Wall clock time and date at job start Sat Apr 11 2020 07:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35960 * 120.57040 * 2 1 4 4 C 1.40840 * 119.34147 * 180.02562 * 3 2 1 5 5 O 1.21854 * 119.75829 * 180.02562 * 4 3 2 6 6 O 1.34384 * 120.48748 * 359.97438 * 4 3 2 7 7 C 1.33727 * 121.20146 * 359.74246 * 6 4 3 8 8 C 1.50708 * 119.68597 * 180.26180 * 7 6 4 9 9 C 1.37586 * 120.62225 * 0.52120 * 7 6 4 10 10 C 1.47525 * 120.25904 * 179.75923 * 9 7 6 11 11 O 1.21594 * 119.99927 * 269.72763 * 10 9 7 12 12 N 1.34997 * 119.99994 * 89.72238 * 10 9 7 13 13 C 1.44776 * 119.96164 * 0.02562 * 12 10 9 14 14 C 1.51433 * 113.12934 * 267.17894 * 13 12 10 15 15 C 1.51256 * 114.05687 * 294.83597 * 14 13 12 16 16 H 1.09652 * 110.76261 * 179.65077 * 15 14 13 17 17 C 1.54124 * 108.44920 * 301.71565 * 15 14 13 18 18 C 1.53996 * 104.79408 * 92.37919 * 17 15 14 19 19 C 1.52093 * 105.53452 * 11.65176 * 18 17 15 20 20 H 1.09431 * 108.24154 * 122.99001 * 19 18 17 21 21 C 1.49251 * 119.96363 * 179.57914 * 12 10 9 22 22 N 1.47729 * 109.54214 * 5.24017 * 19 18 17 23 23 C 1.37138 * 127.14995 * 158.95081 * 22 19 18 24 24 H 1.08002 * 119.99601 * 180.02562 * 23 22 19 25 25 C 1.38807 * 119.99909 * 0.02622 * 23 22 19 26 26 N 1.31616 * 120.00270 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99790 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47111 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.46995 * 119.99913 * 27 25 23 30 30 H 1.48498 * 109.47148 * 240.00023 * 27 25 23 31 31 H 1.08999 * 109.46859 * 269.97808 * 1 2 3 32 32 H 1.08995 * 109.46628 * 29.97667 * 1 2 3 33 33 H 1.08995 * 109.47253 * 149.97848 * 1 2 3 34 34 H 1.07994 * 120.33047 * 0.03965 * 3 2 1 35 35 H 1.09001 * 109.46688 * 270.26228 * 8 7 6 36 36 H 1.08996 * 109.47218 * 30.25896 * 8 7 6 37 37 H 1.08999 * 109.47000 * 150.26305 * 8 7 6 38 38 H 1.08871 * 109.25529 * 145.15277 * 13 12 10 39 39 H 1.09370 * 108.41767 * 27.57464 * 13 12 10 40 40 H 1.09172 * 108.78691 * 56.35950 * 14 13 12 41 41 H 1.09258 * 108.56746 * 173.63414 * 14 13 12 42 42 H 1.09307 * 110.69002 * 333.15252 * 17 15 14 43 43 H 1.09345 * 110.60150 * 211.46973 * 17 15 14 44 44 H 1.09048 * 110.67051 * 252.04197 * 18 17 15 45 45 H 1.09287 * 110.26508 * 130.56708 * 18 17 15 46 46 H 1.09127 * 109.54837 * 256.92388 * 21 12 10 47 47 H 1.09173 * 109.47409 * 16.51030 * 21 12 10 48 48 H 0.97001 * 120.00214 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1706 0.0000 4 6 3.6066 1.1404 -0.0005 5 8 4.2339 2.1850 -0.0001 6 8 4.2634 -0.0320 -0.0006 7 6 3.6041 -1.1954 0.0051 8 6 4.3752 -2.4903 0.0109 9 6 2.2285 -1.2214 0.0003 10 6 1.5093 -2.5095 0.0013 11 8 1.2123 -3.0408 -1.0514 12 7 1.1811 -3.0985 1.1708 13 6 1.5348 -2.4650 2.4237 14 6 2.8660 -2.9341 2.9724 15 6 2.8902 -4.3941 3.3672 16 1 3.8779 -4.6768 3.7503 17 6 1.7973 -4.6307 4.4279 18 6 0.5553 -5.0583 3.6241 19 6 1.0566 -5.3319 2.2145 20 1 0.7919 -6.3603 1.9503 21 6 0.4453 -4.3970 1.1709 22 7 2.5287 -5.2119 2.1816 23 6 3.3830 -5.7505 1.2538 24 1 4.4472 -5.5893 1.3421 25 6 2.8798 -6.5027 0.2013 26 7 1.5828 -6.6987 0.0935 27 14 4.0435 -7.2357 -1.0629 28 1 5.4413 -6.8715 -0.7188 29 1 3.9040 -8.7142 -1.0655 30 1 3.7101 -6.7047 -2.4090 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3632 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5141 34 1 1.6733 2.1143 0.0006 35 1 4.5648 -2.8048 -1.0154 36 1 5.3239 -2.3459 0.5277 37 1 3.7946 -3.2566 0.5244 38 1 0.7541 -2.6593 3.1572 39 1 1.5874 -1.3846 2.2619 40 1 3.6371 -2.7623 2.2190 41 1 3.1120 -2.3320 3.8503 42 1 1.5961 -3.7130 4.9865 43 1 2.0973 -5.4229 5.1193 44 1 -0.1912 -4.2634 3.6171 45 1 0.1215 -5.9656 4.0518 46 1 -0.6054 -4.2213 1.4077 47 1 0.5167 -4.8559 0.1828 48 1 1.2312 -7.2247 -0.6418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045810998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:11 Heat of formation + Delta-G solvation = -36.873114 kcal Electronic energy + Delta-G solvation = -33894.214482 eV Core-core repulsion = 29723.361581 eV Total energy + Delta-G solvation = -4170.852902 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.04779 -39.93358 -38.20984 -37.64639 -35.80700 -34.31523 -33.04612 -32.72993 -31.57180 -29.48700 -28.89854 -28.25882 -26.93042 -25.78838 -24.37747 -23.79250 -22.33235 -21.97886 -20.28600 -19.34945 -19.09032 -18.18366 -17.26044 -17.03422 -16.80861 -16.44543 -15.67203 -15.05242 -14.89467 -14.65306 -14.37268 -13.98236 -13.92250 -13.73083 -13.63161 -13.52899 -13.26718 -13.03671 -12.66265 -12.51249 -12.32232 -12.21145 -12.14899 -11.98177 -11.67688 -11.55068 -11.40474 -11.26425 -11.00670 -10.89174 -10.81852 -10.43809 -10.25829 -10.21315 -9.96055 -9.78274 -9.66766 -9.54185 -9.23216 -8.73899 -8.28286 -7.85876 -6.95285 -5.80161 -3.17790 0.44391 1.43780 2.30674 3.07044 3.17196 3.34774 3.38836 3.44722 3.64264 4.20721 4.29301 4.38924 4.69147 4.85837 5.06935 5.14133 5.19251 5.33470 5.35378 5.39065 5.43339 5.45165 5.55581 5.58284 5.64038 5.65581 5.76148 5.81714 5.81952 6.00179 6.04694 6.07190 6.12954 6.18507 6.22687 6.32443 6.43231 6.50757 6.59783 6.70247 6.87686 6.91920 7.14333 7.16105 7.40767 7.50255 7.55004 7.75338 8.12533 8.17043 8.76239 9.09302 9.69223 10.39066 11.26886 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.011807 B = 0.005269 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.897115 B = 5312.425137 C = 6056.685916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.064 3.936 3 C -0.291 4.291 4 C 0.498 3.502 5 O -0.486 6.486 6 O -0.257 6.257 7 C 0.190 3.810 8 C -0.136 4.136 9 C -0.253 4.253 10 C 0.576 3.424 11 O -0.526 6.526 12 N -0.570 5.570 13 C 0.121 3.879 14 C -0.159 4.159 15 C 0.155 3.845 16 H 0.058 0.942 17 C -0.126 4.126 18 C -0.130 4.130 19 C 0.156 3.844 20 H 0.105 0.895 21 C 0.114 3.886 22 N -0.579 5.579 23 C -0.221 4.221 24 H 0.078 0.922 25 C 0.002 3.998 26 N -0.909 5.909 27 Si 0.904 3.096 28 H -0.281 1.281 29 H -0.291 1.291 30 H -0.289 1.289 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.159 0.841 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.138 0.862 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.029 0.971 47 H 0.128 0.872 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.199 8.784 6.211 11.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.062 3.938 3 C -0.311 4.311 4 C 0.351 3.649 5 O -0.377 6.377 6 O -0.166 6.166 7 C 0.141 3.859 8 C -0.191 4.191 9 C -0.258 4.258 10 C 0.361 3.639 11 O -0.403 6.403 12 N -0.301 5.301 13 C -0.003 4.003 14 C -0.200 4.200 15 C 0.047 3.953 16 H 0.076 0.924 17 C -0.165 4.165 18 C -0.169 4.169 19 C 0.049 3.951 20 H 0.123 0.877 21 C -0.008 4.008 22 N -0.302 5.302 23 C -0.348 4.348 24 H 0.095 0.905 25 C -0.195 4.195 26 N -0.557 5.557 27 Si 0.734 3.266 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.215 1.215 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.177 0.823 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.156 0.844 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.047 0.953 47 H 0.145 0.855 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.838 8.822 5.441 10.746 hybrid contribution 0.492 -0.084 -0.600 0.780 sum -2.346 8.738 4.842 10.262 Atomic orbital electron populations 1.21049 0.89312 1.04527 1.03762 1.20316 0.97395 0.90770 0.85307 1.22141 0.92700 1.00002 1.16220 1.19252 0.88436 0.80834 0.76356 1.90972 1.71030 1.25975 1.49715 1.83403 1.44790 1.14683 1.73735 1.23041 0.90737 0.85132 0.86998 1.21589 1.01777 0.89826 1.05943 1.20053 0.92737 0.96186 1.16811 1.17414 0.79121 0.82821 0.84579 1.90809 1.54417 1.64056 1.31001 1.48037 1.55402 1.22903 1.03797 1.20667 0.97420 0.95318 0.86915 1.22211 0.97733 0.99697 1.00317 1.21002 0.96250 0.89484 0.88562 0.92409 1.22487 0.96419 1.00027 0.97532 1.22234 0.96836 0.99992 0.97796 1.21017 0.84357 1.00745 0.89001 0.87710 1.23390 0.90484 0.80667 1.06253 1.44854 1.01134 1.58596 1.25595 1.18951 0.88637 1.25537 1.01695 0.90467 1.24633 0.95925 1.00435 0.98488 1.69665 1.10057 1.43377 1.32570 0.86175 0.79702 0.78885 0.81805 1.20629 1.21780 1.21546 0.89279 0.90002 0.89818 0.82304 0.88004 0.89224 0.84369 0.91035 0.92923 0.92091 0.92719 0.92362 0.92469 0.92687 0.92478 0.95287 0.85478 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 9.67 36.01 0.35 -1.08 16 2 C 0.06 0.86 5.48 -104.05 -0.57 0.29 16 3 C -0.29 -3.89 9.64 -39.42 -0.38 -4.27 16 4 C 0.50 8.03 7.93 31.72 0.25 8.28 16 5 O -0.49 -9.02 17.93 -19.60 -0.35 -9.38 16 6 O -0.26 -4.14 9.81 -17.64 -0.17 -4.31 16 7 C 0.19 3.02 6.73 -34.54 -0.23 2.79 16 8 C -0.14 -2.14 8.56 36.01 0.31 -1.84 16 9 C -0.25 -4.08 3.84 -104.96 -0.40 -4.49 16 10 C 0.58 10.86 4.10 -12.38 -0.05 10.80 16 11 O -0.53 -12.17 16.55 5.28 0.09 -12.08 16 12 N -0.57 -10.08 2.57 -174.73 -0.45 -10.52 16 13 C 0.12 1.78 4.86 -5.76 -0.03 1.75 16 14 C -0.16 -2.36 4.93 -28.40 -0.14 -2.50 16 15 C 0.15 2.60 3.83 -67.12 -0.26 2.34 16 16 H 0.06 0.99 8.20 -51.56 -0.42 0.56 16 17 C -0.13 -1.82 5.98 -25.62 -0.15 -1.98 16 18 C -0.13 -2.04 5.73 -26.67 -0.15 -2.20 16 19 C 0.16 3.09 2.27 -67.78 -0.15 2.93 16 20 H 0.11 2.47 6.24 -51.69 -0.32 2.15 16 21 C 0.11 2.26 5.71 -2.58 -0.01 2.25 16 22 N -0.58 -12.00 2.38 -156.13 -0.37 -12.37 16 23 C -0.22 -5.20 9.20 -14.97 -0.14 -5.34 16 24 H 0.08 1.80 7.83 -52.49 -0.41 1.39 16 25 C 0.00 0.05 5.49 -17.43 -0.10 -0.05 16 26 N -0.91 -23.40 8.25 55.49 0.46 -22.95 16 27 Si 0.90 20.75 29.55 -169.99 -5.02 15.73 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.08 1.09 7.18 -51.93 -0.37 0.71 16 34 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.14 2.55 4.15 -51.93 -0.22 2.34 16 38 H 0.07 0.97 5.46 -52.00 -0.28 0.68 16 39 H 0.05 0.70 6.35 -51.72 -0.33 0.38 16 40 H 0.06 0.97 4.63 -51.83 -0.24 0.73 16 41 H 0.05 0.69 8.15 -51.78 -0.42 0.27 16 42 H 0.06 0.71 7.65 -51.76 -0.40 0.32 16 43 H 0.06 0.82 8.17 -51.73 -0.42 0.39 16 44 H 0.05 0.77 6.47 -51.90 -0.34 0.44 16 45 H 0.06 0.87 8.17 -51.77 -0.42 0.45 16 46 H 0.03 0.52 7.91 -51.86 -0.41 0.11 16 47 H 0.13 3.09 5.10 -51.83 -0.26 2.82 16 48 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -28.82 362.86 -8.73 -37.55 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.52 Total: 5.15 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -1.86 Total: 7.71 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.36 Total: -45.84 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.44 Total: -25.77 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.82 -8.73 -37.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045810998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.681 kcal (2) G-P(sol) polarization free energy of solvation -28.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds