Wall clock time and date at job start Sat Apr 11 2020 07:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46020 * 2 1 4 4 C 1.34775 * 119.99819 * 299.99777 * 3 2 1 5 5 O 1.21280 * 120.00298 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99950 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.70243 * 304.99658 * 6 4 3 8 8 C 1.53469 * 109.71031 * 65.58368 * 6 4 3 9 9 O 1.43177 * 108.23772 * 179.42317 * 8 6 4 10 10 C 1.36107 * 116.70685 * 313.76700 * 9 8 6 11 11 C 1.38701 * 119.40214 * 197.26386 * 10 9 8 12 12 C 1.38190 * 120.06901 * 180.15635 * 11 10 9 13 13 C 1.38258 * 120.11227 * 359.96230 * 12 11 10 14 14 C 1.38191 * 120.11498 * 359.94604 * 13 12 11 15 15 C 1.38711 * 120.06453 * 0.04153 * 14 13 12 16 16 O 1.36123 * 119.37822 * 180.23667 * 15 14 13 17 17 C 1.53039 * 109.46079 * 240.02467 * 2 1 3 18 18 C 1.53195 * 109.31118 * 178.60007 * 17 2 1 19 19 N 1.46934 * 108.76476 * 54.65771 * 18 17 2 20 20 C 1.36937 * 120.63168 * 126.35971 * 19 18 17 21 21 H 1.07995 * 119.99999 * 208.02372 * 20 19 18 22 22 C 1.38814 * 119.99961 * 28.02269 * 20 19 18 23 23 N 1.31624 * 119.99964 * 17.52292 * 22 20 19 24 24 Si 1.86799 * 120.00169 * 197.52490 * 22 20 19 25 25 H 1.48504 * 109.47101 * 94.06380 * 24 22 20 26 26 H 1.48493 * 109.47316 * 214.06619 * 24 22 20 27 27 H 1.48501 * 109.46854 * 334.06738 * 24 22 20 28 28 C 1.46919 * 118.73758 * 306.38113 * 19 18 17 29 29 C 1.53045 * 109.46039 * 119.97028 * 2 1 3 30 30 H 1.08997 * 109.46647 * 60.00410 * 1 2 3 31 31 H 1.08999 * 109.47073 * 300.00124 * 1 2 3 32 32 H 1.09000 * 109.46745 * 179.97438 * 1 2 3 33 33 H 0.96992 * 119.99993 * 120.00181 * 3 2 1 34 34 H 1.09004 * 109.71000 * 299.10741 * 8 6 4 35 35 H 1.08996 * 109.70958 * 59.69198 * 8 6 4 36 36 H 1.08002 * 119.96596 * 0.12689 * 11 10 9 37 37 H 1.08001 * 119.94293 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.94205 * 179.97438 * 13 12 11 39 39 H 1.07992 * 119.97171 * 180.02562 * 14 13 12 40 40 H 1.08997 * 109.49877 * 298.56688 * 17 2 1 41 41 H 1.08994 * 109.49809 * 58.66492 * 17 2 1 42 42 H 1.09001 * 109.60277 * 294.86735 * 18 17 2 43 43 H 1.09003 * 109.70583 * 174.50208 * 18 17 2 44 44 H 0.96998 * 119.99571 * 180.02562 * 23 22 20 45 45 H 1.08996 * 109.59043 * 293.82464 * 28 19 18 46 46 H 1.08999 * 109.58803 * 173.39269 * 28 19 18 47 47 H 1.08998 * 109.49808 * 301.34079 * 29 2 1 48 48 H 1.09003 * 109.49795 * 61.40163 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6923 2.2111 -1.0109 5 8 0.9948 1.8144 -1.9202 6 6 2.1949 3.6318 -1.0112 7 1 1.9087 4.1230 -0.0811 8 6 3.7230 3.6403 -1.1521 9 8 4.1645 5.0023 -1.1625 10 6 3.4761 5.8624 -1.9617 11 6 4.0460 7.0804 -2.3013 12 6 3.3579 7.9655 -3.1093 13 6 2.1002 7.6394 -3.5819 14 6 1.5274 6.4267 -3.2488 15 6 2.2128 5.5336 -2.4385 16 8 1.6374 4.3409 -2.1231 17 6 2.0399 -0.7209 -1.2500 18 6 3.5714 -0.6884 -1.2643 19 7 4.0679 -1.2488 0.0000 20 6 4.9758 -2.2740 0.0000 21 1 5.0049 -2.9695 0.8256 22 6 5.8586 -2.4192 -1.0614 23 7 6.0710 -1.4131 -1.8831 24 14 6.7453 -4.0423 -1.3235 25 1 5.9782 -4.8760 -2.2836 26 1 8.1024 -3.7829 -1.8674 27 1 6.8599 -4.7585 -0.0276 28 6 3.5714 -0.6887 1.2642 29 6 2.0399 -0.7209 1.2501 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.5757 1.6986 0.7274 34 1 4.1728 3.1144 -0.3099 35 1 4.0089 3.1534 -2.0844 36 1 5.0284 7.3376 -1.9336 37 1 3.8035 8.9136 -3.3722 38 1 1.5647 8.3333 -4.2128 39 1 0.5451 6.1741 -3.6196 40 1 1.6978 -1.7558 -1.2380 41 1 1.6573 -0.2211 -2.1397 42 1 3.9144 0.3411 -1.3673 43 1 3.9439 -1.2828 -2.0986 44 1 6.6877 -1.5148 -2.6249 45 1 3.9142 0.3408 1.3675 46 1 3.9416 -1.2847 2.0984 47 1 1.6572 -0.2209 2.1398 48 1 1.6973 -1.7556 1.2385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045634969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:04 Heat of formation + Delta-G solvation = -69.831779 kcal Electronic energy + Delta-G solvation = -31826.100983 eV Core-core repulsion = 27653.818887 eV Total energy + Delta-G solvation = -4172.282097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.59358 -41.37298 -39.19435 -38.53905 -38.17154 -36.15619 -34.03762 -33.06695 -31.76339 -31.64498 -31.53661 -29.53939 -29.07550 -26.48167 -25.92080 -23.99637 -23.89163 -23.30567 -22.44708 -21.50345 -20.33825 -19.83571 -19.11299 -18.78242 -18.33547 -17.44345 -16.85898 -16.69774 -16.42826 -16.16922 -15.90876 -15.70489 -15.53715 -15.32799 -15.21698 -15.00964 -14.91598 -14.85078 -14.60780 -14.35578 -14.01285 -13.35802 -13.21455 -13.13306 -13.01879 -12.87437 -12.85633 -12.59964 -12.57815 -12.39413 -12.24399 -12.20705 -11.97849 -11.77493 -11.66415 -11.34324 -11.33095 -10.59188 -10.53671 -10.10752 -9.68181 -9.14988 -8.66522 -7.87379 -5.31686 0.27703 0.28086 1.34022 1.41719 1.44738 1.47352 1.55144 1.97064 2.47777 2.51113 2.72137 3.00915 3.27886 3.41130 3.52467 3.56476 3.71586 3.84825 3.96786 4.04365 4.10819 4.11630 4.24680 4.32320 4.41690 4.48302 4.52397 4.66343 4.69669 4.75304 4.82877 4.87393 4.93347 5.03687 5.14097 5.15711 5.17561 5.20158 5.33791 5.35703 5.48843 5.49418 5.56347 5.65316 5.68427 5.74227 5.78639 6.28650 6.38557 6.47499 7.10379 7.14926 7.87653 8.38171 9.18115 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.003181 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.210330 B = 8800.532630 C =10044.465405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.189 3.811 3 N -0.694 5.694 4 C 0.527 3.473 5 O -0.547 6.547 6 C 0.042 3.958 7 H 0.135 0.865 8 C 0.041 3.959 9 O -0.308 6.308 10 C 0.020 3.980 11 C -0.120 4.120 12 C -0.109 4.109 13 C -0.108 4.108 14 C -0.125 4.125 15 C 0.025 3.975 16 O -0.305 6.305 17 C -0.141 4.141 18 C 0.192 3.808 19 N -0.606 5.606 20 C -0.257 4.257 21 H 0.070 0.930 22 C -0.051 4.051 23 N -0.933 5.933 24 Si 0.960 3.040 25 H -0.292 1.292 26 H -0.298 1.298 27 H -0.264 1.264 28 C 0.138 3.862 29 C -0.123 4.123 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.411 0.589 34 H 0.146 0.854 35 H 0.060 0.940 36 H 0.148 0.852 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.140 0.860 40 H 0.057 0.943 41 H 0.054 0.946 42 H -0.003 1.003 43 H 0.039 0.961 44 H 0.246 0.754 45 H 0.027 0.973 46 H 0.061 0.939 47 H 0.101 0.899 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.552 17.572 4.604 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.104 3.896 3 N -0.347 5.347 4 C 0.312 3.688 5 O -0.424 6.424 6 C -0.018 4.018 7 H 0.153 0.847 8 C -0.035 4.035 9 O -0.222 6.222 10 C -0.025 4.025 11 C -0.139 4.139 12 C -0.127 4.127 13 C -0.126 4.126 14 C -0.144 4.144 15 C -0.020 4.020 16 O -0.219 6.219 17 C -0.181 4.181 18 C 0.066 3.934 19 N -0.330 5.330 20 C -0.387 4.387 21 H 0.088 0.912 22 C -0.246 4.246 23 N -0.579 5.579 24 Si 0.789 3.211 25 H -0.219 1.219 26 H -0.225 1.225 27 H -0.189 1.189 28 C 0.013 3.987 29 C -0.162 4.162 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.249 0.751 34 H 0.164 0.836 35 H 0.078 0.922 36 H 0.166 0.834 37 H 0.185 0.815 38 H 0.184 0.816 39 H 0.158 0.842 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.015 0.985 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.045 0.955 46 H 0.080 0.920 47 H 0.119 0.881 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.933 17.206 3.896 20.246 hybrid contribution 1.097 -1.237 -0.352 1.691 sum -8.836 15.969 3.544 18.591 Atomic orbital electron populations 1.22134 0.93398 1.02877 1.02656 1.20267 0.93979 0.79487 0.95847 1.45875 1.52843 1.11593 1.24406 1.19776 0.80563 0.86065 0.82419 1.90671 1.38555 1.76753 1.36426 1.22973 0.94687 0.92514 0.91650 0.84741 1.23497 0.92517 0.81885 1.05592 1.86323 1.55061 1.18533 1.62321 1.19363 0.90833 0.93815 0.98470 1.20825 1.01560 0.91595 0.99913 1.21380 0.94698 1.00276 0.96363 1.21355 0.95894 0.95319 0.99984 1.20771 1.01043 0.93132 0.99429 1.19396 0.92365 0.87692 1.02511 1.86342 1.55967 1.31077 1.48507 1.22401 0.97968 0.99514 0.98255 1.20331 0.89351 0.94716 0.89009 1.44267 1.48109 1.39645 1.00963 1.19524 1.09317 1.03619 1.06288 0.91216 1.25740 0.98633 1.00010 1.00260 1.70186 1.38431 1.30559 1.18750 0.85352 0.77138 0.80420 0.78158 1.21927 1.22491 1.18869 1.21113 0.92596 0.96613 0.88348 1.22230 0.96863 1.01077 0.96076 0.92906 0.90697 0.91028 0.75124 0.83626 0.92209 0.83392 0.81466 0.81622 0.84182 0.92416 0.92731 0.98495 0.94283 0.94481 0.95497 0.92049 0.88106 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 8.40 71.98 0.60 -3.49 16 2 C 0.19 5.74 0.66 3.63 0.00 5.75 16 3 N -0.69 -19.27 4.07 -422.80 -1.72 -20.99 16 4 C 0.53 16.81 6.61 87.66 0.58 17.39 16 5 O -0.55 -21.81 12.74 15.82 0.20 -21.61 16 6 C 0.04 1.17 3.44 30.01 0.10 1.27 16 7 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 8 C 0.04 1.17 6.53 72.14 0.47 1.64 16 9 O -0.31 -8.84 10.42 -82.56 -0.86 -9.70 16 10 C 0.02 0.54 6.49 22.56 0.15 0.69 16 11 C -0.12 -2.53 9.96 22.37 0.22 -2.30 16 12 C -0.11 -1.70 10.04 22.26 0.22 -1.47 16 13 C -0.11 -1.74 10.04 22.26 0.22 -1.51 16 14 C -0.13 -2.84 9.96 22.37 0.22 -2.62 16 15 C 0.02 0.71 6.49 22.56 0.15 0.86 16 16 O -0.30 -9.89 9.62 -69.18 -0.67 -10.56 16 17 C -0.14 -5.65 4.67 30.67 0.14 -5.50 16 18 C 0.19 9.25 5.06 86.36 0.44 9.68 16 19 N -0.61 -28.56 2.99 -699.09 -2.09 -30.65 16 20 C -0.26 -13.65 9.58 84.03 0.81 -12.84 16 21 H 0.07 3.58 7.89 -2.91 -0.02 3.55 16 22 C -0.05 -2.82 4.90 84.86 0.42 -2.41 16 23 N -0.93 -55.30 11.22 21.65 0.24 -55.05 16 24 Si 0.96 44.89 29.59 68.60 2.03 46.92 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 27 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 28 C 0.14 4.87 6.24 86.36 0.54 5.41 16 29 C -0.12 -3.38 4.96 30.67 0.15 -3.23 16 30 H 0.05 1.68 6.17 -2.39 -0.01 1.66 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.41 9.20 7.16 -92.71 -0.66 8.54 16 34 H 0.15 3.56 8.04 -2.38 -0.02 3.54 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 40 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.05 2.36 6.20 -2.39 -0.01 2.35 16 42 H 0.00 -0.15 7.74 -2.39 -0.02 -0.17 16 43 H 0.04 2.23 6.06 -2.39 -0.01 2.21 16 44 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 45 H 0.03 0.89 6.94 -2.39 -0.02 0.87 16 46 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 47 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -73.39 377.66 2.89 -70.50 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.32 Total: 23.84 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 5.44 Total: 7.31 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -3.57 Total: -106.70 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -1.32 Total: -41.87 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -73.39 2.89 -70.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045634969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.672 kcal (2) G-P(sol) polarization free energy of solvation -73.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds