Wall clock time and date at job start Sat Apr 11 2020 07:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 110.64066 * 2 1 4 4 C 1.34772 * 120.00538 * 298.31671 * 3 2 1 5 5 O 1.21597 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.47546 * 120.00531 * 179.97438 * 4 3 2 7 7 C 1.39911 * 120.30884 * 359.96007 * 6 4 3 8 8 C 1.37753 * 120.04525 * 180.02562 * 7 6 4 9 9 C 1.38630 * 120.43890 * 359.97438 * 8 7 6 10 10 C 1.38360 * 120.05967 * 0.04551 * 9 8 7 11 11 C 1.38773 * 120.14351 * 359.94285 * 10 9 8 12 12 O 1.36183 * 119.67568 * 180.02562 * 11 10 9 13 13 C 1.42919 * 115.90679 * 291.62940 * 12 11 10 14 14 C 1.52068 * 110.72704 * 84.45684 * 13 12 11 15 15 C 1.52070 * 112.37281 * 295.14113 * 14 13 12 16 16 O 1.36482 * 120.27760 * 179.97438 * 10 9 8 17 17 C 1.55153 * 110.87163 * 123.25378 * 2 1 3 18 18 C 1.54915 * 101.58110 * 153.93686 * 17 2 1 19 19 N 1.47428 * 104.82926 * 322.98699 * 18 17 2 20 20 C 1.36933 * 125.64705 * 204.09218 * 19 18 17 21 21 H 1.08000 * 119.99995 * 169.98836 * 20 19 18 22 22 C 1.38819 * 120.00054 * 349.98793 * 20 19 18 23 23 N 1.31615 * 119.99945 * 350.42020 * 22 20 19 24 24 Si 1.86798 * 120.00101 * 170.42038 * 22 20 19 25 25 H 1.48494 * 109.47122 * 94.13858 * 24 22 20 26 26 H 1.48498 * 109.47145 * 214.14101 * 24 22 20 27 27 H 1.48507 * 109.46954 * 334.14098 * 24 22 20 28 28 C 1.47015 * 108.70274 * 24.13235 * 19 18 17 29 29 H 1.08996 * 109.47411 * 59.29685 * 1 2 3 30 30 H 1.09000 * 109.46986 * 179.29396 * 1 2 3 31 31 H 1.08997 * 109.47041 * 299.29642 * 1 2 3 32 32 H 0.97000 * 119.99746 * 118.31480 * 3 2 1 33 33 H 1.07994 * 119.97867 * 359.97438 * 7 6 4 34 34 H 1.08002 * 119.78056 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.96953 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.22101 * 204.76254 * 13 12 11 37 37 H 1.09000 * 109.22054 * 324.14888 * 13 12 11 38 38 H 1.09002 * 108.90023 * 55.93874 * 14 13 12 39 39 H 1.09005 * 108.89691 * 174.44007 * 14 13 12 40 40 H 1.09000 * 109.25030 * 304.53933 * 15 14 13 41 41 H 1.08996 * 109.18706 * 185.16087 * 15 14 13 42 42 H 1.09001 * 110.99887 * 272.00275 * 17 2 1 43 43 H 1.08997 * 111.00562 * 35.85938 * 17 2 1 44 44 H 1.09001 * 110.36428 * 204.15039 * 18 17 2 45 45 H 1.09000 * 110.45932 * 81.87564 * 18 17 2 46 46 H 0.96992 * 120.00233 * 179.97438 * 23 22 20 47 47 H 1.09005 * 109.88374 * 239.52186 * 28 19 18 48 48 H 1.09000 * 110.01396 * 118.43010 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.7660 2.1968 -1.0274 5 8 1.0846 1.8039 -1.9548 6 6 2.2856 3.5777 -1.0272 7 6 3.0695 4.0370 0.0368 8 6 3.5514 5.3274 0.0318 9 6 3.2658 6.1797 -1.0237 10 6 2.4913 5.7374 -2.0815 11 6 1.9991 4.4399 -2.0902 12 8 1.2382 4.0144 -3.1364 13 6 -0.0534 4.6148 -3.2540 14 6 0.0336 5.9370 -4.0002 15 6 0.8402 6.9785 -3.2404 16 8 2.2069 6.5728 -3.1226 17 6 2.0828 -0.7950 1.2123 18 6 3.4674 -1.2456 0.6835 19 7 3.2471 -1.5461 -0.7429 20 6 4.0076 -2.3899 -1.5074 21 1 3.6747 -2.6709 -2.4956 22 6 5.2066 -2.8842 -1.0123 23 7 5.7063 -2.4008 0.1053 24 14 6.1109 -4.2354 -1.9320 25 1 7.1217 -3.6286 -2.8349 26 1 6.7892 -5.1284 -0.9586 27 1 5.1404 -5.0233 -2.7339 28 6 2.0760 -0.7891 -1.2087 29 1 -0.3634 0.5247 -0.8836 30 1 -0.3633 -1.0276 -0.0127 31 1 -0.3633 0.5029 0.8962 32 1 2.5903 1.6843 0.7396 33 1 3.2963 3.3795 0.8631 34 1 4.1565 5.6773 0.8551 35 1 3.6478 7.1898 -1.0201 36 1 -0.7150 3.9395 -3.7966 37 1 -0.4592 4.7911 -2.2578 38 1 0.5015 5.7652 -4.9696 39 1 -0.9746 6.3194 -4.1596 40 1 0.4158 7.1053 -2.2444 41 1 0.7926 7.9276 -3.7741 42 1 2.1887 -0.1516 2.0858 43 1 1.4514 -1.6547 1.4365 44 1 3.8032 -2.1379 1.2118 45 1 4.1970 -0.4432 0.7939 46 1 6.5439 -2.7463 0.4514 47 1 1.3140 -1.4753 -1.5782 48 1 2.3686 -0.0992 -2.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046729071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:30 Heat of formation + Delta-G solvation = -67.749808 kcal Electronic energy + Delta-G solvation = -31699.135144 eV Core-core repulsion = 27526.943329 eV Total energy + Delta-G solvation = -4172.191816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.12458 -41.06079 -39.08439 -38.55740 -38.05256 -35.71771 -34.05912 -33.63659 -32.34287 -31.11030 -30.33316 -30.14059 -27.58856 -27.52119 -25.68962 -24.99034 -23.08449 -22.93491 -22.34794 -21.79206 -20.44191 -19.74984 -18.94435 -18.36006 -18.01079 -17.40949 -17.02639 -16.72831 -16.51633 -16.33231 -15.95161 -15.86116 -15.61197 -15.41144 -15.05733 -14.82966 -14.67584 -14.30001 -14.14859 -14.04950 -13.60063 -13.44295 -13.28820 -13.20286 -13.03776 -12.94244 -12.84324 -12.73106 -12.18317 -12.15301 -12.03040 -11.94685 -11.90104 -11.74610 -11.60607 -11.37865 -11.13873 -10.69905 -10.53156 -10.10022 -9.86040 -9.56852 -8.86088 -7.90805 -5.23926 -0.32045 0.03850 1.43205 1.44401 1.54510 1.79691 2.11624 2.46496 2.47792 2.50008 2.84440 3.27749 3.51638 3.68073 3.69254 3.70070 3.79590 3.89918 4.00816 4.07647 4.16419 4.16653 4.24918 4.31077 4.34252 4.38334 4.54801 4.61709 4.67638 4.76912 4.80071 4.80894 4.85375 4.92240 5.01690 5.05008 5.05832 5.09667 5.16452 5.26526 5.33763 5.41169 5.52958 5.58909 5.66850 5.74292 6.12714 6.19433 6.52200 6.62388 7.08177 7.30462 7.74228 8.40667 9.20805 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.002986 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.214816 B = 9376.311703 C = 9551.125419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.172 3.828 3 N -0.699 5.699 4 C 0.553 3.447 5 O -0.550 6.550 6 C -0.159 4.159 7 C -0.078 4.078 8 C -0.107 4.107 9 C -0.087 4.087 10 C 0.041 3.959 11 C 0.098 3.902 12 O -0.331 6.331 13 C 0.059 3.941 14 C -0.182 4.182 15 C 0.053 3.947 16 O -0.336 6.336 17 C -0.126 4.126 18 C 0.178 3.822 19 N -0.622 5.622 20 C -0.250 4.250 21 H 0.065 0.935 22 C -0.056 4.056 23 N -0.941 5.941 24 Si 0.975 3.025 25 H -0.289 1.289 26 H -0.284 1.284 27 H -0.273 1.273 28 C 0.136 3.864 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.408 0.592 33 H 0.155 0.845 34 H 0.179 0.821 35 H 0.168 0.832 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.039 0.961 45 H 0.004 0.996 46 H 0.250 0.750 47 H 0.022 0.978 48 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.011 22.946 4.251 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.086 3.914 3 N -0.351 5.351 4 C 0.341 3.659 5 O -0.429 6.429 6 C -0.163 4.163 7 C -0.097 4.097 8 C -0.124 4.124 9 C -0.105 4.105 10 C -0.004 4.004 11 C 0.052 3.948 12 O -0.247 6.247 13 C -0.015 4.015 14 C -0.220 4.220 15 C -0.021 4.021 16 O -0.253 6.253 17 C -0.165 4.165 18 C 0.054 3.946 19 N -0.348 5.348 20 C -0.379 4.379 21 H 0.083 0.917 22 C -0.250 4.250 23 N -0.589 5.589 24 Si 0.803 3.197 25 H -0.216 1.216 26 H -0.210 1.210 27 H -0.198 1.198 28 C 0.010 3.990 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.245 0.755 33 H 0.173 0.827 34 H 0.196 0.804 35 H 0.185 0.815 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.150 0.850 42 H 0.125 0.875 43 H 0.108 0.892 44 H 0.057 0.943 45 H 0.022 0.978 46 H 0.059 0.941 47 H 0.040 0.960 48 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -12.183 22.469 3.317 25.774 hybrid contribution 0.849 -0.952 -0.633 1.424 sum -11.334 21.517 2.684 24.467 Atomic orbital electron populations 1.21938 0.91965 1.02892 1.02874 1.21162 0.94417 0.80518 0.95350 1.45787 1.54066 1.11831 1.23461 1.18311 0.80199 0.85400 0.82020 1.90753 1.39597 1.77036 1.35514 1.20187 1.05510 0.94352 0.96210 1.21648 0.94195 0.97414 0.96413 1.21451 0.99561 0.92058 0.99376 1.21653 0.96588 1.02128 0.90122 1.19293 1.01703 0.88490 0.90872 1.19499 0.95426 0.92164 0.87701 1.86379 1.28543 1.65560 1.44249 1.22759 0.82328 0.95569 1.00877 1.22494 1.03603 0.95096 1.00761 1.22972 0.79298 0.98331 1.01489 1.86395 1.29184 1.63391 1.46316 1.23216 0.97104 1.00022 0.96128 1.21255 0.92525 0.97349 0.83514 1.44777 1.31283 1.50784 1.07982 1.19310 1.00532 1.19439 0.98662 0.91697 1.25570 0.97465 1.02743 0.99246 1.70107 1.20651 1.44777 1.23368 0.85129 0.78216 0.78870 0.77473 1.21580 1.21027 1.19836 1.21668 0.89226 0.92554 0.95600 0.92767 0.91048 0.90021 0.75450 0.82713 0.80377 0.81467 0.88048 0.92394 0.91146 0.85873 0.91269 0.85037 0.87533 0.89243 0.94273 0.97839 0.94057 0.95990 0.98073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 8.45 71.98 0.61 -3.55 16 2 C 0.17 6.15 0.81 4.79 0.00 6.15 16 3 N -0.70 -22.73 5.10 -420.66 -2.14 -24.87 16 4 C 0.55 20.01 6.99 86.70 0.61 20.62 16 5 O -0.55 -23.81 12.10 16.79 0.20 -23.60 16 6 C -0.16 -4.81 5.88 -20.03 -0.12 -4.93 16 7 C -0.08 -1.67 9.54 22.56 0.22 -1.45 16 8 C -0.11 -1.69 10.02 22.25 0.22 -1.46 16 9 C -0.09 -1.54 9.99 22.39 0.22 -1.32 16 10 C 0.04 1.01 5.72 22.43 0.13 1.14 16 11 C 0.10 3.04 5.73 22.78 0.13 3.17 16 12 O -0.33 -11.42 8.26 -68.09 -0.56 -11.99 16 13 C 0.06 1.41 6.51 71.67 0.47 1.88 16 14 C -0.18 -3.04 5.92 29.98 0.18 -2.86 16 15 C 0.05 0.82 6.52 71.68 0.47 1.29 16 16 O -0.34 -7.99 10.17 -84.31 -0.86 -8.85 16 17 C -0.13 -4.29 6.09 31.99 0.19 -4.09 16 18 C 0.18 8.58 5.40 86.86 0.47 9.05 16 19 N -0.62 -34.05 3.39 -691.97 -2.35 -36.40 16 20 C -0.25 -15.08 10.24 84.04 0.86 -14.22 16 21 H 0.07 3.91 7.85 -2.91 -0.02 3.89 16 22 C -0.06 -3.32 5.40 84.86 0.46 -2.86 16 23 N -0.94 -56.73 10.68 21.65 0.23 -56.50 16 24 Si 0.98 47.48 29.56 68.60 2.03 49.50 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 28 C 0.14 6.51 6.13 86.73 0.53 7.04 16 29 H 0.05 1.85 6.38 -2.39 -0.02 1.83 16 30 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.41 10.76 6.51 -92.71 -0.60 10.16 16 33 H 0.16 2.57 6.42 -2.91 -0.02 2.56 16 34 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.06 1.28 7.93 -2.39 -0.02 1.26 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.07 0.90 7.93 -2.39 -0.02 0.88 16 41 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.11 2.75 8.04 -2.39 -0.02 2.73 16 43 H 0.09 2.87 8.05 -2.39 -0.02 2.85 16 44 H 0.04 2.10 6.94 -2.39 -0.02 2.09 16 45 H 0.00 0.19 8.07 -2.39 -0.02 0.17 16 46 H 0.25 14.53 8.31 -92.71 -0.77 13.75 16 47 H 0.02 1.07 7.80 -2.38 -0.02 1.05 16 48 H 0.00 0.07 6.47 -2.39 -0.02 0.05 16 Total: -1.00 -83.31 377.58 2.58 -80.73 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.38 Total: 18.38 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 5.65 Total: 13.60 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -4.26 Total: -117.77 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -1.22 Total: -44.44 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.50 kcal Total: -83.31 2.58 -80.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046729071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.979 kcal (2) G-P(sol) polarization free energy of solvation -83.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds