Wall clock time and date at job start Sat Apr 11 2020 07:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 110.91690 * 2 1 4 4 C 1.34783 * 119.99805 * 62.44498 * 3 2 1 5 5 O 1.21578 * 120.00059 * 0.02562 * 4 3 2 6 6 C 1.47540 * 119.99723 * 180.02562 * 4 3 2 7 7 C 1.39917 * 120.31567 * 359.72647 * 6 4 3 8 8 C 1.37750 * 120.04899 * 179.71825 * 7 6 4 9 9 C 1.38636 * 120.43702 * 0.55476 * 8 7 6 10 10 C 1.38356 * 120.05806 * 359.68367 * 9 8 7 11 11 C 1.38765 * 120.14780 * 0.07518 * 10 9 8 12 12 O 1.36186 * 119.69177 * 179.85579 * 11 10 9 13 13 C 1.42914 * 115.91567 * 68.39447 * 12 11 10 14 14 C 1.52060 * 110.76121 * 275.58059 * 13 12 11 15 15 C 1.52066 * 112.37272 * 64.77183 * 14 13 12 16 16 O 1.36499 * 120.28960 * 180.02562 * 10 9 8 17 17 C 1.55441 * 111.12008 * 236.00145 * 2 1 3 18 18 C 1.54323 * 102.96912 * 206.46378 * 17 2 1 19 19 N 1.47024 * 107.27349 * 22.19474 * 18 17 2 20 20 C 1.36931 * 125.65121 * 181.03932 * 19 18 17 21 21 H 1.07995 * 120.00239 * 173.91183 * 20 19 18 22 22 C 1.38813 * 119.99793 * 353.91544 * 20 19 18 23 23 N 1.31622 * 120.00459 * 6.82103 * 22 20 19 24 24 Si 1.86803 * 120.00134 * 186.83026 * 22 20 19 25 25 H 1.48493 * 109.47511 * 94.97953 * 24 22 20 26 26 H 1.48504 * 109.47010 * 214.98387 * 24 22 20 27 27 H 1.48501 * 109.46706 * 334.97961 * 24 22 20 28 28 C 1.47428 * 108.69986 * 1.05645 * 19 18 17 29 29 H 1.08997 * 109.47365 * 297.55459 * 1 2 3 30 30 H 1.08997 * 109.47067 * 57.55310 * 1 2 3 31 31 H 1.08998 * 109.46647 * 177.55205 * 1 2 3 32 32 H 0.96997 * 120.00311 * 242.44733 * 3 2 1 33 33 H 1.08002 * 119.97830 * 0.02562 * 7 6 4 34 34 H 1.08001 * 119.78578 * 180.23048 * 8 7 6 35 35 H 1.08001 * 119.97232 * 179.71050 * 9 8 7 36 36 H 1.08997 * 109.22313 * 35.91511 * 13 12 11 37 37 H 1.09002 * 109.22111 * 155.29486 * 13 12 11 38 38 H 1.08999 * 108.90906 * 185.51887 * 14 13 12 39 39 H 1.09009 * 108.90244 * 304.03087 * 14 13 12 40 40 H 1.09000 * 109.21355 * 55.52412 * 15 14 13 41 41 H 1.08995 * 109.21555 * 174.89318 * 15 14 13 42 42 H 1.09003 * 110.70779 * 88.09046 * 17 2 1 43 43 H 1.08994 * 110.85797 * 324.90716 * 17 2 1 44 44 H 1.09004 * 109.88234 * 262.77282 * 18 17 2 45 45 H 1.09005 * 109.88174 * 141.61136 * 18 17 2 46 46 H 0.96996 * 120.00616 * 180.02562 * 23 22 20 47 47 H 1.08997 * 110.36445 * 94.71022 * 28 19 18 48 48 H 1.08996 * 110.36564 * 216.92373 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.7892 2.1907 1.0349 5 8 1.1176 1.7966 1.9685 6 6 2.3155 3.5691 1.0346 7 6 3.0939 4.0276 -0.0338 8 6 3.5776 5.3174 -0.0312 9 6 3.3084 6.1663 1.0314 10 6 2.5440 5.7230 2.0960 11 6 2.0458 4.4279 2.1048 12 8 1.2969 4.0003 3.1589 13 6 0.0096 4.6055 3.2967 14 6 0.1114 5.9239 4.0475 15 6 0.9134 6.9652 3.2826 16 8 2.2756 6.5549 3.1444 17 6 2.0901 -0.8108 -1.2021 18 6 3.4707 -1.2758 -0.6931 19 7 3.4280 -1.2430 0.7762 20 6 4.4637 -1.5648 1.6121 21 1 4.3647 -1.4150 2.6770 22 6 5.6409 -2.0837 1.0907 23 7 5.8143 -2.1414 -0.2128 24 14 6.9792 -2.7003 2.2389 25 1 6.8329 -4.1659 2.4278 26 1 8.3105 -2.4075 1.6498 27 1 6.8579 -2.0174 3.5521 28 6 2.0852 -0.8065 1.2004 29 1 -0.3634 0.4754 0.9111 30 1 -0.3633 0.5513 -0.8672 31 1 -0.3632 -1.0267 -0.0439 32 1 2.5891 1.6828 -0.7447 33 1 3.3115 3.3715 -0.8636 34 1 4.1749 5.6681 -0.8598 35 1 3.6953 7.1746 1.0279 36 1 -0.4092 4.7876 2.3070 37 1 -0.6473 3.9306 3.8455 38 1 -0.8931 6.3098 4.2215 39 1 0.5910 5.7460 5.0101 40 1 0.4765 7.0985 2.2929 41 1 0.8775 7.9122 3.8210 42 1 2.1973 -0.1739 -2.0802 43 1 1.4525 -1.6666 -1.4238 44 1 4.2462 -0.6015 -1.0566 45 1 3.6693 -2.2914 -1.0355 46 1 6.6367 -2.5042 -0.5772 47 1 1.4519 -1.6703 1.4025 48 1 2.1541 -0.1724 2.0842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046729070.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:26 Heat of formation + Delta-G solvation = -67.158631 kcal Electronic energy + Delta-G solvation = -31888.803321 eV Core-core repulsion = 27716.637141 eV Total energy + Delta-G solvation = -4172.166180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.10883 -41.00890 -39.05943 -38.55342 -38.03842 -35.67254 -34.05421 -33.62384 -32.31804 -31.14758 -30.29595 -30.13388 -27.55513 -27.50453 -25.68779 -25.01845 -23.09312 -22.93831 -22.28436 -21.69661 -20.44808 -19.74739 -18.96041 -18.32823 -18.00807 -17.38761 -17.03625 -16.67078 -16.49112 -16.32513 -15.95595 -15.85627 -15.53916 -15.48401 -15.05619 -14.88783 -14.71393 -14.18332 -14.15760 -13.90437 -13.57785 -13.45009 -13.36509 -13.18933 -13.02387 -12.92436 -12.82347 -12.74473 -12.18716 -12.13325 -12.04505 -11.98975 -11.88409 -11.70465 -11.53932 -11.37369 -11.12654 -10.70173 -10.50429 -10.07320 -9.84307 -9.56572 -8.85545 -7.88423 -5.20437 -0.31046 0.04160 1.41839 1.43151 1.52360 1.81358 2.15484 2.46853 2.48413 2.50154 2.84622 3.29388 3.51351 3.65980 3.69478 3.72962 3.80977 3.90069 4.05660 4.08235 4.17097 4.19279 4.25143 4.31528 4.34539 4.38542 4.55272 4.64591 4.69624 4.77198 4.80262 4.81814 4.87276 4.93592 5.03380 5.05495 5.06332 5.09016 5.16396 5.26737 5.36137 5.41698 5.52897 5.65145 5.71276 5.77191 6.13319 6.19592 6.52829 6.65026 7.11267 7.33230 7.76650 8.41430 9.21825 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.012556 B = 0.003382 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.509750 B = 8277.570814 C = 8858.632708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 N -0.694 5.694 4 C 0.554 3.446 5 O -0.551 6.551 6 C -0.159 4.159 7 C -0.079 4.079 8 C -0.108 4.108 9 C -0.087 4.087 10 C 0.040 3.960 11 C 0.099 3.901 12 O -0.331 6.331 13 C 0.059 3.941 14 C -0.182 4.182 15 C 0.053 3.947 16 O -0.335 6.335 17 C -0.127 4.127 18 C 0.185 3.815 19 N -0.620 5.620 20 C -0.245 4.245 21 H 0.062 0.938 22 C -0.054 4.054 23 N -0.941 5.941 24 Si 0.970 3.030 25 H -0.284 1.284 26 H -0.287 1.287 27 H -0.279 1.279 28 C 0.128 3.872 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.406 0.594 33 H 0.152 0.848 34 H 0.178 0.822 35 H 0.168 0.832 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.132 0.868 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.015 0.985 45 H 0.013 0.987 46 H 0.249 0.751 47 H 0.023 0.977 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.866 21.704 -3.665 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.081 3.919 3 N -0.346 5.346 4 C 0.342 3.658 5 O -0.430 6.430 6 C -0.163 4.163 7 C -0.097 4.097 8 C -0.125 4.125 9 C -0.105 4.105 10 C -0.004 4.004 11 C 0.053 3.947 12 O -0.247 6.247 13 C -0.015 4.015 14 C -0.220 4.220 15 C -0.021 4.021 16 O -0.253 6.253 17 C -0.165 4.165 18 C 0.060 3.940 19 N -0.347 5.347 20 C -0.374 4.374 21 H 0.080 0.920 22 C -0.248 4.248 23 N -0.589 5.589 24 Si 0.799 3.201 25 H -0.211 1.211 26 H -0.213 1.213 27 H -0.204 1.204 28 C 0.002 3.998 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.243 0.757 33 H 0.170 0.830 34 H 0.195 0.805 35 H 0.185 0.815 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.142 0.858 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.150 0.850 42 H 0.119 0.881 43 H 0.111 0.889 44 H 0.033 0.967 45 H 0.031 0.969 46 H 0.058 0.942 47 H 0.041 0.959 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -12.996 21.258 -2.732 25.065 hybrid contribution 1.051 -0.771 0.609 1.439 sum -11.944 20.487 -2.124 23.809 Atomic orbital electron populations 1.21888 0.91846 1.03120 1.02702 1.21412 0.94132 0.80660 0.95722 1.45668 1.54319 1.12076 1.22565 1.18260 0.80131 0.85324 0.82099 1.90729 1.40158 1.76827 1.35296 1.20217 1.05408 0.94586 0.96046 1.21628 0.94269 0.97347 0.96489 1.21439 0.99582 0.92086 0.99412 1.21637 0.96724 1.02089 0.90057 1.19292 1.01795 0.88593 0.90702 1.19477 0.95525 0.92143 0.87524 1.86382 1.29312 1.65161 1.43835 1.22754 0.82431 0.95541 1.00799 1.22494 1.03613 0.95142 1.00705 1.22954 0.79478 0.98266 1.01408 1.86369 1.29344 1.63582 1.45959 1.23150 0.96755 1.00014 0.96562 1.20970 0.92961 0.97560 0.82523 1.44669 1.08197 1.79074 1.02722 1.19266 0.93447 1.35095 0.89582 0.92027 1.25485 0.99993 1.01735 0.97552 1.70135 1.26612 1.51579 1.10614 0.85189 0.78624 0.78228 0.78084 1.21134 1.21306 1.20443 1.21972 0.86353 0.94948 0.96533 0.92883 0.90294 0.90543 0.75696 0.82997 0.80477 0.81455 0.92422 0.87995 0.85830 0.91156 0.91316 0.85024 0.88116 0.88869 0.96660 0.96912 0.94180 0.95914 0.95634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.60 71.98 0.62 -3.39 16 2 C 0.17 5.94 0.83 5.10 0.00 5.95 16 3 N -0.69 -23.21 5.13 -419.30 -2.15 -25.36 16 4 C 0.55 20.51 7.16 86.70 0.62 21.13 16 5 O -0.55 -24.01 11.98 16.85 0.20 -23.81 16 6 C -0.16 -5.00 5.88 -20.03 -0.12 -5.11 16 7 C -0.08 -1.80 9.54 22.56 0.22 -1.58 16 8 C -0.11 -1.84 10.02 22.25 0.22 -1.62 16 9 C -0.09 -1.63 9.99 22.39 0.22 -1.41 16 10 C 0.04 1.04 5.73 22.42 0.13 1.17 16 11 C 0.10 3.16 5.73 22.79 0.13 3.29 16 12 O -0.33 -11.60 8.26 -68.13 -0.56 -12.17 16 13 C 0.06 1.44 6.51 71.67 0.47 1.90 16 14 C -0.18 -3.11 5.92 29.98 0.18 -2.93 16 15 C 0.05 0.85 6.51 71.67 0.47 1.31 16 16 O -0.34 -8.20 10.17 -84.51 -0.86 -9.06 16 17 C -0.13 -4.28 6.00 31.88 0.19 -4.08 16 18 C 0.18 8.92 5.37 86.73 0.47 9.38 16 19 N -0.62 -33.67 3.39 -691.98 -2.35 -36.02 16 20 C -0.24 -14.78 10.26 84.03 0.86 -13.92 16 21 H 0.06 3.78 7.84 -2.91 -0.02 3.76 16 22 C -0.05 -3.18 5.48 84.86 0.47 -2.72 16 23 N -0.94 -56.64 10.36 21.65 0.22 -56.41 16 24 Si 0.97 47.94 29.56 68.60 2.03 49.97 16 25 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 28 C 0.13 6.01 6.10 86.86 0.53 6.54 16 29 H 0.05 1.77 6.53 -2.39 -0.02 1.76 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 2.03 8.12 -2.39 -0.02 2.01 16 32 H 0.41 11.41 6.54 -92.71 -0.61 10.80 16 33 H 0.15 2.83 6.42 -2.91 -0.02 2.82 16 34 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 35 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 36 H 0.06 1.29 7.93 -2.39 -0.02 1.28 16 37 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.07 0.93 7.93 -2.39 -0.02 0.91 16 41 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.10 2.69 8.05 -2.39 -0.02 2.67 16 43 H 0.09 2.84 8.03 -2.39 -0.02 2.82 16 44 H 0.02 0.80 7.55 -2.39 -0.02 0.78 16 45 H 0.01 0.69 7.37 -2.38 -0.02 0.67 16 46 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 47 H 0.02 1.07 8.04 -2.39 -0.02 1.05 16 48 H 0.03 1.35 6.31 -2.39 -0.02 1.33 16 Total: -1.00 -82.51 377.61 2.58 -79.93 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.38 Total: 19.00 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 5.67 Total: 13.93 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -4.27 Total: -117.79 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -1.22 Total: -45.04 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -82.51 2.58 -79.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046729070.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.772 kcal (2) G-P(sol) polarization free energy of solvation -82.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds