Wall clock time and date at job start Sat Apr 11 2020 07:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 110.88507 * 2 1 4 4 C 1.34777 * 119.99889 * 59.30136 * 3 2 1 5 5 O 1.21585 * 119.99682 * 359.97438 * 4 3 2 6 6 C 1.47611 * 119.99732 * 179.97438 * 4 3 2 7 7 C 1.39697 * 120.04886 * 359.97438 * 6 4 3 8 8 C 1.37875 * 120.07329 * 180.02562 * 7 6 4 9 9 C 1.38777 * 119.91025 * 359.97438 * 8 7 6 10 10 C 1.39020 * 120.29461 * 0.04166 * 9 8 7 11 11 C 1.38048 * 120.22020 * 359.97008 * 10 9 8 12 12 O 1.36503 * 119.57673 * 180.24632 * 10 9 8 13 13 C 1.43256 * 115.69444 * 291.52209 * 12 10 9 14 14 C 1.52065 * 110.71515 * 84.55863 * 13 12 10 15 15 C 1.52065 * 112.36445 * 295.10174 * 14 13 12 16 16 O 1.36322 * 120.14599 * 180.10230 * 9 8 7 17 17 C 1.55161 * 111.00318 * 236.11890 * 2 1 3 18 18 C 1.54421 * 102.89434 * 206.40613 * 17 2 1 19 19 N 1.47030 * 107.28070 * 22.18557 * 18 17 2 20 20 C 1.36937 * 125.64657 * 181.02102 * 19 18 17 21 21 H 1.07998 * 119.99726 * 173.94393 * 20 19 18 22 22 C 1.38815 * 120.00185 * 353.94845 * 20 19 18 23 23 N 1.31615 * 119.99829 * 6.82839 * 22 20 19 24 24 Si 1.86794 * 119.99703 * 186.82882 * 22 20 19 25 25 H 1.48504 * 109.47520 * 94.98864 * 24 22 20 26 26 H 1.48507 * 109.47018 * 214.98460 * 24 22 20 27 27 H 1.48497 * 109.47673 * 334.98058 * 24 22 20 28 28 C 1.47425 * 108.70128 * 1.06512 * 19 18 17 29 29 H 1.08997 * 109.47182 * 60.70385 * 1 2 3 30 30 H 1.09005 * 109.47317 * 180.69880 * 1 2 3 31 31 H 1.09003 * 109.47583 * 300.69617 * 1 2 3 32 32 H 0.96995 * 120.00267 * 239.30067 * 3 2 1 33 33 H 1.07996 * 119.96226 * 0.02665 * 7 6 4 34 34 H 1.07997 * 120.04487 * 180.02562 * 8 7 6 35 35 H 1.07998 * 120.20380 * 179.97438 * 11 10 9 36 36 H 1.09004 * 109.31378 * 324.20728 * 13 12 10 37 37 H 1.08996 * 109.14986 * 204.80731 * 13 12 10 38 38 H 1.08989 * 108.90938 * 174.35492 * 14 13 12 39 39 H 1.09005 * 108.82527 * 55.78501 * 14 13 12 40 40 H 1.09008 * 109.21105 * 304.48130 * 15 14 13 41 41 H 1.09001 * 109.21739 * 185.16257 * 15 14 13 42 42 H 1.08996 * 110.71839 * 324.75183 * 17 2 1 43 43 H 1.09004 * 110.71472 * 88.02220 * 17 2 1 44 44 H 1.09001 * 109.88057 * 262.76805 * 18 17 2 45 45 H 1.08995 * 109.87922 * 141.60811 * 18 17 2 46 46 H 0.97002 * 119.99627 * 179.97438 * 23 22 20 47 47 H 1.09005 * 110.35922 * 217.03178 * 28 19 18 48 48 H 1.08993 * 110.46148 * 94.75636 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7358 2.2108 1.0037 5 8 1.0164 1.8345 1.9088 6 6 2.2625 3.5897 1.0039 7 6 3.0895 4.0228 -0.0353 8 6 3.5821 5.3106 -0.0353 9 6 3.2550 6.1766 0.9985 10 6 2.4327 5.7516 2.0358 11 6 1.9348 4.4641 2.0447 12 8 2.1162 6.6173 3.0426 13 6 3.1967 6.9846 3.9085 14 6 3.9912 8.1386 3.3175 15 6 4.6906 7.7563 2.0224 16 8 3.7377 7.4515 1.0023 17 6 2.0861 -0.8075 -1.2026 18 6 3.4683 -1.2732 -0.6953 19 7 3.4275 -1.2420 0.7741 20 6 4.4643 -1.5650 1.6083 21 1 4.3665 -1.4167 2.6736 22 6 5.6409 -2.0829 1.0848 23 7 5.8127 -2.1385 -0.2190 24 14 6.9805 -2.7010 2.2306 25 1 6.8347 -4.1670 2.4173 26 1 8.3112 -2.4072 1.6404 27 1 6.8608 -2.0202 3.5449 28 6 2.0852 -0.8062 1.2006 29 1 -0.3633 0.5028 -0.8962 30 1 -0.3634 -1.0276 0.0125 31 1 -0.3634 0.5246 0.8837 32 1 2.6258 1.6690 -0.7223 33 1 3.3432 3.3482 -0.8396 34 1 4.2211 5.6450 -0.8392 35 1 1.2963 4.1340 2.8508 36 1 3.8565 6.1277 4.0452 37 1 2.7936 7.2848 4.8757 38 1 4.7399 8.4595 4.0416 39 1 3.3125 8.9685 3.1205 40 1 5.3192 6.8833 2.1985 41 1 5.3153 8.5867 1.6934 42 1 1.4471 -1.6630 -1.4212 43 1 2.1915 -0.1693 -2.0799 44 1 4.2433 -0.5985 -1.0590 45 1 3.6665 -2.2884 -1.0391 46 1 6.6351 -2.5000 -0.5848 47 1 2.1554 -0.1714 2.0839 48 1 1.4512 -1.6692 1.4038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046375552.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:14 Heat of formation + Delta-G solvation = -49.270120 kcal Electronic energy + Delta-G solvation = -31145.439579 eV Core-core repulsion = 26974.049103 eV Total energy + Delta-G solvation = -4171.390476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.12408 -39.92996 -37.89841 -37.69254 -36.81128 -34.00430 -33.25257 -31.96086 -30.89392 -30.24507 -29.08561 -28.59668 -26.88832 -25.67062 -24.14343 -23.37040 -22.80940 -21.89241 -20.87232 -20.17828 -19.08772 -18.78736 -17.74422 -17.19669 -16.88750 -16.23907 -15.77567 -15.64873 -15.31659 -14.68306 -14.64942 -14.54105 -14.36191 -14.14889 -14.13429 -13.71301 -13.57610 -13.24003 -13.13930 -12.75822 -12.23147 -12.10902 -11.96210 -11.88505 -11.73187 -11.64631 -11.56779 -11.14231 -10.92908 -10.87349 -10.72893 -10.41893 -10.37490 -10.19876 -10.07742 -10.01399 -9.65871 -9.36235 -9.05557 -8.75324 -8.61660 -8.50541 -6.79106 -5.72280 -3.02807 0.56663 1.02559 2.70196 3.14530 3.30980 3.40061 3.46035 3.47275 3.58560 3.82632 4.29790 4.36390 4.50958 4.62807 4.76368 4.79769 4.88662 4.95433 4.99427 5.03714 5.13472 5.17514 5.32637 5.38200 5.40621 5.45865 5.59231 5.61324 5.68691 5.73197 5.89899 6.02694 6.07398 6.09432 6.13809 6.17225 6.26963 6.36483 6.39867 6.54698 6.68626 6.82299 6.84590 7.11843 7.30889 7.51437 7.59052 7.79867 7.86845 8.26128 8.52246 9.23431 9.83687 10.50325 11.40245 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.003138 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.827967 B = 8920.721404 C =10187.610698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.156 3.844 3 N -0.694 5.694 4 C 0.562 3.438 5 O -0.534 6.534 6 C -0.117 4.117 7 C -0.074 4.074 8 C -0.123 4.123 9 C 0.085 3.915 10 C 0.054 3.946 11 C -0.057 4.057 12 O -0.317 6.317 13 C 0.056 3.944 14 C -0.186 4.186 15 C 0.059 3.941 16 O -0.320 6.320 17 C -0.147 4.147 18 C 0.177 3.823 19 N -0.603 5.603 20 C -0.222 4.222 21 H 0.076 0.924 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.132 3.868 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.397 0.603 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.041 0.959 45 H 0.047 0.953 46 H 0.251 0.749 47 H 0.052 0.948 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 18.888 0.288 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.070 3.930 3 N -0.344 5.344 4 C 0.348 3.652 5 O -0.413 6.413 6 C -0.120 4.120 7 C -0.093 4.093 8 C -0.141 4.141 9 C 0.040 3.960 10 C 0.010 3.990 11 C -0.076 4.076 12 O -0.233 6.233 13 C -0.019 4.019 14 C -0.224 4.224 15 C -0.016 4.016 16 O -0.236 6.236 17 C -0.186 4.186 18 C 0.052 3.948 19 N -0.329 5.329 20 C -0.351 4.351 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.570 5.570 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.219 1.219 27 H -0.207 1.207 28 C 0.005 3.995 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.233 0.767 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.525 18.740 0.837 19.555 hybrid contribution 1.483 -0.266 0.333 1.543 sum -4.042 18.474 1.171 18.947 Atomic orbital electron populations 1.22014 0.94174 1.02248 1.02525 1.21524 0.92718 0.80455 0.98308 1.45725 1.51124 1.12314 1.25248 1.17922 0.80684 0.84386 0.82191 1.90731 1.37625 1.77251 1.35684 1.19996 1.00868 0.94787 0.96382 1.21291 0.95035 0.95402 0.97558 1.21011 1.01319 0.92205 0.99575 1.19382 0.96123 0.85164 0.95289 1.18978 0.99722 0.90028 0.90251 1.21162 0.98367 0.89667 0.98416 1.86496 1.34433 1.61705 1.40679 1.22728 0.89260 0.96962 0.92906 1.22463 1.01157 1.00597 0.98168 1.22660 0.89788 1.01638 0.87469 1.86308 1.59345 1.25011 1.52973 1.23254 1.00530 0.98945 0.95834 1.21183 0.89875 0.99989 0.83749 1.44438 1.07548 1.79168 1.01751 1.19066 0.91939 1.34584 0.89479 0.90610 1.24769 0.98129 1.01504 0.95984 1.69957 1.26338 1.51301 1.09421 0.86147 0.81280 0.78934 0.79746 1.21643 1.21856 1.20724 1.21876 0.87578 0.94937 0.95065 0.93109 0.91798 0.90664 0.76742 0.84445 0.84124 0.83399 0.92088 0.87746 0.89092 0.89820 0.92135 0.87731 0.90728 0.91734 0.94051 0.93495 0.93882 0.92950 0.95558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.57 37.16 0.32 -1.99 16 2 C 0.16 2.74 0.82 -129.67 -0.11 2.64 16 3 N -0.69 -11.25 5.13 -46.62 -0.24 -11.49 16 4 C 0.56 9.52 7.14 -12.44 -0.09 9.43 16 5 O -0.53 -10.47 13.15 5.29 0.07 -10.40 16 6 C -0.12 -1.69 5.88 -104.93 -0.62 -2.31 16 7 C -0.07 -0.90 9.53 -39.17 -0.37 -1.27 16 8 C -0.12 -1.39 9.98 -39.51 -0.39 -1.79 16 9 C 0.08 1.06 5.74 -39.09 -0.22 0.84 16 10 C 0.05 0.73 5.71 -39.36 -0.22 0.50 16 11 C -0.06 -0.81 9.54 -39.06 -0.37 -1.18 16 12 O -0.32 -4.03 10.19 -36.80 -0.37 -4.40 16 13 C 0.06 0.50 6.52 36.68 0.24 0.74 16 14 C -0.19 -1.35 5.92 -27.68 -0.16 -1.51 16 15 C 0.06 0.49 6.51 36.68 0.24 0.73 16 16 O -0.32 -3.74 10.15 -36.21 -0.37 -4.11 16 17 C -0.15 -2.55 5.99 -24.84 -0.15 -2.70 16 18 C 0.18 4.10 5.37 -3.01 -0.02 4.08 16 19 N -0.60 -15.30 3.39 -170.01 -0.58 -15.88 16 20 C -0.22 -6.25 10.26 -15.06 -0.15 -6.41 16 21 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 22 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 23 N -0.92 -26.60 10.36 55.49 0.58 -26.03 16 24 Si 0.91 22.21 29.56 -169.99 -5.02 17.18 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 C 0.13 2.89 6.13 -2.53 -0.02 2.88 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 31 H 0.07 1.26 6.22 -51.93 -0.32 0.94 16 32 H 0.40 5.62 6.51 -40.82 -0.27 5.35 16 33 H 0.14 1.40 6.38 -52.49 -0.34 1.07 16 34 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.15 2.14 7.65 -52.49 -0.40 1.74 16 36 H 0.06 0.54 7.93 -51.93 -0.41 0.13 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.43 8.14 -51.94 -0.42 0.00 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.49 7.93 -51.92 -0.41 0.08 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.21 8.04 -51.93 -0.42 0.80 16 43 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 44 H 0.04 1.04 7.55 -51.93 -0.39 0.65 16 45 H 0.05 1.22 7.37 -51.93 -0.38 0.84 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.05 1.24 6.58 -51.93 -0.34 0.90 16 48 H 0.03 0.58 8.03 -51.93 -0.42 0.16 16 LS Contribution 379.66 15.07 5.72 5.72 Total: -1.00 -33.48 379.66 -9.44 -42.93 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.02 Total: 4.13 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.20 Total: 2.36 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.24 Total: -53.40 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.67 Total: -18.91 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.48 -9.44 -42.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046375552.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.345 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds