Wall clock time and date at job start Sat Apr 11 2020 07:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 110.91690 * 2 1 4 4 C 1.34783 * 119.99805 * 62.44498 * 3 2 1 5 5 O 1.21578 * 120.00059 * 0.02562 * 4 3 2 6 6 C 1.47540 * 119.99723 * 180.02562 * 4 3 2 7 7 C 1.39917 * 120.31567 * 359.72647 * 6 4 3 8 8 C 1.37750 * 120.04899 * 179.71825 * 7 6 4 9 9 C 1.38636 * 120.43702 * 0.55476 * 8 7 6 10 10 C 1.38356 * 120.05806 * 359.68367 * 9 8 7 11 11 C 1.38765 * 120.14780 * 0.07518 * 10 9 8 12 12 O 1.36186 * 119.69177 * 179.85579 * 11 10 9 13 13 C 1.42914 * 115.91567 * 68.39447 * 12 11 10 14 14 C 1.52060 * 110.76121 * 275.58059 * 13 12 11 15 15 C 1.52066 * 112.37272 * 64.77183 * 14 13 12 16 16 O 1.36499 * 120.28960 * 180.02562 * 10 9 8 17 17 C 1.55441 * 111.12008 * 236.00145 * 2 1 3 18 18 C 1.54323 * 102.96912 * 206.46378 * 17 2 1 19 19 N 1.47024 * 107.27349 * 22.19474 * 18 17 2 20 20 C 1.36931 * 125.65121 * 181.03932 * 19 18 17 21 21 H 1.07995 * 120.00239 * 173.91183 * 20 19 18 22 22 C 1.38813 * 119.99793 * 353.91544 * 20 19 18 23 23 N 1.31622 * 120.00459 * 6.82103 * 22 20 19 24 24 Si 1.86803 * 120.00134 * 186.83026 * 22 20 19 25 25 H 1.48493 * 109.47511 * 94.97953 * 24 22 20 26 26 H 1.48504 * 109.47010 * 214.98387 * 24 22 20 27 27 H 1.48501 * 109.46706 * 334.97961 * 24 22 20 28 28 C 1.47428 * 108.69986 * 1.05645 * 19 18 17 29 29 H 1.08997 * 109.47365 * 297.55459 * 1 2 3 30 30 H 1.08997 * 109.47067 * 57.55310 * 1 2 3 31 31 H 1.08998 * 109.46647 * 177.55205 * 1 2 3 32 32 H 0.96997 * 120.00311 * 242.44733 * 3 2 1 33 33 H 1.08002 * 119.97830 * 0.02562 * 7 6 4 34 34 H 1.08001 * 119.78578 * 180.23048 * 8 7 6 35 35 H 1.08001 * 119.97232 * 179.71050 * 9 8 7 36 36 H 1.08997 * 109.22313 * 35.91511 * 13 12 11 37 37 H 1.09002 * 109.22111 * 155.29486 * 13 12 11 38 38 H 1.08999 * 108.90906 * 185.51887 * 14 13 12 39 39 H 1.09009 * 108.90244 * 304.03087 * 14 13 12 40 40 H 1.09000 * 109.21355 * 55.52412 * 15 14 13 41 41 H 1.08995 * 109.21555 * 174.89318 * 15 14 13 42 42 H 1.09003 * 110.70779 * 88.09046 * 17 2 1 43 43 H 1.08994 * 110.85797 * 324.90716 * 17 2 1 44 44 H 1.09004 * 109.88234 * 262.77282 * 18 17 2 45 45 H 1.09005 * 109.88174 * 141.61136 * 18 17 2 46 46 H 0.96996 * 120.00616 * 180.02562 * 23 22 20 47 47 H 1.08997 * 110.36445 * 94.71022 * 28 19 18 48 48 H 1.08996 * 110.36564 * 216.92373 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.7892 2.1907 1.0349 5 8 1.1176 1.7966 1.9685 6 6 2.3155 3.5691 1.0346 7 6 3.0939 4.0276 -0.0338 8 6 3.5776 5.3174 -0.0312 9 6 3.3084 6.1663 1.0314 10 6 2.5440 5.7230 2.0960 11 6 2.0458 4.4279 2.1048 12 8 1.2969 4.0003 3.1589 13 6 0.0096 4.6055 3.2967 14 6 0.1114 5.9239 4.0475 15 6 0.9134 6.9652 3.2826 16 8 2.2756 6.5549 3.1444 17 6 2.0901 -0.8108 -1.2021 18 6 3.4707 -1.2758 -0.6931 19 7 3.4280 -1.2430 0.7762 20 6 4.4637 -1.5648 1.6121 21 1 4.3647 -1.4150 2.6770 22 6 5.6409 -2.0837 1.0907 23 7 5.8143 -2.1414 -0.2128 24 14 6.9792 -2.7003 2.2389 25 1 6.8329 -4.1659 2.4278 26 1 8.3105 -2.4075 1.6498 27 1 6.8579 -2.0174 3.5521 28 6 2.0852 -0.8065 1.2004 29 1 -0.3634 0.4754 0.9111 30 1 -0.3633 0.5513 -0.8672 31 1 -0.3632 -1.0267 -0.0439 32 1 2.5891 1.6828 -0.7447 33 1 3.3115 3.3715 -0.8636 34 1 4.1749 5.6681 -0.8598 35 1 3.6953 7.1746 1.0279 36 1 -0.4092 4.7876 2.3070 37 1 -0.6473 3.9306 3.8455 38 1 -0.8931 6.3098 4.2215 39 1 0.5910 5.7460 5.0101 40 1 0.4765 7.0985 2.2929 41 1 0.8775 7.9122 3.8210 42 1 2.1973 -0.1739 -2.0802 43 1 1.4525 -1.6666 -1.4238 44 1 4.2462 -0.6015 -1.0566 45 1 3.6693 -2.2914 -1.0355 46 1 6.6367 -2.5042 -0.5772 47 1 1.4519 -1.6703 1.4025 48 1 2.1541 -0.1724 2.0842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046729070.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:27 Heat of formation + Delta-G solvation = -44.034509 kcal Electronic energy + Delta-G solvation = -31887.800584 eV Core-core repulsion = 27716.637141 eV Total energy + Delta-G solvation = -4171.163443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10604 -39.66534 -37.79188 -37.56952 -36.74670 -33.91923 -33.08965 -32.11173 -30.85258 -29.69925 -29.20923 -28.61581 -26.70064 -25.62213 -24.35384 -23.46612 -22.13841 -22.04871 -20.80769 -20.11995 -19.00595 -18.69016 -17.43940 -17.14300 -16.71966 -16.25829 -15.63614 -15.50980 -15.26841 -15.09543 -14.58188 -14.48573 -14.18764 -14.10928 -13.87657 -13.61359 -13.42547 -13.17485 -12.76079 -12.54491 -12.32502 -12.15549 -11.94237 -11.85688 -11.70086 -11.60907 -11.33159 -11.08471 -10.87149 -10.81886 -10.54922 -10.38194 -10.32053 -10.12748 -10.00850 -9.94349 -9.59558 -9.16304 -8.98057 -8.63268 -8.55469 -8.45282 -6.72915 -5.66360 -2.96531 0.69416 0.95746 2.87370 3.28945 3.45500 3.48738 3.51079 3.51945 3.53417 3.90430 4.42634 4.49369 4.57063 4.67950 4.76625 4.87073 4.94426 5.07206 5.09764 5.12224 5.15504 5.21022 5.37489 5.43627 5.51339 5.54720 5.63363 5.65313 5.76711 5.79111 5.92296 6.01435 6.08368 6.13716 6.18557 6.19457 6.34372 6.38550 6.43136 6.58895 6.72149 6.90925 6.99994 7.20367 7.48669 7.56860 7.63943 7.86072 7.95574 8.32122 8.65590 9.29700 9.89891 10.56366 11.46298 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.012556 B = 0.003382 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.509750 B = 8277.570814 C = 8858.632708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.157 3.843 3 N -0.698 5.698 4 C 0.560 3.440 5 O -0.514 6.514 6 C -0.127 4.127 7 C -0.078 4.078 8 C -0.120 4.120 9 C -0.097 4.097 10 C 0.051 3.949 11 C 0.124 3.876 12 O -0.291 6.291 13 C 0.067 3.933 14 C -0.190 4.190 15 C 0.060 3.940 16 O -0.317 6.317 17 C -0.146 4.146 18 C 0.177 3.823 19 N -0.602 5.602 20 C -0.220 4.220 21 H 0.076 0.924 22 C -0.009 4.009 23 N -0.924 5.924 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.131 3.869 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.395 0.605 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.053 0.947 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.103 0.897 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.041 0.959 45 H 0.046 0.954 46 H 0.250 0.750 47 H 0.025 0.975 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.602 19.403 -1.992 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.071 3.929 3 N -0.349 5.349 4 C 0.346 3.654 5 O -0.390 6.390 6 C -0.131 4.131 7 C -0.096 4.096 8 C -0.138 4.138 9 C -0.116 4.116 10 C 0.007 3.993 11 C 0.078 3.922 12 O -0.206 6.206 13 C -0.008 4.008 14 C -0.227 4.227 15 C -0.015 4.015 16 O -0.233 6.233 17 C -0.185 4.185 18 C 0.052 3.948 19 N -0.328 5.328 20 C -0.348 4.348 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.572 5.572 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.207 1.207 28 C 0.004 3.996 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.230 0.770 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.042 0.958 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.713 18.938 -1.039 22.834 hybrid contribution 0.973 -0.099 0.025 0.978 sum -11.741 18.839 -1.014 22.221 Atomic orbital electron populations 1.21973 0.94401 1.01964 1.02276 1.21534 0.92457 0.80600 0.98332 1.45718 1.54232 1.12738 1.22248 1.17778 0.80769 0.84225 0.82662 1.90760 1.38431 1.75832 1.34023 1.20240 1.03006 0.95757 0.94116 1.21366 0.95065 0.96021 0.97195 1.20996 1.00699 0.93400 0.98707 1.21223 0.98532 1.00691 0.91149 1.19079 1.01287 0.89175 0.89753 1.19151 0.94634 0.90959 0.87473 1.86467 1.27636 1.63509 1.43014 1.22539 0.83904 0.94195 1.00121 1.22534 1.01687 0.96464 1.02051 1.22652 0.81092 0.97469 1.00305 1.86410 1.27193 1.63946 1.45794 1.23272 1.00541 0.98842 0.95808 1.21156 0.89865 0.99910 0.83823 1.44430 1.07606 1.79089 1.01722 1.19081 0.91967 1.34278 0.89502 0.90598 1.24761 0.98097 1.01596 0.95987 1.69956 1.26307 1.51453 1.09476 0.86143 0.81285 0.78851 0.79865 1.21694 1.21858 1.20660 1.21886 0.87481 0.94880 0.95337 0.91078 0.93218 0.91845 0.77025 0.84597 0.84474 0.84549 0.92834 0.87683 0.89282 0.89717 0.92522 0.87929 0.91884 0.90844 0.94095 0.93549 0.93944 0.95753 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.60 37.16 0.32 -1.95 16 2 C 0.16 2.83 0.83 -129.51 -0.11 2.72 16 3 N -0.70 -11.75 5.13 -46.50 -0.24 -11.99 16 4 C 0.56 10.05 7.16 -12.46 -0.09 9.97 16 5 O -0.51 -10.59 11.98 -16.47 -0.20 -10.78 16 6 C -0.13 -1.98 5.88 -104.87 -0.62 -2.60 16 7 C -0.08 -0.95 9.54 -39.13 -0.37 -1.32 16 8 C -0.12 -1.22 10.02 -39.61 -0.40 -1.62 16 9 C -0.10 -1.05 9.99 -39.39 -0.39 -1.45 16 10 C 0.05 0.68 5.73 -39.34 -0.23 0.46 16 11 C 0.12 1.93 5.73 -38.79 -0.22 1.71 16 12 O -0.29 -4.82 8.26 -49.14 -0.41 -5.23 16 13 C 0.07 0.79 6.51 36.68 0.24 1.03 16 14 C -0.19 -1.68 5.92 -27.69 -0.16 -1.85 16 15 C 0.06 0.53 6.51 36.68 0.24 0.77 16 16 O -0.32 -4.04 10.17 -36.83 -0.37 -4.41 16 17 C -0.15 -2.60 6.00 -24.74 -0.15 -2.74 16 18 C 0.18 4.22 5.37 -3.06 -0.02 4.21 16 19 N -0.60 -15.80 3.39 -170.07 -0.58 -16.38 16 20 C -0.22 -6.40 10.26 -15.06 -0.15 -6.55 16 21 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 22 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 23 N -0.92 -27.28 10.36 55.49 0.58 -26.71 16 24 Si 0.91 22.90 29.56 -169.99 -5.02 17.88 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 27 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.13 2.97 6.10 -2.53 -0.02 2.95 16 29 H 0.07 1.19 6.53 -51.93 -0.34 0.85 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.91 8.12 -51.93 -0.42 0.48 16 32 H 0.39 5.77 6.54 -40.82 -0.27 5.51 16 33 H 0.14 1.41 6.42 -52.49 -0.34 1.07 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.05 0.58 7.93 -51.93 -0.41 0.17 16 37 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 40 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 43 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 44 H 0.04 1.06 7.55 -51.93 -0.39 0.67 16 45 H 0.05 1.23 7.37 -51.93 -0.38 0.85 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.02 0.56 8.04 -51.93 -0.42 0.14 16 48 H 0.06 1.41 6.31 -51.93 -0.33 1.08 16 LS Contribution 377.61 15.07 5.69 5.69 Total: -1.00 -35.36 377.61 -9.82 -45.18 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.05 Total: 3.37 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -2.22 Total: 3.39 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.24 Total: -55.08 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.98 Total: -20.42 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.36 -9.82 -45.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046729070.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.145 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds