Wall clock time and date at job start Sat Apr 11 2020 07:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35960 * 120.56556 * 2 1 4 4 C 1.40846 * 119.33487 * 180.27412 * 3 2 1 5 5 O 1.21853 * 119.75596 * 179.73452 * 4 3 2 6 6 O 1.34384 * 120.48443 * 359.76189 * 4 3 2 7 7 C 1.33718 * 121.21057 * 359.97438 * 6 4 3 8 8 C 1.50703 * 119.69151 * 179.97438 * 7 6 4 9 9 C 1.37593 * 120.62025 * 0.02562 * 7 6 4 10 10 C 1.47520 * 120.26179 * 180.02562 * 9 7 6 11 11 O 1.21596 * 119.99986 * 89.99555 * 10 9 7 12 12 N 1.34773 * 119.99773 * 270.00312 * 10 9 7 13 13 C 1.46182 * 117.66123 * 0.04360 * 12 10 9 14 14 C 1.53056 * 109.31727 * 141.18692 * 13 12 10 15 15 C 1.52943 * 108.66226 * 53.72404 * 14 13 12 16 16 C 1.52928 * 109.78921 * 293.90370 * 15 14 13 17 17 H 1.09003 * 110.51070 * 292.90145 * 16 15 14 18 18 C 1.44193 * 117.76216 * 179.97438 * 12 10 9 19 19 H 1.09001 * 108.69612 * 333.01122 * 18 12 10 20 20 C 1.54065 * 111.76584 * 93.55263 * 18 12 10 21 21 C 1.54061 * 103.74405 * 153.26435 * 20 18 12 22 22 N 1.46890 * 107.70066 * 342.86680 * 21 20 18 23 23 C 1.36941 * 125.57653 * 177.04976 * 22 21 20 24 24 H 1.08001 * 119.99779 * 179.97438 * 23 22 21 25 25 C 1.38812 * 119.99949 * 359.97438 * 23 22 21 26 26 N 1.31614 * 120.00278 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99631 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47169 * 90.00065 * 27 25 23 29 29 H 1.48500 * 109.47004 * 209.99765 * 27 25 23 30 30 H 1.48494 * 109.47400 * 329.99761 * 27 25 23 31 31 H 1.09004 * 109.46731 * 270.23267 * 1 2 3 32 32 H 1.08997 * 109.47402 * 30.23188 * 1 2 3 33 33 H 1.08993 * 109.46903 * 150.23776 * 1 2 3 34 34 H 1.07999 * 120.33445 * 0.03503 * 3 2 1 35 35 H 1.08992 * 109.46837 * 270.01905 * 8 7 6 36 36 H 1.09002 * 109.46865 * 30.02560 * 8 7 6 37 37 H 1.09003 * 109.47060 * 150.01844 * 8 7 6 38 38 H 1.08999 * 109.72505 * 21.14093 * 13 12 10 39 39 H 1.09001 * 109.42583 * 261.04569 * 13 12 10 40 40 H 1.09002 * 109.63380 * 293.91933 * 14 13 12 41 41 H 1.08999 * 109.62931 * 173.52145 * 14 13 12 42 42 H 1.08998 * 109.41840 * 53.99951 * 15 14 13 43 43 H 1.08995 * 109.41852 * 173.80393 * 15 14 13 44 44 H 1.09002 * 110.57434 * 34.69973 * 20 18 12 45 45 H 1.09006 * 110.57262 * 271.82663 * 20 18 12 46 46 H 1.08999 * 109.81036 * 223.32013 * 21 20 18 47 47 H 1.08993 * 109.86539 * 102.44281 * 21 20 18 48 48 H 0.97000 * 119.99978 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1707 0.0000 4 6 3.6066 1.1404 -0.0059 5 8 4.2339 2.1851 -0.0108 6 8 4.2633 -0.0320 -0.0066 7 6 3.6041 -1.1954 -0.0013 8 6 4.3752 -2.4903 -0.0029 9 6 2.2285 -1.2215 0.0045 10 6 1.5093 -2.5095 0.0109 11 8 1.2174 -3.0376 1.0666 12 7 1.1760 -3.1009 -1.1534 13 6 1.5529 -2.4218 -2.3918 14 6 2.0073 -3.4601 -3.4205 15 6 0.9096 -4.5148 -3.5689 16 6 0.7661 -5.2999 -2.2644 17 1 1.6576 -5.8992 -2.0793 18 6 0.4743 -4.3590 -1.0909 19 1 0.7350 -4.8585 -0.1578 20 6 -1.0529 -4.1650 -1.1510 21 6 -1.5663 -5.4867 -1.7536 22 7 -0.4243 -6.1648 -2.3811 23 6 -0.4588 -7.3973 -2.9771 24 1 0.4384 -7.8118 -3.4126 25 6 -1.6469 -8.1137 -3.0214 26 7 -2.7402 -7.6088 -2.4903 27 14 -1.6941 -9.7946 -3.8350 28 1 -1.3896 -10.8414 -2.8266 29 1 -3.0457 -10.0322 -4.4024 30 1 -0.6845 -9.8466 -4.9227 31 1 -0.3633 0.0042 1.0277 32 1 -0.3634 0.8879 -0.5174 33 1 -0.3633 -0.8921 -0.5101 34 1 1.6732 2.1143 0.0006 35 1 4.5562 -2.8040 -1.0309 36 1 5.3281 -2.3463 0.5063 37 1 3.7988 -3.2570 0.5148 38 1 2.3674 -1.7244 -2.1957 39 1 0.6939 -1.8761 -2.7819 40 1 2.9275 -3.9347 -3.0799 41 1 2.1797 -2.9734 -4.3804 42 1 -0.0353 -4.0241 -3.8023 43 1 1.1709 -5.1985 -4.3765 44 1 -1.3072 -3.3251 -1.7976 45 1 -1.4598 -4.0166 -0.1508 46 1 -2.3300 -5.2790 -2.5030 47 1 -1.9824 -6.1156 -0.9666 48 1 -3.5703 -8.1097 -2.5209 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049581880.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:42 Heat of formation + Delta-G solvation = -46.457820 kcal Electronic energy + Delta-G solvation = -32173.218287 eV Core-core repulsion = 28001.949761 eV Total energy + Delta-G solvation = -4171.268526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.45635 -40.62936 -38.40339 -37.93685 -36.22587 -35.45826 -33.18432 -32.74351 -32.22029 -29.32646 -29.14378 -28.62149 -28.04210 -25.19288 -24.48794 -24.16457 -22.33842 -22.12597 -21.33167 -20.16996 -18.77155 -18.49045 -17.91422 -17.27668 -16.99393 -16.88605 -16.31788 -15.24594 -15.07394 -14.84023 -14.43950 -14.42535 -14.23987 -14.10517 -13.88128 -13.78754 -13.69050 -13.54698 -13.32442 -12.96298 -12.73537 -12.66505 -12.53129 -12.19065 -12.11011 -12.03210 -11.52404 -11.21174 -11.06202 -10.85391 -10.83429 -10.75124 -10.60219 -10.56440 -10.25875 -10.15030 -9.83879 -9.70754 -9.69712 -8.68217 -8.67230 -8.51682 -6.94535 -5.78332 -3.13463 0.06456 1.03613 1.88945 2.37290 2.79058 2.98711 3.35451 3.40618 3.42457 3.75605 3.90122 4.19826 4.38979 4.41668 4.68107 4.78222 4.83756 4.94444 4.97841 5.03294 5.17372 5.21455 5.26400 5.29382 5.35139 5.36171 5.43362 5.50328 5.52957 5.58864 5.76101 5.76800 5.78901 5.87228 5.96456 6.10014 6.18539 6.25962 6.43590 6.47081 6.62814 6.75515 6.83067 6.95148 7.16813 7.29246 7.49354 7.55263 7.76116 8.04067 8.18135 9.13569 9.73424 10.37277 11.32422 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.023778 B = 0.002893 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.277908 B = 9677.408411 C =10037.982645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.061 3.939 3 C -0.280 4.280 4 C 0.499 3.501 5 O -0.476 6.476 6 O -0.256 6.256 7 C 0.184 3.816 8 C -0.122 4.122 9 C -0.251 4.251 10 C 0.568 3.432 11 O -0.523 6.523 12 N -0.576 5.576 13 C 0.108 3.892 14 C -0.131 4.131 15 C -0.131 4.131 16 C 0.163 3.837 17 H 0.056 0.944 18 C 0.135 3.865 19 H 0.094 0.906 20 C -0.150 4.150 21 C 0.179 3.821 22 N -0.595 5.595 23 C -0.229 4.229 24 H 0.078 0.922 25 C -0.005 4.005 26 N -0.919 5.919 27 Si 0.912 3.088 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.164 0.836 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.041 0.959 47 H 0.053 0.947 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.879 14.372 2.119 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.059 3.941 3 C -0.299 4.299 4 C 0.351 3.649 5 O -0.366 6.366 6 O -0.165 6.165 7 C 0.134 3.866 8 C -0.178 4.178 9 C -0.255 4.255 10 C 0.354 3.646 11 O -0.399 6.399 12 N -0.307 5.307 13 C -0.014 4.014 14 C -0.170 4.170 15 C -0.172 4.172 16 C 0.054 3.946 17 H 0.074 0.926 18 C 0.031 3.969 19 H 0.112 0.888 20 C -0.190 4.190 21 C 0.054 3.946 22 N -0.319 5.319 23 C -0.357 4.357 24 H 0.096 0.904 25 C -0.202 4.202 26 N -0.566 5.566 27 Si 0.742 3.258 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.181 0.819 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.013 14.378 2.597 17.713 hybrid contribution -0.377 -0.669 -0.531 0.933 sum 9.636 13.710 2.066 16.884 Atomic orbital electron populations 1.21085 0.88917 1.04500 1.04364 1.20305 0.97606 0.90518 0.85623 1.22227 0.92566 1.00250 1.14856 1.19279 0.88425 0.80722 0.76430 1.91009 1.70890 1.25753 1.48942 1.83402 1.44626 1.14589 1.73837 1.22788 0.90331 0.85551 0.87926 1.21186 1.01572 0.89400 1.05597 1.19873 0.92731 0.95778 1.17132 1.17677 0.79174 0.83337 0.84436 1.90843 1.54271 1.64128 1.30691 1.47253 1.55845 1.22120 1.05453 1.21598 0.99984 0.95047 0.84814 1.21846 0.99868 0.97183 0.98095 1.22144 0.97452 0.97063 1.00511 1.20873 0.92144 0.90460 0.91133 0.92638 1.21210 0.92240 0.82447 1.00970 0.88758 1.22998 0.94469 1.00694 1.00793 1.21067 0.89507 0.87726 0.96307 1.44491 1.03511 1.16916 1.67001 1.18996 0.95406 0.91549 1.29799 0.90382 1.24802 0.95677 0.98795 1.00880 1.69959 0.99725 1.37627 1.49307 0.86125 0.76888 0.83875 0.78875 1.21553 1.21687 1.20692 0.88824 0.89662 0.90025 0.81893 0.87612 0.88408 0.87638 0.90874 0.91543 0.91619 0.90980 0.91895 0.91678 0.92530 0.91809 0.94117 0.92860 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 9.67 36.01 0.35 -0.77 16 2 C 0.06 0.60 5.93 -104.05 -0.62 -0.02 16 3 C -0.28 -2.76 9.65 -39.41 -0.38 -3.14 16 4 C 0.50 6.10 7.93 31.72 0.25 6.35 16 5 O -0.48 -7.25 17.93 -19.60 -0.35 -7.60 16 6 O -0.26 -2.86 9.81 -17.62 -0.17 -3.03 16 7 C 0.18 1.80 6.49 -34.54 -0.22 1.58 16 8 C -0.12 -0.90 9.80 36.01 0.35 -0.55 16 9 C -0.25 -2.73 3.64 -104.96 -0.38 -3.11 16 10 C 0.57 7.51 4.00 -12.48 -0.05 7.46 16 11 O -0.52 -8.81 16.34 5.28 0.09 -8.72 16 12 N -0.58 -7.47 2.81 -168.45 -0.47 -7.95 16 13 C 0.11 1.14 6.13 -4.19 -0.03 1.11 16 14 C -0.13 -1.44 6.08 -26.73 -0.16 -1.61 16 15 C -0.13 -2.04 5.31 -26.80 -0.14 -2.18 16 16 C 0.16 2.96 3.29 -67.25 -0.22 2.74 16 17 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 18 C 0.14 2.24 2.75 -68.49 -0.19 2.05 16 19 H 0.09 1.75 7.05 -51.93 -0.37 1.38 16 20 C -0.15 -2.68 6.45 -25.62 -0.17 -2.85 16 21 C 0.18 4.09 5.39 -3.28 -0.02 4.08 16 22 N -0.59 -13.91 2.93 -163.78 -0.48 -14.39 16 23 C -0.23 -5.97 10.27 -15.06 -0.15 -6.13 16 24 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 25 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 26 N -0.92 -25.93 10.29 55.49 0.57 -25.36 16 27 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.08 0.80 7.18 -51.93 -0.37 0.43 16 34 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.11 0.92 6.99 -51.93 -0.36 0.56 16 38 H 0.07 0.64 5.93 -51.93 -0.31 0.34 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.07 8.02 -51.93 -0.42 0.65 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.04 1.03 7.60 -51.93 -0.39 0.64 16 47 H 0.05 1.38 7.24 -51.93 -0.38 1.01 16 48 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -31.81 382.96 -9.16 -40.97 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.21 Total: -0.73 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -1.87 Total: 4.79 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.38 Total: -47.70 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.44 Total: -19.36 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.81 -9.16 -40.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049581880.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.487 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds