -26.61 -0.12 -3.11 16 18 C 0.18 4.12 5.05 -3.71 -0.02 4.10 16 19 N -0.59 -13.85 2.99 -172.32 -0.52 -14.37 16 20 C -0.26 -6.74 9.58 -15.06 -0.14 -6.88 16 21 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 22 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 23 N -0.90 -25.60 11.19 55.49 0.62 -24.98 16 24 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 28 C 0.15 2.70 6.24 -3.71 -0.02 2.67 16 29 C -0.14 -2.10 4.96 -26.61 -0.13 -2.23 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.21 6.17 -51.93 -0.32 0.88 16 33 H 0.40 4.88 7.22 -40.82 -0.29 4.58 16 34 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.13 1.58 8.09 -51.93 -0.42 1.16 16 36 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 37 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.07 1.47 6.20 -51.93 -0.32 1.15 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.09 2.30 6.04 -51.93 -0.31 1.99 16 43 H 0.01 0.33 7.74 -51.93 -0.40 -0.07 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 46 H 0.01 0.22 6.94 -51.93 -0.36 -0.14 16 47 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -31.88 377.75 -9.76 -41.64 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.04 Total: 6.08 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.31 Total: -0.70 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.09 Total: -49.69 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.98 Total: -19.36 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.88 -9.76 -41.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045634968.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.770 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds