Wall clock time and date at job start Sat Apr 11 2020 07:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.46136 * 2 1 4 4 C 1.34777 * 119.99629 * 60.02920 * 3 2 1 5 5 O 1.21585 * 120.00043 * 359.97438 * 4 3 2 6 6 C 1.47604 * 119.99757 * 180.02562 * 4 3 2 7 7 C 1.39701 * 120.10047 * 359.97438 * 6 4 3 8 8 C 1.37723 * 119.96610 * 180.02562 * 7 6 4 9 9 C 1.39010 * 120.27505 * 359.96901 * 8 7 6 10 10 C 1.39261 * 120.03767 * 359.94904 * 9 8 7 11 11 C 1.38283 * 119.96627 * 359.83855 * 10 9 8 12 12 O 1.36146 * 120.75612 * 180.21331 * 10 9 8 13 13 C 1.43177 * 116.69346 * 342.75306 * 12 10 9 14 14 C 1.53466 * 108.21873 * 46.23254 * 13 12 10 15 15 O 1.35960 * 119.24005 * 179.80428 * 9 8 7 16 16 C 1.53046 * 109.45850 * 240.02693 * 2 1 3 17 17 C 1.53187 * 109.31183 * 178.61271 * 16 2 1 18 18 N 1.46927 * 108.77406 * 54.63732 * 17 16 2 19 19 C 1.36943 * 120.63120 * 126.36883 * 18 17 16 20 20 H 1.08000 * 119.99888 * 332.45081 * 19 18 17 21 21 C 1.38811 * 119.99955 * 152.45061 * 19 18 17 22 22 N 1.31614 * 120.00254 * 342.76805 * 21 19 18 23 23 Si 1.86801 * 119.99678 * 162.77313 * 21 19 18 24 24 H 1.48501 * 109.46686 * 269.99566 * 23 21 19 25 25 H 1.48499 * 109.47518 * 29.99570 * 23 21 19 26 26 H 1.48502 * 109.46873 * 149.99729 * 23 21 19 27 27 C 1.46923 * 118.73893 * 306.64252 * 18 17 16 28 28 C 1.52755 * 109.00900 * 53.31139 * 27 18 17 29 29 H 1.09004 * 109.47208 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47311 * 299.96926 * 1 2 3 31 31 H 1.08999 * 109.47428 * 59.97612 * 1 2 3 32 32 H 0.96996 * 120.00068 * 240.02993 * 3 2 1 33 33 H 1.07997 * 120.01889 * 0.07801 * 7 6 4 34 34 H 1.08003 * 119.86425 * 179.97438 * 8 7 6 35 35 H 1.07999 * 120.02571 * 180.20400 * 11 10 9 36 36 H 1.08996 * 109.71329 * 286.55514 * 13 12 10 37 37 H 1.09000 * 109.71296 * 165.91522 * 13 12 10 38 38 H 1.08994 * 109.70788 * 180.49326 * 14 13 12 39 39 H 1.09009 * 109.74057 * 59.89603 * 14 13 12 40 40 H 1.09004 * 109.49497 * 58.66506 * 16 2 1 41 41 H 1.08995 * 109.52949 * 298.58412 * 16 2 1 42 42 H 1.09004 * 109.59162 * 294.84964 * 17 16 2 43 43 H 1.08995 * 109.70522 * 174.49161 * 17 16 2 44 44 H 0.96995 * 120.00322 * 180.02562 * 22 21 19 45 45 H 1.09005 * 109.58782 * 173.14413 * 27 18 17 46 46 H 1.09006 * 109.58879 * 293.56697 * 27 18 17 47 47 H 1.09007 * 109.56573 * 185.55521 * 28 27 18 48 48 H 1.08998 * 109.38819 * 65.51098 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2109 1.0112 5 8 0.9939 1.8130 1.9231 6 6 2.1841 3.6027 1.0109 7 6 2.9868 4.0622 -0.0361 8 6 3.4441 5.3613 -0.0333 9 6 3.1099 6.2197 1.0078 10 6 2.3086 5.7683 2.0536 11 6 1.8427 4.4663 2.0544 12 8 1.9688 6.5976 3.0784 13 6 2.7543 7.7847 3.2326 14 6 2.9193 8.4336 1.8517 15 8 3.5762 7.4967 0.9914 16 6 2.0398 -0.7209 -1.2501 17 6 3.5713 -0.6887 -1.2643 18 7 4.0678 -1.2489 0.0001 19 6 4.9757 -2.2741 0.0002 20 1 5.0097 -2.9653 -0.8289 21 6 5.8522 -2.4248 1.0659 22 7 6.0554 -1.4250 1.8974 23 14 6.7436 -4.0466 1.3198 24 1 5.9260 -4.9298 2.1898 25 1 6.9566 -4.7055 0.0062 26 1 8.0568 -3.7939 1.9655 27 6 3.5671 -0.6923 1.2642 28 6 2.0399 -0.7207 1.2501 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5134 0.8903 31 1 -0.3634 0.5142 -0.8897 32 1 2.5753 1.6988 -0.7277 33 1 3.2479 3.3993 -0.8477 34 1 4.0649 5.7147 -0.8433 35 1 1.2185 4.1162 2.8632 36 1 3.7331 7.5279 3.6374 37 1 2.2473 8.4762 3.9056 38 1 3.5225 9.3371 1.9398 39 1 1.9402 8.6838 1.4430 40 1 1.6572 -0.2209 -2.1399 41 1 1.6978 -1.7558 -1.2388 42 1 3.9143 0.3408 -1.3675 43 1 3.9437 -1.2832 -2.0985 44 1 6.6682 -1.5302 2.6419 45 1 3.9346 -1.2906 2.0980 46 1 3.9097 0.3370 1.3715 47 1 1.6572 -0.2205 2.1399 48 1 1.6973 -1.7554 1.2387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045638502.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:08 Heat of formation + Delta-G solvation = -53.244463 kcal Electronic energy + Delta-G solvation = -31364.753930 eV Core-core repulsion = 27193.191113 eV Total energy + Delta-G solvation = -4171.562817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.48155 -40.14812 -38.01029 -37.50190 -36.80783 -34.38904 -32.34762 -31.39944 -30.87452 -30.57802 -29.87977 -28.56474 -27.40059 -25.29188 -24.10320 -23.40630 -22.26834 -22.10377 -21.02993 -20.18213 -19.00787 -18.63195 -17.88484 -17.44308 -16.90499 -16.30176 -15.65967 -15.30937 -14.93955 -14.85560 -14.69733 -14.56684 -14.12544 -14.01402 -13.99342 -13.81281 -13.45351 -13.37566 -13.21268 -12.98672 -12.67055 -12.33739 -12.01939 -11.80847 -11.57252 -11.37589 -11.36368 -11.34465 -11.04749 -10.90748 -10.72674 -10.70700 -10.34049 -10.20342 -9.94025 -9.73800 -9.52915 -9.10752 -8.82059 -8.57150 -8.42055 -8.24274 -6.63284 -5.74559 -3.17530 0.77034 1.17296 2.67547 2.91095 3.01919 3.40231 3.47060 3.47967 3.55321 3.87501 3.90227 4.37459 4.47168 4.52277 4.56444 4.82777 4.84668 5.01862 5.11346 5.12286 5.23792 5.33095 5.38745 5.44414 5.56230 5.63784 5.65891 5.92261 5.97022 5.99025 6.06430 6.15645 6.20087 6.22361 6.33669 6.41391 6.49486 6.57296 6.63464 6.68666 6.77835 6.86162 6.96680 7.12819 7.16886 7.46697 7.75424 7.83445 7.93045 8.48653 8.58640 9.25061 9.88681 10.45066 11.33238 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013716 B = 0.002923 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.937344 B = 9575.658886 C =10487.216526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.185 3.815 3 N -0.703 5.703 4 C 0.564 3.436 5 O -0.535 6.535 6 C -0.123 4.123 7 C -0.077 4.077 8 C -0.120 4.120 9 C 0.070 3.930 10 C 0.039 3.961 11 C -0.053 4.053 12 O -0.305 6.305 13 C 0.020 3.980 14 C 0.020 3.980 15 O -0.305 6.305 16 C -0.138 4.138 17 C 0.146 3.854 18 N -0.591 5.591 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.899 5.899 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.280 1.280 26 H -0.292 1.292 27 C 0.177 3.823 28 C -0.152 4.152 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.396 0.604 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.013 0.987 43 H 0.055 0.945 44 H 0.253 0.747 45 H 0.084 0.916 46 H 0.016 0.984 47 H 0.072 0.928 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.896 18.904 -3.212 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.100 3.900 3 N -0.355 5.355 4 C 0.351 3.649 5 O -0.414 6.414 6 C -0.126 4.126 7 C -0.096 4.096 8 C -0.139 4.139 9 C 0.024 3.976 10 C -0.006 4.006 11 C -0.072 4.072 12 O -0.220 6.220 13 C -0.056 4.056 14 C -0.056 4.056 15 O -0.220 6.220 16 C -0.177 4.177 17 C 0.019 3.981 18 N -0.313 5.313 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.544 5.544 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.205 1.205 26 H -0.218 1.218 27 C 0.052 3.948 28 C -0.191 4.191 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.232 0.768 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.097 0.903 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.030 0.970 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.102 0.898 46 H 0.035 0.965 47 H 0.091 0.909 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.254 18.645 -2.411 20.954 hybrid contribution 0.933 -0.369 -0.044 1.005 sum -8.320 18.276 -2.456 20.230 Atomic orbital electron populations 1.22231 0.95356 1.01894 1.02384 1.20292 0.92623 0.79868 0.97267 1.45995 1.52789 1.12145 1.24535 1.17882 0.80234 0.84539 0.82231 1.90703 1.38318 1.76748 1.35602 1.19780 1.01805 0.94585 0.96428 1.21100 0.95737 0.94882 0.97872 1.20328 1.03142 0.92896 0.97493 1.19121 0.98603 0.85136 0.94712 1.18696 1.01684 0.91548 0.88665 1.20449 0.99273 0.88657 0.98851 1.86348 1.55256 1.32899 1.47479 1.23639 0.97663 0.86616 0.97679 1.23654 0.99712 0.92099 0.90093 1.86277 1.56617 1.16431 1.62626 1.22342 0.99670 1.00583 0.95146 1.20857 0.90442 0.96167 0.90640 1.44056 1.48165 1.39722 0.99402 1.19174 1.09992 1.03051 1.06150 0.91742 1.25031 0.97280 0.97351 0.99905 1.70043 1.37658 1.29007 1.17648 0.86314 0.78808 0.83833 0.77933 1.21477 1.20494 1.21836 1.20604 0.87282 0.97038 0.89921 1.22518 1.00828 0.99105 0.96681 0.92219 0.90722 0.93470 0.76795 0.84501 0.84173 0.83406 0.90301 0.85997 0.86008 0.90366 0.92602 0.90622 0.96959 0.92612 0.93689 0.89804 0.96547 0.90931 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.40 37.16 0.31 -2.14 16 2 C 0.18 3.14 0.66 -131.77 -0.09 3.05 16 3 N -0.70 -11.21 4.05 -48.57 -0.20 -11.41 16 4 C 0.56 9.58 7.18 -12.44 -0.09 9.50 16 5 O -0.54 -10.48 12.55 5.29 0.07 -10.41 16 6 C -0.12 -1.82 5.87 -104.99 -0.62 -2.43 16 7 C -0.08 -0.96 9.53 -39.22 -0.37 -1.33 16 8 C -0.12 -1.41 9.94 -39.48 -0.39 -1.80 16 9 C 0.07 0.87 6.51 -38.92 -0.25 0.62 16 10 C 0.04 0.52 6.48 -39.18 -0.25 0.26 16 11 C -0.05 -0.77 9.50 -39.03 -0.37 -1.14 16 12 O -0.31 -3.65 10.42 -32.96 -0.34 -4.00 16 13 C 0.02 0.15 7.26 37.40 0.27 0.42 16 14 C 0.02 0.14 7.26 37.40 0.27 0.41 16 15 O -0.31 -3.33 10.41 -32.37 -0.34 -3.67 16 16 C -0.14 -2.24 4.96 -26.61 -0.13 -2.38 16 17 C 0.15 2.87 6.25 -3.71 -0.02 2.84 16 18 N -0.59 -14.53 3.00 -172.58 -0.52 -15.05 16 19 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 20 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 21 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 22 N -0.90 -26.43 11.19 55.49 0.62 -25.80 16 23 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 27 C 0.18 4.33 5.03 -3.94 -0.02 4.31 16 28 C -0.15 -3.12 4.65 -26.83 -0.12 -3.24 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.26 6.16 -51.93 -0.32 0.94 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.40 5.57 5.29 -40.82 -0.22 5.35 16 33 H 0.14 1.44 6.39 -52.49 -0.34 1.10 16 34 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.15 2.21 7.64 -52.49 -0.40 1.81 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.01 0.24 6.94 -51.93 -0.36 -0.12 16 43 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 45 H 0.08 2.35 6.04 -51.93 -0.31 2.04 16 46 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 47 H 0.07 1.56 6.20 -51.92 -0.32 1.24 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -33.27 374.35 -9.07 -42.34 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.86 Total: 5.64 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.11 Total: -0.12 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.09 Total: -52.26 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.61 Total: -18.08 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.27 -9.07 -42.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045638502.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.904 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds