Wall clock time and date at job start Sat Apr 11 2020 07:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30869 * 126.20040 * 2 1 4 4 C 1.34576 * 107.28180 * 180.18498 * 3 2 1 5 5 C 1.47837 * 126.01514 * 179.83253 * 4 3 2 6 6 O 1.21563 * 119.99722 * 179.68876 * 5 4 3 7 7 N 1.34777 * 120.00348 * 359.69168 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27789 * 7 5 4 9 9 C 1.53002 * 110.64009 * 298.03298 * 8 7 5 10 10 C 1.55163 * 110.71950 * 174.69677 * 8 7 5 11 11 C 1.54902 * 101.58084 * 277.13983 * 10 8 7 12 12 N 1.47431 * 104.83256 * 322.98525 * 11 10 8 13 13 C 1.36938 * 125.64690 * 204.09499 * 12 11 10 14 14 H 1.08003 * 119.99327 * 180.02562 * 13 12 11 15 15 C 1.38801 * 120.00396 * 0.04469 * 13 12 11 16 16 N 1.31621 * 120.00080 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00259 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46938 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47126 * 119.99885 * 17 15 13 20 20 H 1.48501 * 109.47349 * 240.00256 * 17 15 13 21 21 C 1.47022 * 108.69949 * 24.13420 * 12 11 10 22 22 N 1.31553 * 107.95784 * 359.56618 * 4 3 2 23 23 N 1.28853 * 108.70760 * 0.26601 * 22 4 3 24 24 C 1.40107 * 125.76956 * 180.02562 * 23 22 4 25 25 N 1.33627 * 125.59282 * 179.66842 * 24 23 22 26 26 C 1.30807 * 109.78716 * 179.85714 * 25 24 23 27 27 N 1.34437 * 108.19584 * 0.40766 * 26 25 24 28 28 H 0.97001 * 126.77162 * 179.77380 * 27 26 25 29 29 N 1.31145 * 125.59510 * 359.97438 * 24 23 22 30 30 H 1.08997 * 109.47716 * 270.28370 * 1 2 3 31 31 H 1.09005 * 109.47501 * 30.28725 * 1 2 3 32 32 H 1.09006 * 109.47166 * 150.27968 * 1 2 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.47025 * 59.30017 * 9 8 7 35 35 H 1.09000 * 109.47080 * 179.30561 * 9 8 7 36 36 H 1.09003 * 109.47001 * 299.30069 * 9 8 7 37 37 H 1.08999 * 110.99880 * 35.21280 * 10 8 7 38 38 H 1.09000 * 110.99961 * 159.06130 * 10 8 7 39 39 H 1.09003 * 110.36598 * 204.15399 * 11 10 8 40 40 H 1.08991 * 110.37105 * 81.82648 * 11 10 8 41 41 H 0.97001 * 119.99944 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.88158 * 239.51445 * 21 12 11 43 43 H 1.08997 * 110.01069 * 118.42874 * 21 12 11 44 44 H 1.08002 * 125.90409 * 180.11651 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2799 1.0561 0.0000 4 6 3.5530 0.6197 -0.0041 5 6 4.7630 1.4691 -0.0092 6 8 5.8653 0.9566 -0.0069 7 7 4.6440 2.8116 -0.0162 8 6 5.8432 3.6531 -0.0273 9 6 6.6779 3.4193 1.2335 10 6 5.4616 5.1505 -0.1680 11 6 5.2746 5.2812 -1.7001 12 7 6.3158 4.4151 -2.2826 13 6 6.8513 4.5436 -3.5364 14 1 7.6127 3.8548 -3.8715 15 6 6.4158 5.5592 -4.3764 16 7 5.4885 6.3991 -3.9676 17 14 7.1468 5.7349 -6.0864 18 1 8.1636 4.6742 -6.3014 19 1 6.0707 5.6013 -7.1009 20 1 7.7869 7.0686 -6.2165 21 6 6.6832 3.3900 -1.2948 22 7 3.5309 -0.6956 0.0029 23 7 2.3037 -1.0884 0.0055 24 6 1.8703 -2.4207 0.0133 25 7 0.5964 -2.8241 0.0222 26 6 0.5458 -4.1312 0.0247 27 7 1.8058 -4.6000 0.0263 28 1 2.0790 -5.5308 0.0312 29 7 2.6482 -3.4765 0.0187 30 1 -0.3634 0.0051 1.0276 31 1 -0.3634 0.8874 -0.5183 32 1 -0.3634 -0.8925 -0.5095 33 1 3.7644 3.2205 -0.0183 34 1 6.9708 2.3707 1.2859 35 1 7.5700 4.0447 1.1997 36 1 6.0873 3.6760 2.1129 37 1 4.5327 5.3681 0.3590 38 1 6.2683 5.7938 0.1835 39 1 5.4220 6.3147 -2.0135 40 1 4.2841 4.9328 -1.9925 41 1 5.1845 7.1091 -4.5545 42 1 7.7446 3.4663 -1.0587 43 1 6.4614 2.3975 -1.6871 44 1 -0.3528 -4.7302 0.0297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046521940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:20 Heat of formation + Delta-G solvation = 175.432843 kcal Electronic energy + Delta-G solvation = -30189.694455 eV Core-core repulsion = 25989.092989 eV Total energy + Delta-G solvation = -4200.601466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.02609 -43.38807 -41.32358 -38.93378 -36.16192 -35.80898 -34.61697 -33.75686 -33.19620 -32.22665 -31.59303 -30.38083 -29.21541 -27.56959 -26.93064 -25.35051 -24.23863 -23.82449 -22.42338 -22.06478 -21.41222 -20.55311 -19.84824 -19.19501 -18.71168 -18.45349 -18.04817 -17.23299 -16.72120 -16.65883 -16.11039 -15.95801 -15.82244 -15.55840 -15.11217 -14.83220 -14.31824 -14.06445 -13.99257 -13.93098 -13.62770 -13.45009 -13.31630 -13.19226 -13.03408 -12.86120 -12.78950 -12.64246 -12.10872 -12.06365 -11.97281 -11.88866 -11.72772 -11.67165 -11.49209 -11.42220 -11.19944 -11.08285 -10.75331 -10.48568 -10.15261 -8.88563 -7.78265 -5.22065 -0.46762 0.23362 0.45156 0.82506 1.44425 1.45580 1.56059 1.56660 1.64483 1.89931 2.08750 2.48140 2.69335 2.80416 3.24851 3.31495 3.57931 3.64504 3.70033 3.80025 3.99400 4.15264 4.37475 4.57281 4.61636 4.63770 4.66795 4.68339 4.71584 4.74449 4.83866 4.91226 4.95858 5.01514 5.07683 5.08559 5.31559 5.42688 5.47053 5.53958 5.64584 5.80303 5.99732 6.25504 6.31497 6.48167 6.79748 6.98442 7.11925 7.76613 8.40711 9.23425 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.014367 B = 0.002577 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.429372 B =10863.454560 C =11452.193880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.264 3.736 3 N -0.486 5.486 4 C 0.153 3.847 5 C 0.614 3.386 6 O -0.543 6.543 7 N -0.675 5.675 8 C 0.169 3.831 9 C -0.142 4.142 10 C -0.124 4.124 11 C 0.154 3.846 12 N -0.623 5.623 13 C -0.242 4.242 14 H 0.069 0.931 15 C -0.062 4.062 16 N -0.943 5.943 17 Si 0.979 3.021 18 H -0.274 1.274 19 H -0.291 1.291 20 H -0.284 1.284 21 C 0.133 3.867 22 N -0.270 5.270 23 N -0.237 5.237 24 C 0.426 3.574 25 N -0.551 5.551 26 C 0.323 3.677 27 N -0.451 5.451 28 H 0.471 0.529 29 N -0.320 5.320 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.416 0.584 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.081 0.919 40 H -0.011 1.011 41 H 0.249 0.751 42 H 0.031 0.969 43 H 0.005 0.995 44 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.387 -21.433 14.105 31.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.011 4.011 3 N -0.213 5.213 4 C -0.129 4.129 5 C 0.396 3.604 6 O -0.418 6.418 7 N -0.327 5.327 8 C 0.083 3.917 9 C -0.200 4.200 10 C -0.163 4.163 11 C 0.030 3.970 12 N -0.349 5.349 13 C -0.371 4.371 14 H 0.087 0.913 15 C -0.255 4.255 16 N -0.593 5.593 17 Si 0.808 3.192 18 H -0.199 1.199 19 H -0.218 1.218 20 H -0.210 1.210 21 C 0.007 3.993 22 N -0.107 5.107 23 N -0.030 5.030 24 C 0.057 3.943 25 N -0.284 5.284 26 C 0.026 3.974 27 N -0.173 5.173 28 H 0.323 0.677 29 N -0.155 5.155 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.253 0.747 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.007 0.993 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.023 0.977 44 H 0.321 0.679 Dipole moment (debyes) X Y Z Total from point charges -16.571 -21.416 13.945 30.458 hybrid contribution 0.216 -0.606 -1.345 1.491 sum -16.356 -22.022 12.601 30.187 Atomic orbital electron populations 1.20822 0.78242 1.06963 1.06667 1.26259 0.99559 0.79240 0.96032 1.71423 0.99585 1.28155 1.22157 1.23858 0.93716 0.88546 1.06733 1.16338 0.84863 0.82240 0.76987 1.90779 1.26317 1.74204 1.50511 1.45610 1.10944 1.03794 1.72335 1.21376 0.84492 0.90909 0.94946 1.21987 0.99995 1.02728 0.95274 1.23227 1.03397 0.92179 0.97471 1.21785 0.88799 0.97317 0.89137 1.44797 1.44852 1.32553 1.12702 1.19402 1.16548 1.10904 0.90228 0.91315 1.25566 0.99683 0.97933 1.02282 1.70016 1.33266 1.19671 1.36305 0.84998 0.77392 0.77536 0.79304 1.19922 1.21772 1.21005 1.21701 0.96695 0.91276 0.89632 1.74520 1.01430 1.14212 1.20500 1.43180 1.03679 1.04366 1.51729 1.19502 0.89298 0.82281 1.03177 1.70206 1.16299 1.13572 1.28279 1.27509 0.91563 0.88522 0.89761 1.47960 1.04754 1.09249 1.55377 0.67712 1.78384 1.16751 0.93386 1.27020 0.86603 0.87167 0.86551 0.74684 0.92643 0.90191 0.89968 0.87922 0.88777 0.90107 0.99306 0.94106 0.95060 0.97724 0.67859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 9.84 71.24 0.70 -0.30 16 2 C 0.26 7.07 7.94 138.07 1.10 8.17 16 3 N -0.49 -15.86 11.09 -180.72 -2.00 -17.87 16 4 C 0.15 5.86 7.96 137.09 1.09 6.95 16 5 C 0.61 25.35 7.05 86.78 0.61 25.96 16 6 O -0.54 -25.45 14.00 -3.91 -0.05 -25.50 16 7 N -0.68 -25.21 5.14 -420.38 -2.16 -27.37 16 8 C 0.17 6.45 0.81 4.79 0.00 6.46 16 9 C -0.14 -4.55 8.46 71.98 0.61 -3.94 16 10 C -0.12 -4.56 6.09 31.99 0.19 -4.36 16 11 C 0.15 7.76 5.87 86.85 0.51 8.27 16 12 N -0.62 -34.76 3.39 -692.01 -2.35 -37.11 16 13 C -0.24 -14.66 10.27 84.03 0.86 -13.79 16 14 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 15 C -0.06 -3.67 5.49 84.86 0.47 -3.20 16 16 N -0.94 -57.23 10.09 21.65 0.22 -57.01 16 17 Si 0.98 47.94 29.55 68.60 2.03 49.97 16 18 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 19 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 20 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 21 C 0.13 6.51 6.13 86.73 0.53 7.05 16 22 N -0.27 -10.36 12.02 -52.42 -0.63 -10.99 16 23 N -0.24 -7.24 3.52 -188.46 -0.66 -7.90 16 24 C 0.43 10.18 8.73 260.69 2.28 12.45 16 25 N -0.55 -7.47 8.79 -200.94 -1.77 -9.24 16 26 C 0.32 0.80 13.12 180.36 2.37 3.16 16 27 N -0.45 -3.17 7.44 -60.50 -0.45 -3.62 16 28 H 0.47 -0.73 8.96 -213.10 -1.91 -2.64 16 29 N -0.32 -7.30 12.81 -58.74 -0.75 -8.05 16 30 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.12 1.46 6.30 -2.38 -0.02 1.44 16 33 H 0.42 14.07 8.18 -92.71 -0.76 13.31 16 34 H 0.05 1.99 6.39 -2.39 -0.02 1.97 16 35 H 0.08 2.37 8.12 -2.39 -0.02 2.35 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.10 3.04 8.04 -2.39 -0.02 3.02 16 38 H 0.09 3.23 8.05 -2.39 -0.02 3.21 16 39 H 0.08 4.54 5.87 -2.39 -0.01 4.53 16 40 H -0.01 -0.60 8.14 -2.39 -0.02 -0.61 16 41 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.03 1.53 7.80 -2.39 -0.02 1.51 16 43 H 0.00 0.26 6.45 -2.39 -0.02 0.24 16 44 H 0.31 -3.86 8.06 -2.91 -0.02 -3.88 16 Total: -1.00 -94.46 367.84 1.15 -93.30 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -1.58 Total: 8.52 kcal Atomic # 6 Polarization: 41.55 SS G_CDS: 11.32 Total: 52.87 kcal Atomic # 7 Polarization: -168.60 SS G_CDS: -10.56 Total: -179.16 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.05 Total: -25.50 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -94.46 1.15 -93.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046521940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 268.736 kcal (2) G-P(sol) polarization free energy of solvation -94.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds