Wall clock time and date at job start Sat Apr 11 2020 07:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35964 * 120.56713 * 2 1 4 4 C 1.40845 * 119.33795 * 180.02562 * 3 2 1 5 5 O 1.21853 * 119.75145 * 180.02562 * 4 3 2 6 6 O 1.34371 * 120.48720 * 359.97438 * 4 3 2 7 7 C 1.33723 * 121.21277 * 359.73721 * 6 4 3 8 8 C 1.50697 * 119.69658 * 180.25858 * 7 6 4 9 9 C 1.37601 * 120.61496 * 0.52472 * 7 6 4 10 10 C 1.47519 * 120.25946 * 179.75325 * 9 7 6 11 11 O 1.21590 * 120.00463 * 269.72635 * 10 9 7 12 12 N 1.34782 * 119.99390 * 89.72206 * 10 9 7 13 13 C 1.46501 * 119.99604 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.32581 * 35.35958 * 13 12 10 15 15 C 1.53033 * 109.32379 * 155.00356 * 13 12 10 16 16 C 1.53967 * 108.82772 * 175.67732 * 15 13 12 17 17 H 1.09000 * 112.99633 * 168.09181 * 16 15 13 18 18 C 1.55432 * 106.41409 * 293.82323 * 16 15 13 19 19 C 1.55448 * 100.23539 * 73.19477 * 18 16 15 20 20 H 1.08996 * 113.04637 * 163.20839 * 19 18 16 21 21 C 1.52994 * 109.32416 * 275.89052 * 13 12 10 22 22 N 1.47792 * 104.11637 * 40.86802 * 19 18 16 23 23 C 1.36929 * 125.85643 * 153.44251 * 22 19 18 24 24 H 1.07998 * 120.00144 * 349.87353 * 23 22 19 25 25 C 1.38811 * 119.99926 * 169.86779 * 23 22 19 26 26 N 1.31624 * 119.99935 * 164.82610 * 25 23 22 27 27 Si 1.86798 * 120.00340 * 344.82619 * 25 23 22 28 28 H 1.48492 * 109.47478 * 185.51381 * 27 25 23 29 29 H 1.48501 * 109.47351 * 305.52110 * 27 25 23 30 30 H 1.48504 * 109.46939 * 65.51613 * 27 25 23 31 31 C 1.47085 * 108.28563 * 333.17670 * 22 19 18 32 32 H 1.09004 * 109.47548 * 269.97697 * 1 2 3 33 33 H 1.08999 * 109.47020 * 29.98640 * 1 2 3 34 34 H 1.09007 * 109.46896 * 149.98160 * 1 2 3 35 35 H 1.08001 * 120.33114 * 359.97438 * 3 2 1 36 36 H 1.09001 * 109.47133 * 270.26585 * 8 7 6 37 37 H 1.08998 * 109.46824 * 30.26389 * 8 7 6 38 38 H 1.08995 * 109.47219 * 150.26172 * 8 7 6 39 39 H 0.96995 * 119.99977 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.57742 * 55.87122 * 15 13 12 41 41 H 1.08995 * 109.68171 * 295.54885 * 15 13 12 42 42 H 1.09005 * 111.23288 * 191.15568 * 18 16 15 43 43 H 1.08999 * 111.23631 * 315.59766 * 18 16 15 44 44 H 1.08997 * 109.53390 * 304.53373 * 21 13 12 45 45 H 1.09002 * 109.52888 * 64.68368 * 21 13 12 46 46 H 0.96997 * 120.00286 * 354.93666 * 26 25 23 47 47 H 1.09003 * 109.97530 * 120.72038 * 31 22 19 48 48 H 1.08998 * 109.97637 * 242.00189 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6065 1.1405 -0.0005 5 8 4.2337 2.1852 -0.0001 6 8 4.2632 -0.0318 -0.0006 7 6 3.6042 -1.1953 0.0052 8 6 4.3752 -2.4901 0.0109 9 6 2.2284 -1.2214 0.0005 10 6 1.5094 -2.5095 0.0014 11 8 1.2123 -3.0408 -1.0512 12 7 1.1818 -3.0975 1.1691 13 6 0.4682 -4.3769 1.1701 14 1 0.8119 -4.9823 0.3314 15 6 0.7552 -5.1159 2.4791 16 6 -0.0842 -6.4061 2.5158 17 1 0.2150 -7.0862 3.3133 18 6 -1.5713 -5.9606 2.5927 19 6 -1.7826 -5.4513 1.1393 20 1 -2.8342 -5.3540 0.8699 21 6 -1.0327 -4.1196 1.0227 22 7 -1.0752 -6.4436 0.3032 23 6 -1.3660 -6.7475 -0.9999 24 1 -2.2698 -6.3690 -1.4540 25 6 -0.4989 -7.5419 -1.7375 26 7 -0.9013 -8.0806 -2.8690 27 14 1.2390 -7.8466 -1.1242 28 1 1.9988 -8.6084 -2.1476 29 1 1.9112 -6.5461 -0.8750 30 1 1.1888 -8.6275 0.1379 31 6 -0.0012 -7.0443 1.1089 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3633 0.8901 -0.5136 34 1 -0.3633 -0.8899 -0.5142 35 1 1.6731 2.1144 -0.0004 36 1 4.5648 -2.8046 -1.0154 37 1 5.3240 -2.3456 0.5277 38 1 3.7948 -3.2564 0.5245 39 1 1.4185 -2.6735 2.0088 40 1 0.4863 -4.4810 3.3234 41 1 1.8143 -5.3674 2.5341 42 1 -2.2247 -6.8033 2.8187 43 1 -1.7053 -5.1551 3.3147 44 1 -1.3654 -3.4424 1.8093 45 1 -1.2319 -3.6727 0.0487 46 1 -1.8243 -7.9838 -3.1510 47 1 -0.1473 -8.1222 1.1798 48 1 0.9675 -6.8283 0.6585 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047110756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:33 Heat of formation + Delta-G solvation = -64.929606 kcal Electronic energy + Delta-G solvation = -32163.618345 eV Core-core repulsion = 27991.548822 eV Total energy + Delta-G solvation = -4172.069523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.32648 -41.77095 -40.43522 -39.09660 -37.09999 -36.24826 -34.88712 -33.96781 -32.57946 -31.93400 -30.34378 -29.92054 -28.80665 -27.03573 -25.65562 -24.88845 -23.56245 -23.15113 -21.98894 -21.64625 -20.46638 -19.56891 -19.53109 -19.27290 -18.23112 -17.87743 -17.70321 -17.19628 -16.53900 -15.92434 -15.79396 -15.46677 -15.31779 -15.21759 -14.98202 -14.87555 -14.65690 -14.52765 -14.32985 -14.30628 -14.01382 -13.59211 -13.53036 -13.47318 -13.37530 -13.23538 -13.06397 -12.85585 -12.64260 -12.51328 -12.21423 -11.75069 -11.62544 -11.57911 -11.42644 -11.33578 -11.16225 -11.02661 -10.88273 -10.64037 -10.11346 -9.58943 -9.01587 -8.61183 -5.39848 -0.76642 0.10677 0.97570 1.32639 1.38440 1.48124 1.67131 1.89947 2.07434 2.55980 2.93910 3.12327 3.17774 3.32182 3.46779 3.62418 3.69413 3.79300 3.92112 3.98088 4.12728 4.24273 4.28143 4.31431 4.34878 4.40649 4.50755 4.52343 4.56041 4.58498 4.65603 4.72443 4.78639 4.80569 4.86846 4.98484 5.03620 5.06956 5.12038 5.16261 5.26637 5.35871 5.38892 5.46678 5.57427 5.62151 5.84340 6.15512 6.21950 6.46686 6.88221 7.16925 7.52175 8.16139 8.92377 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.003578 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.585900 B = 7823.597644 C = 8318.200466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 C -0.277 4.277 4 C 0.494 3.506 5 O -0.514 6.514 6 O -0.258 6.258 7 C 0.200 3.800 8 C -0.124 4.124 9 C -0.268 4.268 10 C 0.579 3.421 11 O -0.567 6.567 12 N -0.696 5.696 13 C 0.142 3.858 14 H 0.053 0.947 15 C -0.110 4.110 16 C -0.086 4.086 17 H 0.132 0.868 18 C -0.110 4.110 19 C 0.140 3.860 20 H 0.052 0.948 21 C -0.126 4.126 22 N -0.623 5.623 23 C -0.293 4.293 24 H 0.037 0.963 25 C -0.085 4.085 26 N -0.975 5.975 27 Si 1.106 2.894 28 H -0.321 1.321 29 H -0.289 1.289 30 H -0.243 1.243 31 C 0.096 3.904 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.184 0.816 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.102 0.898 39 H 0.418 0.582 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.017 0.983 46 H 0.244 0.756 47 H 0.027 0.973 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.591 14.454 19.884 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.067 3.933 3 C -0.296 4.296 4 C 0.350 3.650 5 O -0.407 6.407 6 O -0.166 6.166 7 C 0.150 3.850 8 C -0.179 4.179 9 C -0.273 4.273 10 C 0.364 3.636 11 O -0.445 6.445 12 N -0.347 5.347 13 C 0.038 3.962 14 H 0.071 0.929 15 C -0.148 4.148 16 C -0.105 4.105 17 H 0.150 0.850 18 C -0.148 4.148 19 C 0.034 3.966 20 H 0.070 0.930 21 C -0.167 4.167 22 N -0.349 5.349 23 C -0.422 4.422 24 H 0.055 0.945 25 C -0.277 4.277 26 N -0.620 5.620 27 Si 0.936 3.064 28 H -0.251 1.251 29 H -0.217 1.217 30 H -0.167 1.167 31 C -0.028 4.028 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.201 0.799 36 H 0.124 0.876 37 H 0.145 0.855 38 H 0.120 0.880 39 H 0.256 0.744 40 H 0.133 0.867 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.133 0.867 44 H 0.113 0.887 45 H 0.036 0.964 46 H 0.053 0.947 47 H 0.045 0.955 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 8.267 13.849 18.701 24.695 hybrid contribution -2.015 0.862 -0.998 2.408 sum 6.251 14.711 17.703 23.851 Atomic orbital electron populations 1.21141 0.87740 1.04406 1.05451 1.20423 0.98356 0.89886 0.84617 1.22272 0.91251 1.01086 1.15024 1.19613 0.89153 0.80425 0.75838 1.90987 1.71672 1.27005 1.51050 1.83384 1.44921 1.14804 1.73503 1.23127 0.90299 0.85664 0.85955 1.21316 1.02491 0.87765 1.06328 1.19833 0.93102 0.95030 1.19340 1.17759 0.78309 0.83364 0.84195 1.90970 1.55189 1.65028 1.33358 1.45953 1.57642 1.23015 1.08132 1.21078 0.91580 0.83416 1.00101 0.92866 1.22054 1.01002 0.96013 0.95725 1.22640 0.96214 0.96835 0.94768 0.85017 1.23027 0.95513 1.01661 0.94610 1.21818 0.94489 0.88509 0.91817 0.93010 1.22335 0.95398 0.98712 1.00221 1.45026 1.36706 1.44547 1.08619 1.19960 1.04943 1.28565 0.88717 0.94458 1.27002 1.07893 0.97296 0.95492 1.70983 1.17967 1.47543 1.25538 0.83496 0.72357 0.75905 0.74689 1.25129 1.21696 1.16725 1.22343 0.90701 0.96487 0.93263 0.86398 0.87795 0.92648 0.79863 0.87604 0.85461 0.87974 0.74353 0.86711 0.89849 0.91528 0.86746 0.88660 0.96435 0.94681 0.95496 0.96155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.67 71.23 0.69 -1.37 16 2 C 0.07 1.30 5.93 -19.50 -0.12 1.18 16 3 C -0.28 -5.25 9.64 22.38 0.22 -5.03 16 4 C 0.49 12.13 7.93 68.46 0.54 12.67 16 5 O -0.51 -15.94 17.93 18.73 0.34 -15.60 16 6 O -0.26 -5.76 9.81 25.89 0.25 -5.51 16 7 C 0.20 3.93 7.03 25.53 0.18 4.11 16 8 C -0.12 -1.86 9.80 71.24 0.70 -1.16 16 9 C -0.27 -5.89 5.63 -20.08 -0.11 -6.00 16 10 C 0.58 16.13 4.18 86.69 0.36 16.49 16 11 O -0.57 -23.73 16.77 -4.00 -0.07 -23.80 16 12 N -0.70 -14.86 5.04 -445.67 -2.24 -17.10 16 13 C 0.14 4.01 2.07 45.00 0.09 4.10 16 14 H 0.05 2.20 4.83 -2.39 -0.01 2.19 16 15 C -0.11 -2.03 4.95 30.93 0.15 -1.88 16 16 C -0.09 -2.00 4.33 -9.05 -0.04 -2.04 16 17 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 18 C -0.11 -2.56 6.20 32.27 0.20 -2.36 16 19 C 0.14 4.91 4.26 45.68 0.19 5.11 16 20 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 21 C -0.13 -3.84 5.26 30.68 0.16 -3.68 16 22 N -0.62 -28.92 2.37 -665.06 -1.58 -30.50 16 23 C -0.29 -17.45 10.57 84.03 0.89 -16.56 16 24 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 25 C -0.09 -5.32 5.50 84.86 0.47 -4.85 16 26 N -0.97 -66.06 13.70 21.65 0.30 -65.76 16 27 Si 1.11 56.12 24.44 68.60 1.68 57.80 16 28 H -0.32 -17.08 7.11 99.48 0.71 -16.37 16 29 H -0.29 -14.10 6.37 99.48 0.63 -13.47 16 30 H -0.24 -10.44 5.42 99.48 0.54 -9.90 16 31 C 0.10 3.70 3.33 86.85 0.29 3.99 16 32 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.10 1.24 8.09 -2.39 -0.02 1.22 16 34 H 0.05 1.25 7.18 -2.38 -0.02 1.23 16 35 H 0.18 2.65 8.06 -2.91 -0.02 2.62 16 36 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 1.58 6.99 -2.39 -0.02 1.56 16 39 H 0.42 5.01 8.58 -92.71 -0.80 4.21 16 40 H 0.11 1.12 7.97 -2.39 -0.02 1.10 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.11 1.69 7.75 -2.39 -0.02 1.67 16 44 H 0.10 2.02 8.00 -2.39 -0.02 2.00 16 45 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.24 16.64 8.73 -92.71 -0.81 15.83 16 47 H 0.03 1.12 6.72 -2.39 -0.02 1.11 16 48 H 0.02 0.86 2.61 -2.39 -0.01 0.86 16 Total: -1.00 -91.24 373.94 3.47 -87.77 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -0.07 Total: 10.00 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 4.87 Total: 2.71 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -3.52 Total: -113.37 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: 0.52 Total: -44.91 kcal Atomic # 14 Polarization: 56.12 SS G_CDS: 1.68 Total: 57.80 kcal Total: -91.24 3.47 -87.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047110756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.836 kcal (2) G-P(sol) polarization free energy of solvation -91.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds