Wall clock time and date at job start Sat Apr 11 2020 07:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 110.91809 * 2 1 4 4 C 1.34774 * 120.00081 * 303.90144 * 3 2 1 5 5 O 1.21587 * 120.00365 * 359.97438 * 4 3 2 6 6 C 1.47617 * 119.99868 * 179.97438 * 4 3 2 7 7 C 1.39696 * 120.04971 * 359.97438 * 6 4 3 8 8 C 1.37870 * 120.07604 * 179.97438 * 7 6 4 9 9 C 1.38772 * 119.90902 * 0.02562 * 8 7 6 10 10 C 1.39032 * 120.29756 * 0.02562 * 9 8 7 11 11 C 1.38043 * 120.21365 * 359.71857 * 10 9 8 12 12 O 1.36499 * 119.58093 * 180.02562 * 10 9 8 13 13 C 1.42892 * 115.92938 * 291.72710 * 12 10 9 14 14 C 1.52071 * 110.77483 * 84.41713 * 13 12 10 15 15 C 1.52057 * 112.36235 * 295.17956 * 14 13 12 16 16 O 1.36318 * 120.14413 * 180.02562 * 9 8 7 17 17 C 1.55157 * 111.00230 * 123.90532 * 2 1 3 18 18 C 1.54321 * 103.10033 * 153.66249 * 17 2 1 19 19 N 1.47019 * 107.27531 * 337.71659 * 18 17 2 20 20 C 1.36934 * 125.65046 * 178.97751 * 19 18 17 21 21 H 1.08001 * 119.99839 * 179.97438 * 20 19 18 22 22 C 1.38816 * 120.00199 * 359.97423 * 20 19 18 23 23 N 1.31622 * 119.99707 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00112 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46954 * 89.99962 * 24 22 20 26 26 H 1.48501 * 109.47166 * 209.99792 * 24 22 20 27 27 H 1.48495 * 109.47323 * 330.00243 * 24 22 20 28 28 C 1.47431 * 108.70142 * 358.94050 * 19 18 17 29 29 H 1.08998 * 109.47366 * 296.10172 * 1 2 3 30 30 H 1.09006 * 109.46883 * 56.09371 * 1 2 3 31 31 H 1.08999 * 109.47315 * 176.09315 * 1 2 3 32 32 H 0.97003 * 120.00141 * 123.90560 * 3 2 1 33 33 H 1.08000 * 119.96310 * 359.95624 * 7 6 4 34 34 H 1.07997 * 120.04476 * 179.97438 * 8 7 6 35 35 H 1.07995 * 120.20039 * 180.26351 * 11 10 9 36 36 H 1.08999 * 109.21852 * 324.08355 * 13 12 10 37 37 H 1.09003 * 109.18275 * 204.72645 * 13 12 10 38 38 H 1.08999 * 108.90179 * 174.43652 * 14 13 12 39 39 H 1.08995 * 108.89993 * 55.92571 * 14 13 12 40 40 H 1.09003 * 109.21704 * 304.48553 * 15 14 13 41 41 H 1.09003 * 109.17897 * 185.14077 * 15 14 13 42 42 H 1.09002 * 110.72219 * 35.20946 * 17 2 1 43 43 H 1.09003 * 110.71618 * 272.11558 * 17 2 1 44 44 H 1.09001 * 109.88480 * 97.13771 * 18 17 2 45 45 H 1.09004 * 109.87910 * 218.29695 * 18 17 2 46 46 H 0.96993 * 119.99930 * 179.97438 * 23 22 20 47 47 H 1.08999 * 110.36190 * 142.96411 * 28 19 18 48 48 H 1.08998 * 110.36491 * 265.18090 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3684 0.0000 4 6 1.6855 2.2303 -0.9687 5 8 0.9202 1.8721 -1.8430 6 6 2.2122 3.6093 -0.9684 7 6 3.0911 4.0222 0.0359 8 6 3.5837 5.3099 0.0364 9 6 3.2048 6.1961 -0.9620 10 6 2.3296 5.7918 -1.9637 11 6 1.8352 4.5029 -1.9757 12 8 1.9671 6.6754 -2.9389 13 6 1.1483 7.7685 -2.5187 14 6 2.0011 8.9000 -1.9664 15 6 2.7391 8.5022 -0.6979 16 8 3.6894 7.4703 -0.9664 17 6 2.0861 -0.8080 1.2022 18 6 3.4690 -1.2743 0.7005 19 7 3.4326 -1.2462 -0.7689 20 6 4.4719 -1.5708 -1.5994 21 1 4.3440 -1.5181 -2.6705 22 6 5.6899 -1.9675 -1.0645 23 7 5.8460 -2.0312 0.2409 24 14 7.1079 -2.4096 -2.1973 25 1 7.9112 -1.1936 -2.4825 26 1 7.9669 -3.4277 -1.5410 27 1 6.5728 -2.9588 -3.4690 28 6 2.0916 -0.8114 -1.2004 29 1 -0.3634 0.4521 0.9228 30 1 -0.3633 0.5733 -0.8530 31 1 -0.3634 -1.0252 -0.0700 32 1 2.6639 1.6541 0.6972 33 1 3.3848 3.3320 0.8129 34 1 4.2628 5.6287 0.8133 35 1 1.1587 4.1878 -2.7563 36 1 0.4619 7.4257 -1.7445 37 1 0.5746 8.1343 -3.3703 38 1 1.3581 9.7526 -1.7483 39 1 2.7299 9.1938 -2.7217 40 1 2.0196 8.1441 0.0385 41 1 3.2585 9.3729 -0.2978 42 1 1.4467 -1.6632 1.4209 43 1 2.1892 -0.1707 2.0805 44 1 4.2428 -0.5987 1.0652 45 1 3.6663 -2.2888 1.0472 46 1 6.6969 -2.3087 0.6146 47 1 2.1643 -0.1785 -2.0847 48 1 1.4599 -1.6760 -1.4043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046375555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:17 Heat of formation + Delta-G solvation = -48.192842 kcal Electronic energy + Delta-G solvation = -31079.220215 eV Core-core repulsion = 26907.876453 eV Total energy + Delta-G solvation = -4171.343762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15134 -39.93102 -37.89683 -37.73660 -36.82495 -33.99106 -33.27740 -31.95227 -30.90581 -30.23833 -29.08750 -28.58709 -26.92329 -25.65288 -24.14374 -23.37594 -22.82574 -21.92469 -20.86816 -20.16022 -19.09755 -18.81527 -17.75929 -17.21613 -16.88082 -16.26065 -15.77979 -15.68403 -15.30129 -14.71630 -14.62825 -14.55028 -14.39450 -14.14907 -14.11840 -13.72456 -13.60298 -13.23745 -13.15444 -12.75921 -12.24316 -12.11702 -11.92486 -11.88856 -11.74889 -11.64754 -11.60229 -11.16811 -10.88565 -10.84449 -10.75001 -10.39831 -10.35520 -10.21690 -10.06544 -10.00029 -9.64125 -9.34479 -9.06236 -8.75990 -8.62473 -8.49131 -6.78070 -5.68697 -3.00414 0.56069 1.02265 2.69376 3.12433 3.35113 3.43362 3.48658 3.49426 3.50431 3.81863 4.25693 4.33116 4.53596 4.62371 4.72091 4.78010 4.86764 4.92388 4.93081 5.03037 5.11860 5.17233 5.30378 5.35581 5.39598 5.48817 5.57260 5.62688 5.67326 5.73267 5.89684 6.03361 6.06881 6.09258 6.14288 6.16819 6.26898 6.36945 6.40658 6.54782 6.69578 6.81582 6.84353 7.11527 7.30658 7.56044 7.57094 7.81664 7.87257 8.28174 8.51606 9.26002 9.85876 10.51586 11.43409 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.012891 B = 0.002929 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.465797 B = 9556.885630 C =10585.226471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.156 3.844 3 N -0.693 5.693 4 C 0.561 3.439 5 O -0.535 6.535 6 C -0.117 4.117 7 C -0.074 4.074 8 C -0.123 4.123 9 C 0.085 3.915 10 C 0.055 3.945 11 C -0.057 4.057 12 O -0.315 6.315 13 C 0.058 3.942 14 C -0.188 4.188 15 C 0.060 3.940 16 O -0.319 6.319 17 C -0.147 4.147 18 C 0.177 3.823 19 N -0.603 5.603 20 C -0.221 4.221 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.925 5.925 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.133 3.867 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.398 0.602 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.044 0.956 46 H 0.251 0.749 47 H 0.050 0.950 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.059 20.911 3.683 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.070 3.930 3 N -0.343 5.343 4 C 0.348 3.652 5 O -0.414 6.414 6 C -0.121 4.121 7 C -0.093 4.093 8 C -0.141 4.141 9 C 0.041 3.959 10 C 0.011 3.989 11 C -0.076 4.076 12 O -0.232 6.232 13 C -0.017 4.017 14 C -0.226 4.226 15 C -0.015 4.015 16 O -0.235 6.235 17 C -0.186 4.186 18 C 0.052 3.948 19 N -0.329 5.329 20 C -0.349 4.349 21 H 0.094 0.906 22 C -0.205 4.205 23 N -0.573 5.573 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.006 3.994 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.233 0.767 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.149 20.601 2.861 23.598 hybrid contribution 1.080 0.027 -0.021 1.080 sum -10.070 20.628 2.839 23.129 Atomic orbital electron populations 1.22033 0.94085 1.02479 1.02521 1.21601 0.92754 0.80420 0.98248 1.45721 1.48202 1.11850 1.28552 1.17926 0.81104 0.84376 0.81790 1.90720 1.35905 1.78232 1.36513 1.19998 1.00483 0.94688 0.96894 1.21299 0.94745 0.95462 0.97758 1.21013 1.01755 0.93499 0.97833 1.19386 0.96120 0.86127 0.94308 1.18977 0.98131 0.90831 0.90994 1.21153 0.97715 0.91142 0.97604 1.86419 1.68872 1.36236 1.31663 1.22647 0.91758 0.86157 1.01116 1.22483 1.00986 0.99643 0.99444 1.22631 0.92281 0.90476 0.96062 1.86317 1.34890 1.11923 1.90372 1.23239 1.00545 0.98950 0.95850 1.21160 0.89896 0.99966 0.83748 1.44434 1.07767 1.78915 1.01788 1.19064 0.89305 1.37515 0.89044 0.90587 1.24754 0.97727 1.02029 0.96012 1.69942 1.24173 1.54160 1.09042 0.86133 0.82386 0.77786 0.79596 1.21670 1.21737 1.20724 1.21959 0.87630 0.94855 0.94943 0.93202 0.90275 0.91832 0.76670 0.84405 0.84100 0.83380 0.92356 0.87773 0.89170 0.89735 0.92336 0.87768 0.90785 0.91782 0.93656 0.93777 0.93892 0.93199 0.95557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.60 37.16 0.32 -2.01 16 2 C 0.16 2.75 0.83 -129.41 -0.11 2.64 16 3 N -0.69 -11.29 5.13 -46.39 -0.24 -11.52 16 4 C 0.56 9.48 7.14 -12.43 -0.09 9.39 16 5 O -0.54 -10.39 13.19 5.29 0.07 -10.32 16 6 C -0.12 -1.70 5.88 -104.93 -0.62 -2.31 16 7 C -0.07 -0.90 9.53 -39.17 -0.37 -1.27 16 8 C -0.12 -1.40 9.98 -39.52 -0.39 -1.79 16 9 C 0.09 1.07 5.74 -39.09 -0.22 0.84 16 10 C 0.05 0.73 5.72 -39.36 -0.23 0.50 16 11 C -0.06 -0.80 9.54 -39.06 -0.37 -1.18 16 12 O -0.32 -4.00 10.16 -36.78 -0.37 -4.37 16 13 C 0.06 0.48 6.51 36.68 0.24 0.72 16 14 C -0.19 -1.26 5.93 -27.68 -0.16 -1.42 16 15 C 0.06 0.46 6.51 36.68 0.24 0.70 16 16 O -0.32 -3.74 10.14 -36.19 -0.37 -4.10 16 17 C -0.15 -2.56 5.95 -24.90 -0.15 -2.71 16 18 C 0.18 4.13 5.36 -3.07 -0.02 4.11 16 19 N -0.60 -15.42 3.40 -169.76 -0.58 -16.00 16 20 C -0.22 -6.28 10.28 -15.06 -0.15 -6.43 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 23 N -0.92 -26.92 10.31 55.49 0.57 -26.35 16 24 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 C 0.13 2.92 6.19 -2.26 -0.01 2.91 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.32 5.92 -51.93 -0.31 1.01 16 31 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.40 5.72 6.53 -40.82 -0.27 5.45 16 33 H 0.14 1.43 6.38 -52.49 -0.34 1.10 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.15 2.13 7.65 -52.49 -0.40 1.73 16 36 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.40 7.93 -51.93 -0.41 -0.02 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 43 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 44 H 0.05 1.15 7.38 -51.93 -0.38 0.76 16 45 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.05 1.19 6.90 -51.93 -0.36 0.83 16 48 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -33.96 379.65 -9.44 -43.40 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.02 Total: 3.68 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.20 Total: 2.32 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.24 Total: -53.87 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.67 Total: -18.80 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.96 -9.44 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046375555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.796 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds