Wall clock time and date at job start Sat Apr 11 2020 07:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35964 * 120.56713 * 2 1 4 4 C 1.40845 * 119.33795 * 180.02562 * 3 2 1 5 5 O 1.21853 * 119.75145 * 180.02562 * 4 3 2 6 6 O 1.34371 * 120.48720 * 359.97438 * 4 3 2 7 7 C 1.33723 * 121.21277 * 359.73721 * 6 4 3 8 8 C 1.50697 * 119.69658 * 180.25858 * 7 6 4 9 9 C 1.37601 * 120.61496 * 0.52472 * 7 6 4 10 10 C 1.47519 * 120.25946 * 179.75325 * 9 7 6 11 11 O 1.21590 * 120.00463 * 269.72635 * 10 9 7 12 12 N 1.34782 * 119.99390 * 89.72206 * 10 9 7 13 13 C 1.46501 * 119.99604 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.32581 * 35.35958 * 13 12 10 15 15 C 1.53033 * 109.32379 * 155.00356 * 13 12 10 16 16 C 1.53967 * 108.82772 * 175.67732 * 15 13 12 17 17 H 1.09000 * 112.99633 * 168.09181 * 16 15 13 18 18 C 1.55432 * 106.41409 * 293.82323 * 16 15 13 19 19 C 1.55448 * 100.23539 * 73.19477 * 18 16 15 20 20 H 1.08996 * 113.04637 * 163.20839 * 19 18 16 21 21 C 1.52994 * 109.32416 * 275.89052 * 13 12 10 22 22 N 1.47792 * 104.11637 * 40.86802 * 19 18 16 23 23 C 1.36929 * 125.85643 * 153.44251 * 22 19 18 24 24 H 1.07998 * 120.00144 * 349.87353 * 23 22 19 25 25 C 1.38811 * 119.99926 * 169.86779 * 23 22 19 26 26 N 1.31624 * 119.99935 * 164.82610 * 25 23 22 27 27 Si 1.86798 * 120.00340 * 344.82619 * 25 23 22 28 28 H 1.48492 * 109.47478 * 185.51381 * 27 25 23 29 29 H 1.48501 * 109.47351 * 305.52110 * 27 25 23 30 30 H 1.48504 * 109.46939 * 65.51613 * 27 25 23 31 31 C 1.47085 * 108.28563 * 333.17670 * 22 19 18 32 32 H 1.09004 * 109.47548 * 269.97697 * 1 2 3 33 33 H 1.08999 * 109.47020 * 29.98640 * 1 2 3 34 34 H 1.09007 * 109.46896 * 149.98160 * 1 2 3 35 35 H 1.08001 * 120.33114 * 359.97438 * 3 2 1 36 36 H 1.09001 * 109.47133 * 270.26585 * 8 7 6 37 37 H 1.08998 * 109.46824 * 30.26389 * 8 7 6 38 38 H 1.08995 * 109.47219 * 150.26172 * 8 7 6 39 39 H 0.96995 * 119.99977 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.57742 * 55.87122 * 15 13 12 41 41 H 1.08995 * 109.68171 * 295.54885 * 15 13 12 42 42 H 1.09005 * 111.23288 * 191.15568 * 18 16 15 43 43 H 1.08999 * 111.23631 * 315.59766 * 18 16 15 44 44 H 1.08997 * 109.53390 * 304.53373 * 21 13 12 45 45 H 1.09002 * 109.52888 * 64.68368 * 21 13 12 46 46 H 0.96997 * 120.00286 * 354.93666 * 26 25 23 47 47 H 1.09003 * 109.97530 * 120.72038 * 31 22 19 48 48 H 1.08998 * 109.97637 * 242.00189 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6065 1.1405 -0.0005 5 8 4.2337 2.1852 -0.0001 6 8 4.2632 -0.0318 -0.0006 7 6 3.6042 -1.1953 0.0052 8 6 4.3752 -2.4901 0.0109 9 6 2.2284 -1.2214 0.0005 10 6 1.5094 -2.5095 0.0014 11 8 1.2123 -3.0408 -1.0512 12 7 1.1818 -3.0975 1.1691 13 6 0.4682 -4.3769 1.1701 14 1 0.8119 -4.9823 0.3314 15 6 0.7552 -5.1159 2.4791 16 6 -0.0842 -6.4061 2.5158 17 1 0.2150 -7.0862 3.3133 18 6 -1.5713 -5.9606 2.5927 19 6 -1.7826 -5.4513 1.1393 20 1 -2.8342 -5.3540 0.8699 21 6 -1.0327 -4.1196 1.0227 22 7 -1.0752 -6.4436 0.3032 23 6 -1.3660 -6.7475 -0.9999 24 1 -2.2698 -6.3690 -1.4540 25 6 -0.4989 -7.5419 -1.7375 26 7 -0.9013 -8.0806 -2.8690 27 14 1.2390 -7.8466 -1.1242 28 1 1.9988 -8.6084 -2.1476 29 1 1.9112 -6.5461 -0.8750 30 1 1.1888 -8.6275 0.1379 31 6 -0.0012 -7.0443 1.1089 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3633 0.8901 -0.5136 34 1 -0.3633 -0.8899 -0.5142 35 1 1.6731 2.1144 -0.0004 36 1 4.5648 -2.8046 -1.0154 37 1 5.3240 -2.3456 0.5277 38 1 3.7948 -3.2564 0.5245 39 1 1.4185 -2.6735 2.0088 40 1 0.4863 -4.4810 3.3234 41 1 1.8143 -5.3674 2.5341 42 1 -2.2247 -6.8033 2.8187 43 1 -1.7053 -5.1551 3.3147 44 1 -1.3654 -3.4424 1.8093 45 1 -1.2319 -3.6727 0.0487 46 1 -1.8243 -7.9838 -3.1510 47 1 -0.1473 -8.1222 1.1798 48 1 0.9675 -6.8283 0.6585 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047110756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:34 Heat of formation + Delta-G solvation = -39.020146 kcal Electronic energy + Delta-G solvation = -32162.494826 eV Core-core repulsion = 27991.548822 eV Total energy + Delta-G solvation = -4170.946004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.37245 -40.50824 -39.18735 -38.03753 -36.17579 -34.84230 -33.21548 -32.88970 -31.01812 -30.43163 -29.20090 -29.02945 -27.89697 -25.43105 -24.69458 -23.06731 -22.45128 -22.30874 -20.81189 -20.17612 -19.14923 -18.56752 -18.18784 -17.54414 -17.23801 -16.86774 -16.38812 -15.80787 -15.22375 -14.74412 -14.54364 -14.37225 -14.11825 -14.01132 -13.94174 -13.76149 -13.58672 -13.25159 -13.08698 -12.98437 -12.83550 -12.69317 -12.62713 -12.24397 -12.10150 -12.05848 -11.87578 -11.48219 -11.15487 -10.96865 -10.84890 -10.65014 -10.57763 -10.22959 -10.07498 -9.88790 -9.73217 -9.28173 -8.96112 -8.92689 -8.69152 -8.67851 -7.02785 -6.25890 -3.16882 0.08991 1.05871 1.91258 2.50910 2.83983 3.12228 3.38941 3.49875 3.70360 3.79022 3.98018 4.33656 4.54235 4.64866 4.71458 4.78521 4.85473 4.87120 5.01385 5.02752 5.12111 5.14297 5.19983 5.31079 5.38402 5.44462 5.49895 5.54388 5.55421 5.68921 5.72917 5.77520 5.79161 5.80549 5.84068 5.90167 6.20805 6.24652 6.29225 6.38925 6.51634 6.64963 6.67204 6.75312 6.77465 6.78501 7.18532 7.48579 7.68781 8.20513 8.37790 9.08040 9.59284 10.25935 11.24870 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.003578 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.585900 B = 7823.597644 C = 8318.200466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.063 3.937 3 C -0.282 4.282 4 C 0.499 3.501 5 O -0.477 6.477 6 O -0.256 6.256 7 C 0.188 3.812 8 C -0.121 4.121 9 C -0.257 4.257 10 C 0.569 3.431 11 O -0.500 6.500 12 N -0.719 5.719 13 C 0.140 3.860 14 H 0.111 0.889 15 C -0.118 4.118 16 C -0.100 4.100 17 H 0.092 0.908 18 C -0.127 4.127 19 C 0.160 3.840 20 H 0.071 0.929 21 C -0.137 4.137 22 N -0.603 5.603 23 C -0.315 4.315 24 H 0.078 0.922 25 C -0.019 4.019 26 N -0.931 5.931 27 Si 1.064 2.936 28 H -0.303 1.303 29 H -0.296 1.296 30 H -0.287 1.287 31 C 0.110 3.890 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.163 0.837 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.394 0.606 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.261 0.739 47 H 0.045 0.955 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 12.997 14.539 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.061 3.939 3 C -0.301 4.301 4 C 0.352 3.648 5 O -0.367 6.367 6 O -0.165 6.165 7 C 0.138 3.862 8 C -0.177 4.177 9 C -0.262 4.262 10 C 0.353 3.647 11 O -0.374 6.374 12 N -0.370 5.370 13 C 0.037 3.963 14 H 0.129 0.871 15 C -0.156 4.156 16 C -0.119 4.119 17 H 0.110 0.890 18 C -0.166 4.166 19 C 0.051 3.949 20 H 0.089 0.911 21 C -0.178 4.178 22 N -0.328 5.328 23 C -0.442 4.442 24 H 0.096 0.904 25 C -0.218 4.218 26 N -0.572 5.572 27 Si 0.899 3.101 28 H -0.231 1.231 29 H -0.225 1.225 30 H -0.215 1.215 31 C -0.015 4.015 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.181 0.819 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.228 0.772 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 6.992 12.357 13.227 19.405 hybrid contribution -1.469 1.264 0.695 2.059 sum 5.523 13.621 13.922 20.244 Atomic orbital electron populations 1.21091 0.88952 1.04982 1.03957 1.20302 0.97580 0.90540 0.85467 1.22224 0.92577 1.00249 1.15069 1.19276 0.88433 0.80715 0.76391 1.91005 1.70916 1.25754 1.49017 1.83394 1.44664 1.14606 1.73816 1.22824 0.90401 0.85488 0.87458 1.21177 1.01282 0.89153 1.06107 1.19984 0.92680 0.95825 1.17697 1.17511 0.79305 0.83182 0.84743 1.90982 1.52414 1.63106 1.30854 1.46238 1.59042 1.24143 1.07589 1.21319 0.92423 0.82698 0.99830 0.87073 1.22023 1.00055 0.96917 0.96585 1.22536 0.95659 0.95671 0.98038 0.89010 1.23066 0.95666 1.00349 0.97487 1.21472 0.95673 0.88213 0.89515 0.91096 1.22505 0.94626 0.99558 1.01156 1.44985 1.35206 1.42717 1.09941 1.20120 1.07179 1.30969 0.85935 0.90441 1.25724 1.04240 0.96417 0.95419 1.70877 1.18891 1.44157 1.23283 0.83965 0.76981 0.75366 0.73807 1.23125 1.22473 1.21481 1.22166 0.92386 0.97078 0.89851 0.89062 0.89698 0.89658 0.81938 0.87296 0.88431 0.87962 0.77243 0.91722 0.91755 0.91349 0.91497 0.93248 0.91761 0.92888 0.93680 0.95252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 9.67 36.00 0.35 -0.84 16 2 C 0.06 0.66 5.93 -104.06 -0.62 0.04 16 3 C -0.28 -2.97 9.64 -39.41 -0.38 -3.35 16 4 C 0.50 6.46 7.93 31.72 0.25 6.71 16 5 O -0.48 -7.56 17.93 -19.60 -0.35 -7.91 16 6 O -0.26 -3.07 9.81 -17.60 -0.17 -3.24 16 7 C 0.19 2.02 7.03 -34.54 -0.24 1.78 16 8 C -0.12 -1.04 9.80 36.00 0.35 -0.69 16 9 C -0.26 -3.02 5.63 -104.96 -0.59 -3.62 16 10 C 0.57 8.18 4.18 -12.47 -0.05 8.13 16 11 O -0.50 -10.05 16.77 5.29 0.09 -9.97 16 12 N -0.72 -8.78 5.04 -54.84 -0.28 -9.05 16 13 C 0.14 2.16 2.07 -67.92 -0.14 2.02 16 14 H 0.11 2.32 4.83 -51.93 -0.25 2.07 16 15 C -0.12 -1.46 4.95 -26.21 -0.13 -1.59 16 16 C -0.10 -1.44 4.33 -87.93 -0.38 -1.82 16 17 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 18 C -0.13 -1.80 6.20 -24.14 -0.15 -1.95 16 19 C 0.16 2.88 4.26 -65.78 -0.28 2.60 16 20 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 21 C -0.14 -2.22 5.26 -26.60 -0.14 -2.36 16 22 N -0.60 -13.80 2.37 -161.56 -0.38 -14.18 16 23 C -0.31 -8.83 10.57 -15.06 -0.16 -8.99 16 24 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 25 C -0.02 -0.55 5.50 -17.43 -0.10 -0.65 16 26 N -0.93 -29.52 13.70 55.49 0.76 -28.76 16 27 Si 1.06 26.79 24.44 -169.99 -4.15 22.63 16 28 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 29 H -0.30 -7.19 6.37 56.52 0.36 -6.83 16 30 H -0.29 -6.50 5.42 56.52 0.31 -6.19 16 31 C 0.11 2.22 3.33 -2.82 -0.01 2.21 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.08 0.98 7.18 -51.92 -0.37 0.60 16 35 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.91 6.99 -51.93 -0.36 0.55 16 39 H 0.39 3.38 8.58 -40.82 -0.35 3.03 16 40 H 0.06 0.62 7.97 -51.93 -0.41 0.21 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 44 H 0.05 0.64 8.00 -51.93 -0.42 0.23 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 47 H 0.05 0.98 6.72 -51.93 -0.35 0.63 16 48 H 0.03 0.64 2.61 -51.93 -0.14 0.51 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -36.21 373.94 -8.26 -44.47 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.99 Total: 2.73 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.42 Total: -2.35 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.10 Total: -51.99 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.44 Total: -21.12 kcal Atomic # 14 Polarization: 26.79 SS G_CDS: -4.15 Total: 22.63 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.21 -8.26 -44.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047110756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.451 kcal (2) G-P(sol) polarization free energy of solvation -36.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds