Wall clock time and date at job start Sat Apr 11 2020 07:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30869 * 126.20040 * 2 1 4 4 C 1.34576 * 107.28180 * 180.18498 * 3 2 1 5 5 C 1.47837 * 126.01514 * 179.83253 * 4 3 2 6 6 O 1.21563 * 119.99722 * 179.68876 * 5 4 3 7 7 N 1.34777 * 120.00348 * 359.69168 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27789 * 7 5 4 9 9 C 1.53002 * 110.64009 * 298.03298 * 8 7 5 10 10 C 1.55163 * 110.71950 * 174.69677 * 8 7 5 11 11 C 1.54902 * 101.58084 * 277.13983 * 10 8 7 12 12 N 1.47431 * 104.83256 * 322.98525 * 11 10 8 13 13 C 1.36938 * 125.64690 * 204.09499 * 12 11 10 14 14 H 1.08003 * 119.99327 * 180.02562 * 13 12 11 15 15 C 1.38801 * 120.00396 * 0.04469 * 13 12 11 16 16 N 1.31621 * 120.00080 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00259 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46938 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47126 * 119.99885 * 17 15 13 20 20 H 1.48501 * 109.47349 * 240.00256 * 17 15 13 21 21 C 1.47022 * 108.69949 * 24.13420 * 12 11 10 22 22 N 1.31553 * 107.95784 * 359.56618 * 4 3 2 23 23 N 1.28853 * 108.70760 * 0.26601 * 22 4 3 24 24 C 1.40107 * 125.76956 * 180.02562 * 23 22 4 25 25 N 1.33627 * 125.59282 * 179.66842 * 24 23 22 26 26 C 1.30807 * 109.78716 * 179.85714 * 25 24 23 27 27 N 1.34437 * 108.19584 * 0.40766 * 26 25 24 28 28 H 0.97001 * 126.77162 * 179.77380 * 27 26 25 29 29 N 1.31145 * 125.59510 * 359.97438 * 24 23 22 30 30 H 1.08997 * 109.47716 * 270.28370 * 1 2 3 31 31 H 1.09005 * 109.47501 * 30.28725 * 1 2 3 32 32 H 1.09006 * 109.47166 * 150.27968 * 1 2 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.47025 * 59.30017 * 9 8 7 35 35 H 1.09000 * 109.47080 * 179.30561 * 9 8 7 36 36 H 1.09003 * 109.47001 * 299.30069 * 9 8 7 37 37 H 1.08999 * 110.99880 * 35.21280 * 10 8 7 38 38 H 1.09000 * 110.99961 * 159.06130 * 10 8 7 39 39 H 1.09003 * 110.36598 * 204.15399 * 11 10 8 40 40 H 1.08991 * 110.37105 * 81.82648 * 11 10 8 41 41 H 0.97001 * 119.99944 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.88158 * 239.51445 * 21 12 11 43 43 H 1.08997 * 110.01069 * 118.42874 * 21 12 11 44 44 H 1.08002 * 125.90409 * 180.11651 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2799 1.0561 0.0000 4 6 3.5530 0.6197 -0.0041 5 6 4.7630 1.4691 -0.0092 6 8 5.8653 0.9566 -0.0069 7 7 4.6440 2.8116 -0.0162 8 6 5.8432 3.6531 -0.0273 9 6 6.6779 3.4193 1.2335 10 6 5.4616 5.1505 -0.1680 11 6 5.2746 5.2812 -1.7001 12 7 6.3158 4.4151 -2.2826 13 6 6.8513 4.5436 -3.5364 14 1 7.6127 3.8548 -3.8715 15 6 6.4158 5.5592 -4.3764 16 7 5.4885 6.3991 -3.9676 17 14 7.1468 5.7349 -6.0864 18 1 8.1636 4.6742 -6.3014 19 1 6.0707 5.6013 -7.1009 20 1 7.7869 7.0686 -6.2165 21 6 6.6832 3.3900 -1.2948 22 7 3.5309 -0.6956 0.0029 23 7 2.3037 -1.0884 0.0055 24 6 1.8703 -2.4207 0.0133 25 7 0.5964 -2.8241 0.0222 26 6 0.5458 -4.1312 0.0247 27 7 1.8058 -4.6000 0.0263 28 1 2.0790 -5.5308 0.0312 29 7 2.6482 -3.4765 0.0187 30 1 -0.3634 0.0051 1.0276 31 1 -0.3634 0.8874 -0.5183 32 1 -0.3634 -0.8925 -0.5095 33 1 3.7644 3.2205 -0.0183 34 1 6.9708 2.3707 1.2859 35 1 7.5700 4.0447 1.1997 36 1 6.0873 3.6760 2.1129 37 1 4.5327 5.3681 0.3590 38 1 6.2683 5.7938 0.1835 39 1 5.4220 6.3147 -2.0135 40 1 4.2841 4.9328 -1.9925 41 1 5.1845 7.1091 -4.5545 42 1 7.7446 3.4663 -1.0587 43 1 6.4614 2.3975 -1.6871 44 1 -0.3528 -4.7302 0.0297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046521940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:20 Heat of formation + Delta-G solvation = 202.882817 kcal Electronic energy + Delta-G solvation = -30188.504134 eV Core-core repulsion = 25989.092989 eV Total energy + Delta-G solvation = -4199.411146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.93249 -42.77393 -39.73395 -37.19934 -35.16017 -34.01572 -33.65129 -32.54499 -31.92692 -31.28326 -29.90000 -28.60650 -28.30987 -25.82387 -25.49323 -23.72478 -23.46158 -22.82842 -21.11154 -20.46599 -20.11460 -19.30820 -18.84790 -17.95547 -17.43459 -17.20398 -16.56580 -15.86917 -15.57702 -15.54559 -14.67595 -14.52103 -14.49058 -13.91264 -13.62368 -13.31837 -13.21226 -13.07357 -12.69038 -12.66187 -12.20018 -12.18647 -12.02635 -11.67097 -11.66082 -11.47326 -10.90318 -10.85777 -10.82819 -10.80992 -10.67447 -10.38504 -10.27031 -10.21188 -9.99094 -9.96976 -9.62923 -9.46353 -9.38443 -8.59748 -8.55547 -6.71672 -5.56447 -2.96453 0.46423 1.07959 1.22417 1.89312 2.12431 2.39132 3.11751 3.46266 3.46728 3.51892 3.53629 3.54801 3.76328 4.07404 4.31243 4.57168 4.72614 4.93965 5.19763 5.22413 5.28804 5.37470 5.46144 5.57970 5.62366 5.64685 5.81028 5.83188 6.01601 6.11321 6.21946 6.24465 6.30850 6.36797 6.43036 6.53620 6.59551 6.77818 6.91281 7.05606 7.19064 7.57277 7.69132 7.73431 7.90999 7.98709 8.43240 8.48463 9.32169 9.92719 10.57873 11.47963 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.014367 B = 0.002577 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.429372 B =10863.454560 C =11452.193880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.258 3.742 3 N -0.471 5.471 4 C 0.174 3.826 5 C 0.615 3.385 6 O -0.510 6.510 7 N -0.683 5.683 8 C 0.160 3.840 9 C -0.151 4.151 10 C -0.145 4.145 11 C 0.152 3.848 12 N -0.604 5.604 13 C -0.214 4.214 14 H 0.077 0.923 15 C -0.014 4.014 16 N -0.924 5.924 17 Si 0.913 3.087 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.291 1.291 21 C 0.134 3.866 22 N -0.239 5.239 23 N -0.235 5.235 24 C 0.455 3.545 25 N -0.536 5.536 26 C 0.294 3.706 27 N -0.468 5.468 28 H 0.453 0.547 29 N -0.269 5.269 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.408 0.592 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.012 0.988 41 H 0.250 0.750 42 H 0.033 0.967 43 H 0.035 0.965 44 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.929 -20.167 13.092 28.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.018 4.018 3 N -0.196 5.196 4 C -0.107 4.107 5 C 0.396 3.604 6 O -0.382 6.382 7 N -0.335 5.335 8 C 0.074 3.926 9 C -0.209 4.209 10 C -0.184 4.184 11 C 0.027 3.973 12 N -0.330 5.330 13 C -0.343 4.343 14 H 0.095 0.905 15 C -0.209 4.209 16 N -0.574 5.574 17 Si 0.744 3.256 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.218 1.218 21 C 0.008 3.992 22 N -0.073 5.073 23 N -0.028 5.028 24 C 0.086 3.914 25 N -0.268 5.268 26 C -0.006 4.006 27 N -0.188 5.188 28 H 0.301 0.699 29 N -0.103 5.103 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.244 0.756 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.030 0.970 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -14.082 -20.103 12.910 27.732 hybrid contribution -0.413 -0.769 -0.994 1.322 sum -14.494 -20.872 11.917 28.066 Atomic orbital electron populations 1.20553 0.81999 1.05861 1.04907 1.25337 0.97963 0.80226 0.98271 1.71471 1.00421 1.26845 1.20910 1.24194 0.93317 0.88409 1.04822 1.16124 0.84680 0.81874 0.77759 1.90814 1.24882 1.73546 1.48951 1.45690 1.10771 1.04132 1.72858 1.21455 0.84467 0.90724 0.95907 1.22054 0.99578 1.03427 0.95868 1.23359 1.00956 0.92373 1.01685 1.21957 0.90531 0.99549 0.85274 1.44516 1.44517 1.31344 1.12644 1.19144 1.16027 1.10531 0.88555 0.90509 1.24753 0.99188 0.98298 0.98682 1.69790 1.32653 1.19586 1.35334 0.86000 0.78132 0.77392 0.84043 1.20582 1.21900 1.21798 1.21629 0.95849 0.93499 0.88236 1.74659 0.98967 1.14076 1.19640 1.43078 1.04592 1.02603 1.52555 1.19334 0.87641 0.83311 1.01133 1.70196 1.18320 1.11253 1.27046 1.26199 0.90735 0.89706 0.93910 1.48065 1.04835 1.09698 1.56251 0.69895 1.78555 1.13861 0.91737 1.26099 0.88944 0.88343 0.87785 0.75620 0.91034 0.91417 0.92908 0.91629 0.90280 0.87352 0.96980 0.93917 0.94887 0.94731 0.74340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 9.84 36.00 0.35 -0.27 16 2 C 0.26 3.49 7.94 -155.25 -1.23 2.26 16 3 N -0.47 -7.56 11.09 -8.47 -0.09 -7.65 16 4 C 0.17 3.21 7.96 -156.30 -1.24 1.96 16 5 C 0.62 12.18 7.05 -12.33 -0.09 12.09 16 6 O -0.51 -11.32 14.00 5.31 0.07 -11.24 16 7 N -0.68 -12.57 5.14 -46.84 -0.24 -12.81 16 8 C 0.16 3.07 0.81 -129.98 -0.11 2.97 16 9 C -0.15 -2.51 8.46 37.16 0.31 -2.20 16 10 C -0.14 -2.75 6.09 -24.58 -0.15 -2.90 16 11 C 0.15 3.74 5.87 -2.53 -0.01 3.73 16 12 N -0.60 -16.31 3.39 -170.08 -0.58 -16.89 16 13 C -0.21 -6.28 10.27 -15.06 -0.15 -6.44 16 14 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 15 C -0.01 -0.42 5.49 -17.43 -0.10 -0.51 16 16 N -0.92 -27.50 10.09 55.49 0.56 -26.94 16 17 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 C 0.13 3.17 6.13 -3.07 -0.02 3.15 16 22 N -0.24 -4.37 12.02 32.08 0.39 -3.99 16 23 N -0.24 -3.53 3.52 -10.92 -0.04 -3.57 16 24 C 0.46 5.55 8.73 -320.53 -2.80 2.75 16 25 N -0.54 -4.31 8.79 -14.86 -0.13 -4.44 16 26 C 0.29 0.94 13.12 -90.67 -1.19 -0.25 16 27 N -0.47 -2.21 7.44 29.53 0.22 -1.99 16 28 H 0.45 0.24 8.96 -182.34 -1.63 -1.39 16 29 N -0.27 -3.10 12.81 30.08 0.39 -2.72 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.78 6.30 -51.93 -0.33 0.46 16 33 H 0.41 6.90 8.18 -40.82 -0.33 6.56 16 34 H 0.07 1.29 6.39 -51.93 -0.33 0.95 16 35 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 38 H 0.08 1.45 8.05 -51.93 -0.42 1.03 16 39 H 0.11 2.97 5.87 -51.93 -0.30 2.67 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.03 0.78 7.80 -51.93 -0.41 0.37 16 43 H 0.03 0.89 6.45 -51.93 -0.34 0.56 16 44 H 0.24 -0.73 8.06 -52.49 -0.42 -1.16 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -40.07 367.84 -11.95 -52.02 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.59 Total: 0.38 kcal Atomic # 6 Polarization: 22.77 SS G_CDS: -6.42 Total: 16.35 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: 0.47 Total: -80.99 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -40.07 -11.95 -52.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046521940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.899 kcal (2) G-P(sol) polarization free energy of solvation -40.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 214.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 202.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds