Wall clock time and date at job start Sat Apr 11 2020 07:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46020 * 2 1 4 4 C 1.34775 * 119.99819 * 299.99777 * 3 2 1 5 5 O 1.21280 * 120.00298 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99950 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.70243 * 304.99658 * 6 4 3 8 8 C 1.53469 * 109.71031 * 65.58368 * 6 4 3 9 9 O 1.43177 * 108.23772 * 179.42317 * 8 6 4 10 10 C 1.36107 * 116.70685 * 313.76700 * 9 8 6 11 11 C 1.38701 * 119.40214 * 197.26386 * 10 9 8 12 12 C 1.38190 * 120.06901 * 180.15635 * 11 10 9 13 13 C 1.38258 * 120.11227 * 359.96230 * 12 11 10 14 14 C 1.38191 * 120.11498 * 359.94604 * 13 12 11 15 15 C 1.38711 * 120.06453 * 0.04153 * 14 13 12 16 16 O 1.36123 * 119.37822 * 180.23667 * 15 14 13 17 17 C 1.53039 * 109.46079 * 240.02467 * 2 1 3 18 18 C 1.53195 * 109.31118 * 178.60007 * 17 2 1 19 19 N 1.46934 * 108.76476 * 54.65771 * 18 17 2 20 20 C 1.36937 * 120.63168 * 126.35971 * 19 18 17 21 21 H 1.07995 * 119.99999 * 208.02372 * 20 19 18 22 22 C 1.38814 * 119.99961 * 28.02269 * 20 19 18 23 23 N 1.31624 * 119.99964 * 17.52292 * 22 20 19 24 24 Si 1.86799 * 120.00169 * 197.52490 * 22 20 19 25 25 H 1.48504 * 109.47101 * 94.06380 * 24 22 20 26 26 H 1.48493 * 109.47316 * 214.06619 * 24 22 20 27 27 H 1.48501 * 109.46854 * 334.06738 * 24 22 20 28 28 C 1.46919 * 118.73758 * 306.38113 * 19 18 17 29 29 C 1.53045 * 109.46039 * 119.97028 * 2 1 3 30 30 H 1.08997 * 109.46647 * 60.00410 * 1 2 3 31 31 H 1.08999 * 109.47073 * 300.00124 * 1 2 3 32 32 H 1.09000 * 109.46745 * 179.97438 * 1 2 3 33 33 H 0.96992 * 119.99993 * 120.00181 * 3 2 1 34 34 H 1.09004 * 109.71000 * 299.10741 * 8 6 4 35 35 H 1.08996 * 109.70958 * 59.69198 * 8 6 4 36 36 H 1.08002 * 119.96596 * 0.12689 * 11 10 9 37 37 H 1.08001 * 119.94293 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.94205 * 179.97438 * 13 12 11 39 39 H 1.07992 * 119.97171 * 180.02562 * 14 13 12 40 40 H 1.08997 * 109.49877 * 298.56688 * 17 2 1 41 41 H 1.08994 * 109.49809 * 58.66492 * 17 2 1 42 42 H 1.09001 * 109.60277 * 294.86735 * 18 17 2 43 43 H 1.09003 * 109.70583 * 174.50208 * 18 17 2 44 44 H 0.96998 * 119.99571 * 180.02562 * 23 22 20 45 45 H 1.08996 * 109.59043 * 293.82464 * 28 19 18 46 46 H 1.08999 * 109.58803 * 173.39269 * 28 19 18 47 47 H 1.08998 * 109.49808 * 301.34079 * 29 2 1 48 48 H 1.09003 * 109.49795 * 61.40163 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6923 2.2111 -1.0109 5 8 0.9948 1.8144 -1.9202 6 6 2.1949 3.6318 -1.0112 7 1 1.9087 4.1230 -0.0811 8 6 3.7230 3.6403 -1.1521 9 8 4.1645 5.0023 -1.1625 10 6 3.4761 5.8624 -1.9617 11 6 4.0460 7.0804 -2.3013 12 6 3.3579 7.9655 -3.1093 13 6 2.1002 7.6394 -3.5819 14 6 1.5274 6.4267 -3.2488 15 6 2.2128 5.5336 -2.4385 16 8 1.6374 4.3409 -2.1231 17 6 2.0399 -0.7209 -1.2500 18 6 3.5714 -0.6884 -1.2643 19 7 4.0679 -1.2488 0.0000 20 6 4.9758 -2.2740 0.0000 21 1 5.0049 -2.9695 0.8256 22 6 5.8586 -2.4192 -1.0614 23 7 6.0710 -1.4131 -1.8831 24 14 6.7453 -4.0423 -1.3235 25 1 5.9782 -4.8760 -2.2836 26 1 8.1024 -3.7829 -1.8674 27 1 6.8599 -4.7585 -0.0276 28 6 3.5714 -0.6887 1.2642 29 6 2.0399 -0.7209 1.2501 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.5757 1.6986 0.7274 34 1 4.1728 3.1144 -0.3099 35 1 4.0089 3.1534 -2.0844 36 1 5.0284 7.3376 -1.9336 37 1 3.8035 8.9136 -3.3722 38 1 1.5647 8.3333 -4.2128 39 1 0.5451 6.1741 -3.6196 40 1 1.6978 -1.7558 -1.2380 41 1 1.6573 -0.2211 -2.1397 42 1 3.9144 0.3411 -1.3673 43 1 3.9439 -1.2828 -2.0986 44 1 6.6877 -1.5148 -2.6249 45 1 3.9142 0.3408 1.3675 46 1 3.9416 -1.2847 2.0984 47 1 1.6572 -0.2209 2.1398 48 1 1.6973 -1.7556 1.2385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045634969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:05 Heat of formation + Delta-G solvation = -50.677723 kcal Electronic energy + Delta-G solvation = -31825.270401 eV Core-core repulsion = 27653.818887 eV Total energy + Delta-G solvation = -4171.451515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.54244 -40.09747 -37.99323 -37.50920 -36.95121 -34.49736 -32.65139 -31.45558 -30.78967 -30.48412 -29.97150 -28.52290 -27.49770 -25.41229 -24.14928 -22.99798 -22.41506 -22.09984 -21.03358 -20.30125 -19.01099 -18.66709 -17.95207 -17.49836 -16.81910 -16.39524 -15.62545 -15.30229 -14.93431 -14.89529 -14.82449 -14.55334 -14.22724 -13.98276 -13.89422 -13.87611 -13.52085 -13.41041 -13.31910 -13.08151 -12.42264 -12.26500 -12.07087 -11.94254 -11.68086 -11.50502 -11.47410 -11.26659 -11.15672 -10.99673 -10.77445 -10.67267 -10.40690 -10.32299 -10.02195 -9.80638 -9.65419 -9.20787 -8.80844 -8.75705 -8.50264 -8.20388 -6.72730 -5.83289 -3.26241 1.14350 1.15959 2.50225 2.58423 2.98509 3.35388 3.42799 3.43708 3.54386 3.61939 4.06344 4.45543 4.46309 4.57894 4.63002 4.82234 4.98473 5.11065 5.17451 5.23257 5.27283 5.28980 5.33469 5.43363 5.45746 5.52870 5.68564 5.87545 5.91837 5.97744 6.03914 6.05135 6.11228 6.26570 6.29747 6.35801 6.44287 6.46622 6.59414 6.64270 6.68759 6.77626 6.83040 6.95714 7.26776 7.32789 7.61541 7.67326 7.76230 8.31585 8.40217 9.16479 9.79724 10.35715 11.24761 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.003181 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.210330 B = 8800.532630 C =10044.465405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.186 3.814 3 N -0.704 5.704 4 C 0.528 3.472 5 O -0.508 6.508 6 C 0.035 3.965 7 H 0.106 0.894 8 C 0.035 3.965 9 O -0.301 6.301 10 C 0.049 3.951 11 C -0.114 4.114 12 C -0.119 4.119 13 C -0.118 4.118 14 C -0.113 4.113 15 C 0.054 3.946 16 O -0.278 6.278 17 C -0.153 4.153 18 C 0.178 3.822 19 N -0.590 5.590 20 C -0.256 4.256 21 H 0.065 0.935 22 C 0.004 3.996 23 N -0.900 5.900 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.145 3.855 29 C -0.137 4.137 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.398 0.602 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.014 0.986 43 H 0.085 0.915 44 H 0.254 0.746 45 H 0.013 0.987 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 15.863 2.771 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.102 3.898 3 N -0.357 5.357 4 C 0.311 3.689 5 O -0.382 6.382 6 C -0.026 4.026 7 H 0.123 0.877 8 C -0.041 4.041 9 O -0.215 6.215 10 C 0.004 3.996 11 C -0.132 4.132 12 C -0.138 4.138 13 C -0.136 4.136 14 C -0.131 4.131 15 C 0.009 3.991 16 O -0.192 6.192 17 C -0.193 4.193 18 C 0.052 3.948 19 N -0.313 5.313 20 C -0.385 4.385 21 H 0.083 0.917 22 C -0.194 4.194 23 N -0.544 5.544 24 Si 0.731 3.269 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.019 3.981 29 C -0.177 4.177 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.233 0.767 34 H 0.149 0.851 35 H 0.109 0.891 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.032 0.968 43 H 0.103 0.897 44 H 0.064 0.936 45 H 0.030 0.970 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.026 15.485 2.004 18.035 hybrid contribution 0.823 -0.818 0.259 1.188 sum -8.203 14.667 2.263 16.957 Atomic orbital electron populations 1.22242 0.95191 1.02146 1.02419 1.20343 0.92724 0.79236 0.97521 1.45988 1.53097 1.12289 1.24293 1.19416 0.81323 0.85233 0.82969 1.90687 1.36661 1.75862 1.34980 1.22975 0.95184 0.93713 0.90729 0.87651 1.23621 0.92186 0.81651 1.06607 1.86348 1.54650 1.18686 1.61808 1.19002 0.90473 0.92887 0.97286 1.20461 1.00773 0.92212 0.99774 1.20907 0.95101 0.99559 0.98198 1.20903 0.95836 0.96027 1.00826 1.20456 1.00575 0.92448 0.99653 1.19042 0.91533 0.87668 1.00868 1.86406 1.55155 1.29961 1.47629 1.22605 1.00870 0.99334 0.96480 1.20685 0.87174 0.96822 0.90115 1.44066 1.48292 1.39633 0.99314 1.19176 1.09804 1.02927 1.06612 0.91682 1.25034 0.97149 0.97362 0.99904 1.70031 1.37367 1.28819 1.18183 0.86293 0.78783 0.83734 0.78046 1.21459 1.21792 1.20407 1.20869 0.90375 0.96172 0.90730 1.22353 0.99736 1.00652 0.94974 0.90790 0.93335 0.91973 0.76690 0.85082 0.89117 0.84749 0.85142 0.85116 0.84716 0.91902 0.91056 0.96792 0.89708 0.93627 0.96952 0.92462 0.92481 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.40 37.16 0.31 -2.03 16 2 C 0.19 2.96 0.66 -131.78 -0.09 2.87 16 3 N -0.70 -10.15 4.07 -47.57 -0.19 -10.35 16 4 C 0.53 8.32 6.61 -10.99 -0.07 8.25 16 5 O -0.51 -9.77 12.74 -14.15 -0.18 -9.95 16 6 C 0.03 0.48 3.44 -27.64 -0.09 0.38 16 7 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 8 C 0.04 0.48 6.53 37.40 0.24 0.73 16 9 O -0.30 -4.25 10.42 -32.84 -0.34 -4.59 16 10 C 0.05 0.66 6.49 -39.14 -0.25 0.41 16 11 C -0.11 -1.27 9.96 -39.43 -0.39 -1.67 16 12 C -0.12 -1.11 10.04 -39.59 -0.40 -1.51 16 13 C -0.12 -1.11 10.04 -39.59 -0.40 -1.51 16 14 C -0.11 -1.32 9.96 -39.42 -0.39 -1.71 16 15 C 0.05 0.76 6.49 -39.13 -0.25 0.51 16 16 O -0.28 -4.37 9.62 -47.09 -0.45 -4.82 16 17 C -0.15 -2.99 4.67 -26.61 -0.12 -3.11 16 18 C 0.18 4.12 5.06 -3.70 -0.02 4.10 16 19 N -0.59 -13.84 2.99 -172.32 -0.52 -14.36 16 20 C -0.26 -6.75 9.58 -15.06 -0.14 -6.89 16 21 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 22 C 0.00 0.12 4.90 -17.43 -0.09 0.04 16 23 N -0.90 -25.60 11.22 55.49 0.62 -24.98 16 24 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.15 2.70 6.24 -3.71 -0.02 2.67 16 29 C -0.14 -2.10 4.96 -26.61 -0.13 -2.23 16 30 H 0.07 1.20 6.17 -51.93 -0.32 0.88 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.40 4.88 7.16 -40.82 -0.29 4.58 16 34 H 0.13 1.58 8.04 -51.93 -0.42 1.16 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.07 1.47 6.20 -51.93 -0.32 1.15 16 42 H 0.01 0.34 7.74 -51.93 -0.40 -0.07 16 43 H 0.08 2.29 6.06 -51.93 -0.31 1.97 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.01 0.22 6.94 -51.93 -0.36 -0.14 16 46 H 0.06 1.06 7.93 -51.93 -0.41 0.64 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -31.88 377.66 -9.76 -41.64 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.04 Total: 6.03 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.31 Total: -0.70 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.09 Total: -49.68 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.98 Total: -19.36 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.88 -9.76 -41.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045634969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.039 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds