Wall clock time and date at job start Sat Apr 11 2020 07:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 110.64066 * 2 1 4 4 C 1.34772 * 120.00538 * 298.31671 * 3 2 1 5 5 O 1.21597 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.47546 * 120.00531 * 179.97438 * 4 3 2 7 7 C 1.39911 * 120.30884 * 359.96007 * 6 4 3 8 8 C 1.37753 * 120.04525 * 180.02562 * 7 6 4 9 9 C 1.38630 * 120.43890 * 359.97438 * 8 7 6 10 10 C 1.38360 * 120.05967 * 0.04551 * 9 8 7 11 11 C 1.38773 * 120.14351 * 359.94285 * 10 9 8 12 12 O 1.36183 * 119.67568 * 180.02562 * 11 10 9 13 13 C 1.42919 * 115.90679 * 291.62940 * 12 11 10 14 14 C 1.52068 * 110.72704 * 84.45684 * 13 12 11 15 15 C 1.52070 * 112.37281 * 295.14113 * 14 13 12 16 16 O 1.36482 * 120.27760 * 179.97438 * 10 9 8 17 17 C 1.55153 * 110.87163 * 123.25378 * 2 1 3 18 18 C 1.54915 * 101.58110 * 153.93686 * 17 2 1 19 19 N 1.47428 * 104.82926 * 322.98699 * 18 17 2 20 20 C 1.36933 * 125.64705 * 204.09218 * 19 18 17 21 21 H 1.08000 * 119.99995 * 169.98836 * 20 19 18 22 22 C 1.38819 * 120.00054 * 349.98793 * 20 19 18 23 23 N 1.31615 * 119.99945 * 350.42020 * 22 20 19 24 24 Si 1.86798 * 120.00101 * 170.42038 * 22 20 19 25 25 H 1.48494 * 109.47122 * 94.13858 * 24 22 20 26 26 H 1.48498 * 109.47145 * 214.14101 * 24 22 20 27 27 H 1.48507 * 109.46954 * 334.14098 * 24 22 20 28 28 C 1.47015 * 108.70274 * 24.13235 * 19 18 17 29 29 H 1.08996 * 109.47411 * 59.29685 * 1 2 3 30 30 H 1.09000 * 109.46986 * 179.29396 * 1 2 3 31 31 H 1.08997 * 109.47041 * 299.29642 * 1 2 3 32 32 H 0.97000 * 119.99746 * 118.31480 * 3 2 1 33 33 H 1.07994 * 119.97867 * 359.97438 * 7 6 4 34 34 H 1.08002 * 119.78056 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.96953 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.22101 * 204.76254 * 13 12 11 37 37 H 1.09000 * 109.22054 * 324.14888 * 13 12 11 38 38 H 1.09002 * 108.90023 * 55.93874 * 14 13 12 39 39 H 1.09005 * 108.89691 * 174.44007 * 14 13 12 40 40 H 1.09000 * 109.25030 * 304.53933 * 15 14 13 41 41 H 1.08996 * 109.18706 * 185.16087 * 15 14 13 42 42 H 1.09001 * 110.99887 * 272.00275 * 17 2 1 43 43 H 1.08997 * 111.00562 * 35.85938 * 17 2 1 44 44 H 1.09001 * 110.36428 * 204.15039 * 18 17 2 45 45 H 1.09000 * 110.45932 * 81.87564 * 18 17 2 46 46 H 0.96992 * 120.00233 * 179.97438 * 23 22 20 47 47 H 1.09005 * 109.88374 * 239.52186 * 28 19 18 48 48 H 1.09000 * 110.01396 * 118.43010 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.7660 2.1968 -1.0274 5 8 1.0846 1.8039 -1.9548 6 6 2.2856 3.5777 -1.0272 7 6 3.0695 4.0370 0.0368 8 6 3.5514 5.3274 0.0318 9 6 3.2658 6.1797 -1.0237 10 6 2.4913 5.7374 -2.0815 11 6 1.9991 4.4399 -2.0902 12 8 1.2382 4.0144 -3.1364 13 6 -0.0534 4.6148 -3.2540 14 6 0.0336 5.9370 -4.0002 15 6 0.8402 6.9785 -3.2404 16 8 2.2069 6.5728 -3.1226 17 6 2.0828 -0.7950 1.2123 18 6 3.4674 -1.2456 0.6835 19 7 3.2471 -1.5461 -0.7429 20 6 4.0076 -2.3899 -1.5074 21 1 3.6747 -2.6709 -2.4956 22 6 5.2066 -2.8842 -1.0123 23 7 5.7063 -2.4008 0.1053 24 14 6.1109 -4.2354 -1.9320 25 1 7.1217 -3.6286 -2.8349 26 1 6.7892 -5.1284 -0.9586 27 1 5.1404 -5.0233 -2.7339 28 6 2.0760 -0.7891 -1.2087 29 1 -0.3634 0.5247 -0.8836 30 1 -0.3633 -1.0276 -0.0127 31 1 -0.3633 0.5029 0.8962 32 1 2.5903 1.6843 0.7396 33 1 3.2963 3.3795 0.8631 34 1 4.1565 5.6773 0.8551 35 1 3.6478 7.1898 -1.0201 36 1 -0.7150 3.9395 -3.7966 37 1 -0.4592 4.7911 -2.2578 38 1 0.5015 5.7652 -4.9696 39 1 -0.9746 6.3194 -4.1596 40 1 0.4158 7.1053 -2.2444 41 1 0.7926 7.9276 -3.7741 42 1 2.1887 -0.1516 2.0858 43 1 1.4514 -1.6547 1.4365 44 1 3.8032 -2.1379 1.2118 45 1 4.1970 -0.4432 0.7939 46 1 6.5439 -2.7463 0.4514 47 1 1.3140 -1.4753 -1.5782 48 1 2.3686 -0.0992 -2.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046729071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:30 Heat of formation + Delta-G solvation = -44.335376 kcal Electronic energy + Delta-G solvation = -31698.119818 eV Core-core repulsion = 27526.943329 eV Total energy + Delta-G solvation = -4171.176490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.14679 -39.73527 -37.82967 -37.60429 -36.78845 -33.97543 -33.11675 -32.13262 -30.89410 -29.68803 -29.24232 -28.64021 -26.72820 -25.65609 -24.38691 -23.44531 -22.17532 -22.06681 -20.78619 -20.31109 -18.98315 -18.73483 -17.46090 -17.17244 -16.72650 -16.32131 -15.66680 -15.53863 -15.30963 -15.13002 -14.63954 -14.51097 -14.20982 -14.11580 -13.90638 -13.66649 -13.43849 -13.09045 -12.75449 -12.57853 -12.36339 -12.26129 -12.08854 -11.86206 -11.67104 -11.55576 -11.36043 -11.11336 -10.92918 -10.76732 -10.57790 -10.39734 -10.35293 -10.19038 -10.04660 -9.92303 -9.63986 -9.21115 -9.02625 -8.67334 -8.55325 -8.51718 -6.71855 -5.69426 -2.99922 0.64705 0.91451 2.82704 3.25140 3.43673 3.44871 3.47376 3.49857 3.52323 3.85557 4.40233 4.46579 4.55313 4.64382 4.72107 4.84653 4.91027 5.04124 5.06989 5.11020 5.11928 5.18786 5.35159 5.41451 5.50326 5.53135 5.58665 5.61121 5.75764 5.76999 5.87899 6.00273 6.06118 6.11211 6.17300 6.22988 6.29954 6.35899 6.45636 6.53893 6.73993 6.91213 6.96613 7.21072 7.44995 7.49850 7.58179 7.81976 7.89416 8.31754 8.59740 9.26214 9.87931 10.55659 11.44273 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.002986 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.214816 B = 9376.311703 C = 9551.125419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.162 3.838 3 N -0.704 5.704 4 C 0.558 3.442 5 O -0.511 6.511 6 C -0.129 4.129 7 C -0.079 4.079 8 C -0.120 4.120 9 C -0.097 4.097 10 C 0.052 3.948 11 C 0.124 3.876 12 O -0.291 6.291 13 C 0.067 3.933 14 C -0.190 4.190 15 C 0.059 3.941 16 O -0.317 6.317 17 C -0.148 4.148 18 C 0.174 3.826 19 N -0.603 5.603 20 C -0.222 4.222 21 H 0.075 0.925 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.136 3.864 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.395 0.605 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.025 0.975 46 H 0.251 0.749 47 H 0.030 0.970 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.798 20.823 2.367 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.076 3.924 3 N -0.356 5.356 4 C 0.344 3.656 5 O -0.387 6.387 6 C -0.132 4.132 7 C -0.098 4.098 8 C -0.138 4.138 9 C -0.116 4.116 10 C 0.008 3.992 11 C 0.078 3.922 12 O -0.207 6.207 13 C -0.008 4.008 14 C -0.227 4.227 15 C -0.015 4.015 16 O -0.233 6.233 17 C -0.187 4.187 18 C 0.049 3.951 19 N -0.329 5.329 20 C -0.351 4.351 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.009 3.991 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.230 0.770 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.124 0.876 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.043 0.957 46 H 0.061 0.939 47 H 0.047 0.953 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.958 20.321 1.408 23.620 hybrid contribution 0.766 -0.356 0.017 0.845 sum -11.192 19.965 1.425 22.932 Atomic orbital electron populations 1.22027 0.94303 1.02231 1.02144 1.21314 0.92891 0.80228 0.97951 1.45891 1.53958 1.12721 1.23064 1.17815 0.80894 0.84263 0.82646 1.90784 1.37770 1.76004 1.34152 1.20231 1.03075 0.95676 0.94247 1.21366 0.95154 0.96093 0.97138 1.20999 1.00671 0.93367 0.98744 1.21236 0.98414 1.00706 0.91215 1.19082 1.01132 0.89098 0.89925 1.19159 0.94523 0.90939 0.87598 1.86464 1.26898 1.63934 1.43365 1.22551 0.83767 0.94235 1.00210 1.22534 1.01678 0.96409 1.02108 1.22677 0.80901 0.97560 1.00395 1.86435 1.27090 1.63738 1.46084 1.23345 1.01119 0.98999 0.95209 1.21391 0.89441 0.99404 0.84869 1.44479 1.30865 1.50798 1.06751 1.19044 0.99504 1.18223 0.98329 0.90702 1.24784 0.96812 1.00733 0.98196 1.69937 1.20567 1.44009 1.22378 0.86132 0.79607 0.81650 0.78597 1.21693 1.21683 1.20616 1.21612 0.90348 0.93094 0.94025 0.91021 0.91745 0.93212 0.77015 0.84572 0.84440 0.84515 0.87638 0.92809 0.89692 0.89258 0.92476 0.87899 0.91805 0.90503 0.91208 0.95707 0.93866 0.95263 0.94536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.45 37.16 0.31 -2.01 16 2 C 0.16 2.93 0.81 -129.98 -0.11 2.82 16 3 N -0.70 -11.56 5.10 -46.93 -0.24 -11.80 16 4 C 0.56 9.80 6.99 -12.47 -0.09 9.71 16 5 O -0.51 -10.42 12.10 -16.48 -0.20 -10.61 16 6 C -0.13 -1.93 5.88 -104.88 -0.62 -2.55 16 7 C -0.08 -0.91 9.54 -39.13 -0.37 -1.29 16 8 C -0.12 -1.15 10.02 -39.61 -0.40 -1.55 16 9 C -0.10 -1.00 9.99 -39.39 -0.39 -1.40 16 10 C 0.05 0.67 5.72 -39.34 -0.23 0.44 16 11 C 0.12 1.88 5.73 -38.79 -0.22 1.66 16 12 O -0.29 -4.73 8.26 -49.13 -0.41 -5.14 16 13 C 0.07 0.77 6.51 36.68 0.24 1.01 16 14 C -0.19 -1.64 5.92 -27.68 -0.16 -1.80 16 15 C 0.06 0.51 6.52 36.68 0.24 0.75 16 16 O -0.32 -3.93 10.17 -36.77 -0.37 -4.30 16 17 C -0.15 -2.64 6.09 -24.58 -0.15 -2.79 16 18 C 0.17 4.13 5.40 -2.52 -0.01 4.12 16 19 N -0.60 -15.94 3.39 -170.07 -0.58 -16.51 16 20 C -0.22 -6.47 10.24 -15.06 -0.15 -6.62 16 21 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 22 C -0.01 -0.27 5.40 -17.43 -0.09 -0.36 16 23 N -0.92 -27.25 10.68 55.49 0.59 -26.65 16 24 Si 0.91 22.71 29.56 -169.99 -5.03 17.68 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 C 0.14 3.12 6.13 -3.07 -0.02 3.10 16 29 H 0.07 1.22 6.38 -51.93 -0.33 0.88 16 30 H 0.06 0.97 8.12 -51.93 -0.42 0.54 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.39 5.49 6.51 -40.82 -0.27 5.23 16 33 H 0.14 1.30 6.42 -52.49 -0.34 0.97 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.57 7.93 -51.93 -0.41 0.16 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.43 7.93 -51.93 -0.41 0.02 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.94 8.04 -51.93 -0.42 0.53 16 43 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 44 H 0.07 1.84 6.94 -51.93 -0.36 1.48 16 45 H 0.02 0.63 8.07 -51.93 -0.42 0.21 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.03 0.68 7.80 -51.93 -0.41 0.27 16 48 H 0.04 0.94 6.47 -51.93 -0.34 0.60 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -35.56 377.58 -9.80 -45.36 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.04 Total: 3.03 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -2.22 Total: 3.25 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.22 Total: -54.97 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.98 Total: -20.05 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.56 -9.80 -45.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046729071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.027 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds